genome.fa.s168.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  93  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15997680--15997728	16	2.8	18	72	15	57	44	10	8	36	1.68
15996701--16024053	181	150.6	181	68	13	6468	40	8	10	41	1.68
15996701--16062633	719	91.2	712	68	13	14164	39	8	10	41	1.70
16007102--16007147	16	2.6	18	80	16	60	43	4	10	41	1.59
16007774--16008074	157	1.9	159	84	4	412	38	8	8	43	1.68
15996701--16014247	539	32.5	536	72	10	7348	39	8	10	41	1.69
16013343--16013390	16	2.7	18	78	12	55	41	6	12	39	1.68
16019609--16019940	164	2.0	164	85	2	443	41	6	10	40	1.66
16022060--16022095	16	2.1	17	90	10	56	44	8	5	41	1.58
16025093--16025240	48	3.3	48	65	26	131	45	6	5	43	1.51
16025057--16025315	87	3.0	87	91	1	412	40	7	6	44	1.60
16024153--16026297	181	12.0	181	74	9	1454	39	8	10	41	1.70
16024205--16026265	359	5.8	354	73	12	1066	39	8	10	41	1.70
16025980--16026589	314	1.9	314	87	3	888	40	7	10	41	1.67
16026350--16026797	181	2.5	180	79	6	476	42	6	12	38	1.69
16026640--16026965	163	2.0	164	80	7	369	43	8	10	37	1.70
16026963--16028994	180	11.4	180	76	7	1553	39	8	10	41	1.70
16028594--16029050	180	2.5	182	79	4	478	41	8	8	40	1.67
16028977--16029148	87	2.0	87	85	4	231	38	6	8	45	1.62
16029126--16030099	176	5.4	178	76	8	780	39	8	10	41	1.69
16028202--16029983	983	1.8	981	79	6	2100	40	8	10	40	1.70
16030001--16030268	134	2.0	132	81	5	306	39	10	10	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16030275--16030446	87	2.0	87	86	6	242	39	8	7	44	1.62
16030483--16031504	175	5.7	177	74	10	683	39	8	10	42	1.68
16031799--16031850	25	2.1	25	100	0	104	38	17	3	40	1.68
16030365--16033315	181	16.4	181	73	10	1735	39	8	9	41	1.69
16032916--16033294	177	2.1	181	80	5	423	40	11	8	39	1.72
16033846--16033934	46	1.9	46	88	0	133	30	15	10	43	1.80
16033887--16034164	115	2.4	115	84	3	364	36	13	6	43	1.71
16033887--16034153	57	4.7	57	81	4	304	37	14	7	41	1.73
16036379--16036711	183	1.8	183	81	3	411	43	7	9	40	1.64
16036230--16038034	180	10.1	178	76	6	966	39	7	10	42	1.68
16036230--16042510	359	17.8	362	68	13	1406	39	7	10	42	1.68
16036230--16038034	539	3.4	531	75	7	1328	39	7	10	42	1.68
16038089--16038898	182	4.5	175	75	10	580	39	8	9	42	1.69
16038907--16039514	179	3.4	178	77	7	466	39	7	9	42	1.67
16038907--16040070	181	6.5	181	76	7	966	39	7	10	41	1.70
16039371--16040699	696	1.9	696	78	6	1458	39	8	11	41	1.70
16040083--16042514	181	13.6	179	74	7	1435	39	7	10	42	1.68
16040333--16041617	539	2.4	540	77	7	1211	39	7	10	43	1.66
16041362--16041968	177	3.4	179	79	4	584	41	7	10	40	1.67
16042553--16047791	181	29.2	181	75	8	3370	39	8	10	41	1.70
16044308--16044653	167	2.1	166	82	6	405	39	7	8	43	1.64
16047369--16047409	20	2.0	20	86	9	57	51	4	7	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16047663--16047932	144	1.9	145	86	3	393	38	6	9	45	1.62
16047802--16053819	181	33.5	181	75	7	3897	40	8	9	41	1.68
16047813--16062679	361	41.1	359	69	13	4387	40	8	9	41	1.68
16047776--16059788	181	67.1	174	71	12	3608	39	8	9	41	1.68
16049013--16049045	18	1.9	17	88	11	50	48	6	6	39	1.53
16049932--16062629	542	23.7	526	73	11	3865	40	8	9	41	1.68
16053865--16059788	180	33.0	179	75	8	3773	39	8	9	42	1.68
16054914--16054946	18	1.9	17	88	11	50	48	6	6	39	1.53
16055094--16055126	18	1.9	17	88	11	50	48	6	6	39	1.53
16056374--16056677	168	1.8	167	82	4	387	39	7	9	43	1.65
16053886--16062679	540	16.4	538	75	9	4675	39	8	9	41	1.68
16056548--16059788	182	17.9	181	76	7	2482	39	8	9	42	1.68
16059660--16059935	153	1.8	152	81	5	342	40	7	11	39	1.71
16059813--16062635	181	15.7	178	76	7	2035	40	8	10	41	1.69
16059827--16062639	537	5.2	531	75	9	1888	40	8	10	40	1.69
16059842--16062634	718	3.9	718	77	7	2430	40	8	10	40	1.69
16062667--16067165	181	25.2	181	74	9	2932	41	10	8	39	1.70
16063626--16063967	183	1.9	182	81	6	415	42	9	8	39	1.68
16062667--16067165	363	12.6	356	74	9	2826	41	10	8	39	1.70
16066724--16067662	495	1.9	499	82	5	1202	42	11	7	38	1.70
16067172--16070081	182	16.3	181	74	8	1708	41	10	8	39	1.69
16067542--16067840	164	1.8	164	81	7	376	41	11	7	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16067783--16069091	362	3.6	365	77	4	941	42	9	7	40	1.67
16069015--16069808	177	4.4	177	77	10	448	42	9	9	38	1.69
16070473--16070517	19	2.4	19	85	3	56	60	2	0	37	1.09
16070512--16070557	22	2.1	21	88	4	65	45	10	6	36	1.65
16072731--16077218	181	25.2	178	76	8	2940	41	9	8	40	1.69
16077225--16082139	181	27.7	180	77	8	3720	42	9	8	39	1.68
16077580--16078075	164	3.0	159	76	13	424	43	11	6	38	1.68
16077737--16097249	362	54.7	360	74	9	12517	41	10	8	39	1.68
16082127--16097249	181	84.5	176	72	10	5627	41	10	8	40	1.68
16085460--16085494	18	2.1	17	89	10	54	51	11	0	37	1.38
16085902--16086226	169	1.9	169	83	5	424	42	9	5	42	1.61
16090280--16090593	165	1.9	164	81	1	378	41	9	7	40	1.67
16092205--16092253	20	2.5	20	93	6	82	36	10	10	42	1.73
16095042--16095074	18	1.9	17	88	11	50	39	6	6	48	1.53
16111287--16111319	18	1.9	17	88	11	50	48	3	6	42	1.43
16111180--16113205	181	11.3	186	72	11	480	40	7	9	42	1.65
16111345--16112166	361	2.3	350	79	6	844	40	7	9	42	1.66
16112048--16113270	181	6.8	181	76	8	983	41	7	8	42	1.65
16113128--16113167	16	2.5	16	87	0	53	30	0	2	67	1.04
16113135--16113432	162	1.8	163	83	5	397	39	6	9	44	1.62
16113274--16116354	181	17.1	179	74	9	2009	40	8	9	42	1.66
16112592--16113902	704	1.9	699	80	5	1572	40	7	8	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16113274--16116352	362	8.5	358	75	9	2230	40	8	9	42	1.66
16113302--16117157	181	21.5	175	72	11	1925	40	7	9	42	1.66
16114501--16114533	18	1.9	17	88	11	50	48	6	6	39	1.53
16115560--16115935	202	1.9	202	84	2	504	39	9	8	42	1.68
16117060--16117250	93	2.1	93	96	0	355	37	3	9	49	1.53
16117190--16117903	362	2.0	361	81	0	845	39	7	9	42	1.67
16117153--16117907	181	4.2	180	77	2	708	39	7	9	43	1.66
16117933--16120786	181	15.9	180	77	5	2220	40	8	9	41	1.69
16121142--16121927	181	4.4	177	75	8	526	44	8	8	39	1.64
16121482--16122458	511	1.9	509	78	7	1050	42	9	8	39	1.69
16121930--16128654	177	37.3	176	68	13	1979	41	10	8	39	1.69
16123333--16123379	18	2.7	18	83	12	62	44	10	2	42	1.51
16121931--16124386	537	4.6	526	77	7	1857	41	10	8	40	1.69
16120960--16124433	893	3.9	884	74	10	2317	42	10	8	39	1.68
16124334--16124538	105	2.0	102	85	10	274	48	7	9	34	1.65
16124436--16128205	180	21.3	177	73	10	1465	42	10	8	39	1.68
16125099--16128548	180	19.4	177	73	9	1527	42	10	7	38	1.69
16125099--16128563	357	9.8	359	74	8	2123	42	10	7	38	1.69
16126207--16131341	884	5.8	882	72	11	2590	42	10	8	39	1.69
16128060--16128092	18	1.9	17	88	11	50	42	6	3	48	1.43
16128248--16128280	17	2.0	17	88	5	50	39	12	0	48	1.40
16127077--16128563	530	2.8	533	77	7	1210	43	9	7	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16128850--16132457	181	20.1	181	74	8	2399	41	10	8	38	1.71
16128839--16132269	356	9.6	349	72	10	1417	41	10	8	38	1.71
16130318--16130350	18	1.9	17	88	11	50	42	6	3	48	1.43
16131931--16131983	16	3.0	18	75	13	56	41	9	7	41	1.66
16131931--16131963	18	1.9	17	88	11	50	39	6	6	48	1.53
16128881--16132457	895	4.0	884	75	9	2636	41	10	8	38	1.71
16133252--16134930	180	9.4	180	76	8	1244	40	8	9	41	1.67
16134813--16135049	120	2.0	120	86	1	332	45	8	10	34	1.70
16135251--16136018	181	4.3	178	76	9	634	40	7	9	41	1.66
16135948--16136074	67	1.9	67	87	7	188	43	7	11	38	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100