genome.fa.s168.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  100  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17759822--17759857	15	2.4	15	95	0	63	63	13	8	13	1.50
17762558--17763328	63	12.3	62	68	14	255	38	10	13	38	1.79
17762851--17763078	62	3.7	61	73	10	203	34	8	15	41	1.78
17762850--17763328	187	2.6	180	77	9	451	37	10	14	38	1.79
17766328--17766392	32	2.0	32	91	5	105	30	20	9	40	1.83
17769440--17769491	20	2.6	20	84	0	59	15	26	0	57	1.38
17770115--17770158	22	2.0	23	86	13	65	31	2	9	56	1.43
17770168--17770336	3	58.3	3	71	15	81	26	4	4	65	1.29
17770140--17770344	109	1.9	109	86	9	292	26	5	4	63	1.34
17770720--17770759	21	1.9	21	85	10	55	35	5	32	27	1.79
17771331--17771378	19	2.3	21	79	20	64	60	8	2	29	1.37
17771445--17771488	22	1.9	24	90	9	74	56	11	0	31	1.35
17780605--17780629	6	4.2	6	100	0	50	48	0	52	0	1.00
17781856--17781981	53	2.4	53	76	9	123	56	13	15	15	1.68
17783280--17783515	115	2.0	115	80	7	264	36	20	16	27	1.94
17783620--17783661	17	2.5	17	96	0	75	42	28	16	11	1.84
17787543--17787576	16	2.1	16	94	0	59	20	23	11	44	1.84
17790094--17790127	15	2.4	14	90	5	50	29	8	20	41	1.82
17790285--17790362	37	2.1	38	90	2	122	30	6	19	43	1.76
17790300--17790382	37	2.4	35	82	9	91	28	6	21	43	1.76
17792026--17792134	56	1.9	56	87	3	157	22	23	13	40	1.90
17792430--17792499	3	24.3	3	87	8	101	32	1	1	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17792430--17792499	23	3.0	23	91	4	97	32	1	1	64	1.11
17792432--17792499	20	3.2	20	87	6	91	32	1	1	64	1.11
17792606--17792642	5	7.0	5	88	11	56	0	24	0	75	0.80
17792606--17792654	17	3.1	17	88	11	70	0	22	0	77	0.77
17792606--17792651	12	4.2	11	89	10	60	0	23	0	76	0.79
17793462--17793502	19	2.2	18	91	4	64	14	2	2	80	0.92
17793709--17793755	21	2.3	21	85	3	60	59	6	2	31	1.34
17800960--17801633	200	3.4	199	81	4	710	42	12	12	32	1.79
17804289--17804319	7	4.4	7	95	0	53	48	0	0	51	1.00
17804287--17804366	30	2.7	29	83	9	99	46	0	0	53	1.00
17805035--17805997	241	4.0	235	82	4	1083	45	12	9	31	1.75
17807327--17807365	19	2.0	20	85	10	53	79	5	0	15	0.90
17807484--17807510	12	2.2	12	100	0	54	92	0	7	0	0.38
17807484--17807540	16	3.1	17	75	20	53	84	3	10	1	0.82
17812827--17812868	9	4.6	9	84	3	57	78	2	19	0	0.86
17812824--17812868	18	2.4	18	88	3	63	77	2	20	0	0.87
17818896--17818938	13	3.2	13	86	6	50	0	6	6	86	0.72
17826315--17826718	209	2.0	205	89	3	623	35	13	9	41	1.77
17828014--17828040	2	13.5	2	100	0	54	48	0	0	51	1.00
17830888--17830952	32	2.0	32	100	0	130	30	15	15	38	1.88
17832806--17832850	3	14.0	3	82	13	54	64	0	2	33	1.06
17832806--17832850	10	4.7	9	83	10	54	64	0	2	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833130--17833167	13	2.9	13	88	0	58	42	23	15	18	1.89
17833171--17833211	19	2.2	19	90	0	64	48	26	7	17	1.73
17838787--17838847	30	2.0	31	87	6	88	75	0	19	4	0.98
17838802--17838849	24	2.0	24	84	8	62	81	0	14	4	0.84
17839727--17839993	33	8.2	33	77	3	245	39	18	13	28	1.89
17839738--17839998	66	4.0	65	81	5	289	39	17	13	29	1.88
17839744--17839993	97	2.6	98	81	3	324	39	17	14	28	1.88
17839750--17840007	130	2.0	131	81	9	305	39	16	14	30	1.88
17839978--17840071	33	2.9	33	79	6	111	38	9	13	38	1.78
17839727--17840076	163	2.1	163	80	5	377	38	16	13	30	1.88
17839750--17840076	130	2.5	130	79	8	299	38	15	13	31	1.87
17842717--17842768	3	17.3	3	100	0	104	65	0	0	34	0.93
17842858--17842923	33	2.0	34	84	3	89	66	0	1	31	1.01
17842877--17842918	21	2.0	20	90	4	66	64	0	2	33	1.07
17843043--17843105	13	4.9	13	76	3	74	42	22	15	19	1.88
17843271--17843308	20	1.9	20	89	10	60	65	5	0	28	1.14
17843271--17843312	19	2.1	21	86	8	61	69	4	0	26	1.08
17846931--17847032	36	2.8	37	79	4	109	34	12	21	31	1.91
17851961--17852054	36	2.6	35	86	5	116	34	10	24	30	1.89
17852054--17852260	104	2.0	104	88	3	310	35	10	20	33	1.86
17855705--17855731	2	13.5	2	100	0	54	51	0	0	48	1.00
17857764--17857788	13	1.9	13	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17860015--17860040	3	8.7	3	100	0	52	34	30	0	34	1.58
17860045--17860078	16	2.1	16	88	0	50	5	20	0	73	1.04
17860348--17860374	14	1.9	14	100	0	54	77	22	0	0	0.76
17861404--17861436	15	2.3	15	89	5	50	72	0	3	24	0.98
17863474--17863508	11	3.3	11	88	4	54	74	8	8	8	1.23
17863475--17863519	22	2.0	22	82	0	54	77	6	8	6	1.11
17870374--17870417	22	2.0	23	90	4	72	84	0	6	9	0.79
17870377--17870422	19	2.4	18	89	7	65	80	0	10	8	0.91
17870392--17870421	15	2.0	15	93	0	51	83	0	6	10	0.81
17871326--17871378	21	2.4	23	87	6	74	71	3	7	16	1.24
17871815--17871866	8	6.4	8	75	20	54	71	1	1	25	1.07
17871819--17871865	16	2.8	17	90	9	71	72	2	2	23	1.06
17871819--17871865	17	2.8	18	87	9	64	72	2	2	23	1.06
17877190--17877268	39	2.0	39	92	0	131	34	16	12	36	1.87
17880775--17880800	2	13.0	2	100	0	52	0	50	0	50	1.00
17885015--17885339	163	2.0	161	93	1	560	34	21	16	27	1.94
17889346--17889422	30	2.6	30	91	4	120	45	19	16	18	1.86
17894733--17894764	15	2.1	15	100	0	64	18	12	6	62	1.50
17902100--17902133	16	2.2	16	89	5	52	35	0	14	50	1.44
17902121--17902218	10	9.9	10	76	12	69	42	2	5	50	1.36
17902134--17902208	19	3.8	19	87	10	98	46	2	2	48	1.30
17906549--17906598	20	2.5	19	78	9	55	80	2	14	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17908305--17908372	21	3.2	22	74	19	63	45	1	0	52	1.09
17908342--17908390	20	2.4	20	93	3	80	42	2	0	55	1.11
17918117--17918247	44	3.0	43	75	8	113	40	16	14	29	1.87
17918722--17918811	7	12.4	7	90	4	108	14	4	40	41	1.66
17918722--17918811	29	3.1	28	84	6	108	14	4	40	41	1.66
17922090--17922169	41	2.0	41	82	0	97	18	13	23	43	1.86
17922702--17922735	3	11.3	3	100	0	68	64	0	0	35	0.94
17923595--17923634	19	2.1	19	85	0	53	37	30	0	32	1.58
17923972--17924038	28	2.5	28	80	9	77	50	16	10	22	1.75
17930418--17930518	48	2.1	48	84	0	139	32	30	10	25	1.90
17930705--17930730	12	2.2	12	100	0	52	23	19	19	38	1.93
17931749--17931836	45	2.0	45	86	0	122	21	27	20	30	1.98
17938471--17938521	20	2.5	20	96	0	93	35	11	25	27	1.91
17938868--17938973	45	2.4	44	80	4	113	26	30	20	22	1.98
17938894--17938989	45	2.1	45	84	3	122	29	32	15	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100

The End!