genome.fa.s168.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  92  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15894853--15896896	181	11.4	179	76	9	1492	41	10	8	39	1.69
15897318--15900948	180	19.9	180	72	12	1709	41	9	8	40	1.67
15897624--15899391	543	3.3	531	80	6	1502	42	10	8	39	1.69
15897531--15899387	723	2.6	715	79	6	1704	42	10	8	39	1.69
15899610--15899642	18	1.9	17	88	11	50	42	6	3	48	1.43
15899438--15900250	430	1.9	425	83	5	1066	40	8	8	42	1.66
15899861--15900900	362	2.9	356	79	10	1108	42	8	7	41	1.64
15902047--15902119	20	3.6	20	73	14	69	24	21	23	30	1.99
15910552--15910641	20	4.4	20	75	10	76	24	22	23	30	1.99
15911935--15912796	180	4.9	169	73	14	441	41	10	8	40	1.68
15911823--15913452	360	4.8	337	75	11	1070	42	9	8	40	1.66
15912101--15912790	180	3.8	181	79	4	741	42	9	7	40	1.66
15912662--15912949	158	1.8	159	84	3	402	42	7	7	42	1.61
15912921--15912956	16	2.2	17	90	5	56	61	0	0	38	0.96
15913135--15913612	180	2.7	178	81	8	515	42	8	7	41	1.64
15914254--15914289	18	1.9	19	88	5	56	41	11	8	38	1.71
15913826--15914419	183	3.3	176	77	10	578	43	8	7	40	1.62
15914616--15926955	181	68.4	180	73	9	7196	41	10	8	39	1.69
15914185--15915074	471	1.9	458	79	8	992	42	9	8	39	1.68
15916000--15916035	16	2.1	17	90	10	56	41	5	8	44	1.58
15916405--15916460	19	3.1	19	74	5	53	50	1	5	42	1.35
15916708--15916764	18	3.2	18	78	14	73	36	5	7	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15914649--15932275	718	24.6	695	70	13	2305	41	9	8	39	1.69
15920084--15920904	182	4.6	180	76	9	724	41	11	8	38	1.71
15920674--15921142	238	2.0	243	80	4	549	40	11	8	39	1.72
15920917--15926947	180	33.6	180	75	7	4004	41	10	8	39	1.69
15914649--15938830	901	27.0	886	71	12	7327	41	9	8	40	1.69
15925920--15925969	17	2.8	18	73	14	59	38	6	12	44	1.66
15926482--15927443	493	1.9	495	82	5	1212	41	10	9	38	1.72
15926954--15932582	181	31.5	179	73	10	3206	41	10	8	39	1.69
15928699--15932582	361	10.9	359	75	8	2628	41	9	8	39	1.68
15932588--15935670	181	17.1	180	77	7	2361	41	9	8	40	1.67
15932585--15938830	721	8.7	713	73	11	3538	41	9	8	40	1.68
15935726--15936703	181	5.4	178	75	8	725	41	11	7	39	1.70
15936892--15936927	16	2.1	17	90	10	56	41	5	8	44	1.58
15936743--15938830	180	11.6	179	77	6	1562	41	9	8	40	1.67
15938794--15938864	34	2.1	34	100	0	142	53	5	0	40	1.24
15938882--15940641	181	9.8	181	75	6	1181	39	7	10	42	1.68
15939502--15940641	540	2.1	537	80	7	1242	38	8	10	42	1.68
15941004--15941177	92	1.9	92	87	2	260	32	4	10	53	1.53
15941096--15942160	179	5.9	180	78	7	912	39	8	10	41	1.70
15941096--15942040	355	2.6	353	80	6	959	38	8	10	42	1.69
15943341--15943397	26	2.2	25	84	9	69	77	1	12	8	1.07
15944401--15944621	43	5.1	42	87	7	286	23	12	20	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15944442--15944621	89	2.0	89	94	2	317	23	13	20	43	1.86
15944704--15944911	59	3.6	57	82	4	245	40	8	14	36	1.76
15945389--15947402	181	11.2	180	76	6	1603	40	8	9	41	1.69
15945468--15947326	360	5.2	361	76	8	981	40	8	9	40	1.69
15946269--15946321	23	2.3	23	74	9	54	43	3	1	50	1.30
15945481--15946502	180	5.7	180	73	10	472	40	8	10	41	1.70
15945407--15947328	540	3.6	538	75	8	1208	40	8	9	40	1.69
15947397--15948540	181	6.4	177	77	7	898	40	7	10	41	1.68
15947397--15948540	361	3.2	355	77	7	1091	40	7	10	41	1.68
15947605--15948559	362	2.7	360	79	5	1049	40	7	9	41	1.67
15948566--15949207	181	3.6	179	78	3	653	42	9	11	37	1.73
15948079--15949020	482	2.0	482	80	2	1061	41	8	11	38	1.72
15947903--15949193	663	1.9	663	82	3	1603	41	8	10	39	1.70
15949166--15949212	19	2.7	18	77	12	53	42	4	12	40	1.63
15949238--15952217	181	16.3	180	70	13	1320	41	9	8	41	1.68
15950663--15950797	66	2.0	66	85	2	182	37	10	8	44	1.68
15950500--15950947	242	1.9	242	80	3	535	38	8	8	43	1.67
15950743--15951804	358	3.0	355	80	6	1090	41	8	8	41	1.65
15950792--15952211	358	4.0	355	76	8	1040	40	9	8	41	1.67
15951719--15952211	169	2.9	169	78	7	494	38	11	9	40	1.73
15952101--15952332	120	1.9	120	86	1	331	35	12	7	44	1.70
15952214--15954270	181	11.5	179	76	8	1533	42	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15952221--15954250	718	2.8	708	78	7	1828	42	9	7	40	1.67
15952232--15955464	536	6.1	527	70	14	1548	42	9	8	40	1.66
15954450--15954494	24	1.9	23	81	4	54	64	4	2	28	1.25
15953665--15954944	662	1.9	660	78	6	1374	41	9	7	41	1.66
15954328--15955466	361	3.2	358	79	4	1125	42	8	8	40	1.66
15954328--15955466	180	6.3	179	77	6	980	42	8	8	40	1.66
15955861--15955925	21	3.1	21	71	8	69	33	26	20	20	1.96
15955865--15955937	21	3.5	21	72	7	67	36	23	19	20	1.95
15963749--15963805	26	2.2	27	84	9	82	26	10	22	40	1.86
15966262--15966546	157	1.8	157	81	4	360	37	12	7	42	1.72
15966446--15967314	181	4.8	181	75	5	668	41	9	8	40	1.68
15967080--15967116	18	2.0	19	89	5	58	56	0	2	40	1.13
15967080--15967118	20	2.1	18	85	9	51	56	0	2	41	1.13
15967314--15968954	181	9.2	182	75	9	1127	42	10	7	39	1.67
15967398--15968352	358	2.7	356	75	8	860	43	9	7	39	1.66
15968286--15968926	349	1.9	343	81	5	781	42	10	6	39	1.65
15969254--15971283	180	11.4	179	75	8	1321	39	8	9	41	1.69
15971377--15971936	181	3.1	176	72	13	480	39	7	10	42	1.68
15971378--15972070	357	1.9	357	80	5	803	39	7	11	41	1.70
15971727--15972762	515	2.0	506	82	5	1251	40	7	11	41	1.69
15972244--15973090	181	4.7	179	77	7	641	41	8	9	40	1.68
15972261--15972914	358	1.8	358	81	2	812	41	8	9	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15973643--15974996	181	7.5	181	76	7	972	40	10	7	40	1.69
15973643--15974578	362	2.6	361	82	5	1095	42	9	7	40	1.66
15974502--15975003	170	2.9	170	77	9	444	38	11	9	41	1.73
15974898--15975124	120	1.9	120	84	5	305	34	11	8	44	1.71
15974999--15978741	181	20.4	180	71	11	1727	41	10	8	40	1.69
15975381--15976420	361	2.9	355	79	4	875	40	10	8	39	1.70
15975381--15976784	715	2.0	715	79	5	1546	40	10	8	39	1.71
15977474--15977524	21	2.5	19	74	25	50	23	9	7	58	1.56
15978844--15979305	186	2.5	185	80	6	494	42	11	8	37	1.70
15979368--15979560	100	1.9	100	82	0	242	38	11	7	43	1.69
15979462--15983350	181	21.7	181	72	10	2177	42	9	7	40	1.67
15980559--15983350	713	3.9	713	76	7	2515	42	9	7	39	1.67
15982837--15982877	18	2.3	18	84	16	59	43	9	2	43	1.50
15983085--15983666	319	1.8	320	81	6	723	43	9	7	39	1.63
15983350--15984204	181	4.8	178	76	7	698	42	10	8	39	1.70
15983509--15984167	356	1.8	357	82	3	835	41	11	8	38	1.72
15983886--15984826	319	2.9	319	89	2	1320	42	10	6	40	1.65
15984391--15984646	138	1.9	138	85	4	365	43	7	4	44	1.53
15984524--15985579	181	5.9	179	74	8	839	43	10	6	39	1.65
15985617--15985793	97	1.8	97	87	0	264	37	10	7	45	1.66
15985711--15985991	157	1.8	156	83	1	375	42	8	7	41	1.63
15986191--15986237	17	2.7	17	75	15	51	36	8	4	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15985846--15986369	180	2.9	179	79	8	544	42	8	6	41	1.62
15986610--15986676	33	2.0	33	97	0	125	19	11	8	59	1.58
15987214--15988853	180	9.2	180	75	7	1123	41	11	7	39	1.69
15987034--15988665	361	4.6	356	75	10	1159	42	11	7	39	1.69
15987474--15988853	541	2.6	528	79	6	1370	41	11	7	39	1.70
15988887--15994331	181	30.4	181	75	8	3478	40	8	9	41	1.68
15990354--15991022	177	3.8	177	78	8	473	40	9	9	40	1.71
15990205--15994331	360	11.5	356	74	9	2720	40	8	9	41	1.68
15994408--15996694	181	12.7	180	75	7	1573	39	8	10	41	1.69
15996200--15997145	491	1.9	497	82	4	1191	38	8	10	42	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100