genome.fa.s168.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  11  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982786--1982833	25	1.9	26	91	8	82	41	8	2	47	1.45
1983383--1983423	19	2.1	20	86	4	57	21	63	0	14	1.30
1984995--1985027	15	2.2	15	89	10	50	60	0	3	36	1.12
1985470--1985521	21	2.5	21	90	6	79	50	0	0	50	1.00
1985470--1985521	22	2.5	22	93	6	90	50	0	0	50	1.00
1985509--1985556	16	3.0	16	78	0	51	62	2	0	35	1.07
1985511--1985581	24	3.0	23	81	6	79	60	1	0	38	1.06
1985513--1985581	12	5.8	12	75	14	63	60	1	0	37	1.06
1987597--1987629	2	16.5	2	100	0	66	48	0	0	51	1.00
1989497--1989547	13	4.1	13	77	7	61	50	0	3	45	1.20
1990026--1990072	23	2.0	23	84	8	60	44	2	0	53	1.12
1990058--1990082	12	2.1	12	100	0	50	44	0	0	56	0.99
1998496--1998615	60	2.0	60	93	0	204	17	29	14	39	1.89
2002950--2003029	30	2.6	30	77	9	81	42	0	1	56	1.07
2003066--2003127	24	2.8	22	79	15	65	41	0	0	58	0.98
2003108--2003169	24	2.6	25	77	15	76	32	1	0	66	1.02
2003074--2003187	24	4.8	24	74	17	71	39	0	0	59	1.03
2004741--2004798	24	2.6	22	73	21	59	44	0	0	55	0.99
2009567--2009626	24	2.5	23	83	8	66	63	0	1	35	1.05
2009585--2009626	12	3.6	12	87	3	59	71	0	0	28	0.86
2011270--2011317	23	2.2	21	82	14	53	54	2	2	41	1.24
2011288--2011335	21	2.3	21	85	7	62	56	4	2	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2020820--2020862	19	2.1	21	87	8	63	69	6	0	23	1.12
2021729--2021815	11	7.6	11	69	20	54	48	1	2	48	1.21
2021735--2021764	16	1.9	15	93	6	51	46	0	3	50	1.18
2034337--2034406	27	2.6	26	73	6	68	51	0	1	47	1.09
2034335--2034423	27	3.3	27	72	13	67	50	1	1	47	1.15
2048315--2048379	16	3.9	16	69	23	53	32	1	6	60	1.31
2052480--2052541	34	1.9	33	87	9	92	54	11	11	22	1.67
2052808--2052867	26	2.3	25	81	16	68	48	0	1	50	1.11
2052810--2052874	27	2.3	27	79	10	69	43	0	1	55	1.09
2061426--2061494	30	2.3	29	83	14	79	43	2	0	53	1.15
2061460--2061494	13	2.8	13	91	4	54	40	0	0	60	0.97
2062098--2062135	18	2.1	18	85	9	51	34	0	0	65	0.93
2062125--2062165	20	2.0	20	100	0	82	48	0	0	51	1.00
2062136--2062196	30	2.0	31	90	3	97	52	0	1	45	1.10
2062255--2062322	23	3.2	22	78	10	70	55	2	0	41	1.15
2062756--2062794	20	2.0	20	90	10	62	7	5	5	82	0.96
2063163--2063196	15	2.3	15	89	0	50	55	0	0	44	0.99
2072025--2072055	2	16.0	2	93	6	55	48	0	0	51	1.00
2086224--2086261	18	2.1	18	100	0	76	50	5	15	28	1.66
2093891--2093923	14	2.4	14	94	0	57	0	15	0	84	0.61
2094171--2094234	19	3.4	20	77	12	73	51	6	10	31	1.62
2094872--2094896	11	2.3	11	100	0	50	16	0	8	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2095173--2095222	18	2.9	16	82	11	55	68	2	4	26	1.18
2096139--2096178	17	2.2	19	86	8	57	87	5	2	5	0.73
2107194--2107675	138	3.5	137	86	4	594	27	12	19	39	1.88
2107195--2107648	46	9.8	46	79	9	458	27	12	20	39	1.88
2107883--2107917	11	3.1	11	91	4	52	0	14	0	85	0.59
2108168--2108215	20	2.3	21	86	10	64	56	6	12	25	1.59
2108168--2108215	21	2.3	21	85	7	62	56	6	12	25	1.59
2109171--2109220	18	2.9	16	82	11	55	68	2	4	26	1.18
2117563--2117625	20	3.1	19	73	11	54	36	3	9	50	1.51
2120203--2120468	78	3.4	78	80	0	307	30	22	24	22	1.99
2120521--2120779	78	3.3	77	71	13	224	29	19	20	30	1.97
2120510--2120815	156	2.0	156	83	5	395	30	18	21	29	1.97
2120521--2120818	78	3.8	76	72	12	201	30	19	21	28	1.97
2123618--2123678	13	4.8	13	74	9	56	39	0	0	60	0.97
2123657--2123685	14	2.1	14	100	0	58	44	0	0	55	0.99
2129389--2129445	28	2.0	28	100	0	114	47	21	10	21	1.80
2130825--2130871	12	3.7	12	86	13	67	34	0	0	65	0.93
2136230--2136277	2	24.0	2	82	0	60	52	6	0	41	1.27
2136238--2136298	26	2.3	26	85	0	77	47	6	3	42	1.45
2136230--2136276	10	4.7	10	91	0	76	53	6	0	40	1.27
2136354--2136380	8	3.4	8	100	0	54	51	22	0	25	1.48
2136325--2136396	12	5.9	12	78	3	54	45	9	5	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2146926--2146956	2	15.5	2	100	0	62	0	51	0	48	1.00
2153709--2153747	20	1.9	20	85	15	53	35	0	0	64	0.94
2153763--2153815	21	2.5	21	90	6	81	49	0	0	50	1.00
2159070--2159100	8	3.8	8	91	8	53	74	0	0	25	0.82
2159161--2159207	24	2.0	24	86	0	67	31	2	0	65	1.04
2164564--2164608	2	24.0	2	82	13	60	46	0	2	51	1.13
2169460--2169588	65	2.0	65	87	0	186	43	6	6	43	1.56
2177302--2177341	18	2.1	20	86	9	57	57	2	0	40	1.12
2178282--2178513	117	2.0	117	93	0	392	44	8	9	37	1.68
2183339--2183395	30	1.9	30	85	7	80	43	7	1	47	1.40
2187183--2187248	21	3.3	20	77	12	73	69	3	0	27	1.03
2187231--2187306	24	3.1	24	77	12	84	73	10	0	15	1.09
2187235--2187303	17	4.3	16	82	12	72	72	11	0	15	1.12
2187243--2187310	17	4.2	16	77	11	68	73	13	0	13	1.10
2187844--2187879	16	2.2	17	90	5	56	25	27	33	13	1.94
2188407--2188440	10	3.4	10	87	0	50	79	0	2	17	0.86
2196002--2196038	19	1.9	19	89	10	58	62	16	16	5	1.51
2197004--2197051	24	2.1	24	85	11	66	68	0	4	27	1.07
2197168--2197221	27	2.0	27	85	0	72	35	7	9	48	1.63
2202053--2202530	246	2.0	242	89	3	744	31	20	16	31	1.95
2204087--2204114	14	2.0	14	100	0	56	42	0	35	21	1.53
2205902--2205948	22	2.1	23	88	4	69	59	8	14	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2216123--2216165	16	3.0	13	78	21	50	58	0	6	34	1.25
2224099--2224180	26	3.0	27	79	12	71	57	1	2	39	1.20
2233549--2233588	19	2.1	19	86	9	55	65	10	0	25	1.24
2236156--2236199	10	4.4	10	86	8	63	20	0	13	65	1.26
2236141--2236195	21	2.7	21	91	5	87	18	0	20	61	1.34
2236242--2236293	23	2.2	23	82	3	68	36	7	7	48	1.61
2236656--2236705	21	2.3	21	78	21	59	44	0	2	54	1.11
2237972--2238004	14	2.3	15	94	5	59	45	0	3	51	1.16
2238328--2238377	24	2.1	24	85	3	66	28	2	2	68	1.12
2245070--2245214	17	8.5	17	75	15	106	73	0	15	11	1.14
2245070--2245176	27	4.2	26	81	11	123	73	0	16	9	1.08
2245070--2245150	9	9.8	8	90	5	101	75	0	14	9	1.05
2245068--2245211	9	17.1	8	71	13	51	73	0	14	11	1.13
2247347--2247392	19	2.4	20	89	7	69	15	2	10	71	1.23
2247928--2247985	23	2.6	22	73	13	55	51	3	6	37	1.46
2249753--2249844	40	2.3	40	80	10	102	75	4	4	16	1.13
2250715--2250758	13	3.5	12	84	3	52	50	6	2	40	1.42
2250920--2251305	119	3.2	119	78	4	438	44	14	22	18	1.86
2262651--2262707	28	2.0	29	86	3	80	28	1	7	63	1.30
2262842--2262884	18	2.4	19	73	11	54	72	2	9	16	1.21
2265520--2265555	17	2.1	17	89	0	54	30	0	2	66	1.06
2265818--2265869	26	2.0	26	88	3	77	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2270098--2270146	23	2.2	23	85	10	66	24	6	4	65	1.33
2270988--2271078	38	2.4	38	86	0	128	51	15	4	28	1.62
2275857--2275894	19	2.0	19	89	0	58	52	0	18	28	1.45
2277282--2277621	84	4.0	86	79	5	313	32	15	14	37	1.88
2278048--2278101	21	2.4	23	81	12	67	16	3	3	75	1.08
2277751--2279164	704	2.0	707	87	3	2015	38	12	12	37	1.80
2280670--2280700	2	15.0	2	93	6	53	48	3	0	48	1.17
2288787--2288827	11	3.5	12	81	12	50	63	0	4	31	1.15
2291422--2291463	3	14.0	3	100	0	84	66	0	0	33	0.92
2295261--2295315	22	2.4	24	82	11	71	56	3	0	40	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100