genome.fa.s168.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  54  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9973681--9973821	59	2.4	59	81	1	156	42	2	0	53	1.20
9973723--9973820	30	3.3	29	84	2	106	45	3	1	50	1.24
9973809--9973899	36	2.6	35	77	18	91	59	1	0	39	1.05
9973856--9973915	27	2.1	27	84	6	75	61	1	0	36	1.06
9973853--9973928	27	2.6	30	74	20	70	64	1	1	32	1.10
9978698--9978722	2	12.5	2	100	0	50	48	0	0	52	1.00
9979229--9979345	61	1.9	62	84	7	148	35	11	15	36	1.84
9988250--9988318	34	2.0	34	97	0	129	28	7	15	47	1.72
9988863--9988963	41	2.5	40	80	7	114	29	6	11	51	1.65
9989522--9989559	20	1.9	20	84	10	51	39	2	7	50	1.46
9992928--9992992	23	3.0	23	84	13	93	36	4	9	49	1.56
9992953--9992996	13	3.6	13	72	27	51	34	4	9	52	1.54
9993156--9993225	37	1.9	36	91	2	113	41	11	11	35	1.77
9998436--9998509	35	2.1	35	82	7	89	37	14	6	40	1.73
9998553--9998642	17	5.2	17	83	4	117	32	6	12	48	1.66
9998552--9998642	35	2.6	35	92	1	148	32	6	12	48	1.66
9998556--9998644	18	5.1	18	83	4	119	30	7	12	49	1.69
10000395--10000463	27	2.6	25	80	15	68	21	1	2	73	1.04
10000422--10000463	14	3.2	13	77	16	50	23	0	0	76	0.79
10000392--10000465	29	2.6	29	77	12	73	22	1	2	72	1.04
10000641--10000684	23	1.9	23	95	0	79	38	4	6	50	1.50
10004092--10004122	6	5.3	6	92	7	55	70	29	0	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10009106--10009163	21	2.8	20	75	21	57	8	6	6	77	1.12
10010640--10010724	30	3.0	26	70	23	64	30	7	1	61	1.30
10011304--10011334	6	5.3	6	92	7	55	70	29	0	0	0.87
10018174--10018214	21	1.9	22	85	5	57	39	2	0	58	1.11
10020916--10020974	24	2.5	24	81	8	66	44	3	5	47	1.42
10021081--10021122	3	14.0	3	100	0	84	66	0	0	33	0.92
10021646--10021691	8	5.9	8	89	5	76	76	10	0	13	1.03
10021648--10021699	24	2.2	23	90	10	79	76	7	1	13	1.07
10021644--10021692	15	3.2	15	82	5	71	77	10	0	12	0.99
10024113--10024152	14	2.8	14	84	3	53	80	5	7	7	1.03
10026988--10027040	19	2.8	19	85	2	81	33	13	33	18	1.90
10026988--10027032	9	4.9	9	86	5	63	33	11	35	20	1.88
10031470--10031528	10	5.7	10	77	13	57	32	0	0	67	0.91
10036902--10037310	98	4.1	99	80	7	420	31	11	17	39	1.85
10036912--10037292	48	7.8	48	78	8	365	30	11	17	39	1.85
10037771--10037808	8	4.9	8	87	6	60	76	10	0	13	1.02
10037771--10037816	16	2.9	16	90	3	67	78	8	0	13	0.97
10037788--10037827	18	2.3	17	91	4	62	85	2	0	12	0.71
10037781--10037826	8	5.5	8	82	7	56	82	4	0	13	0.81
10038937--10038993	20	2.8	19	82	12	69	24	1	1	71	1.04
10041669--10041721	26	2.0	26	92	0	88	33	7	18	39	1.79
10044312--10044361	21	2.3	21	82	3	55	10	12	8	70	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045909--10045933	13	1.9	13	100	0	50	48	0	0	52	1.00
10047469--10047498	2	15.0	2	100	0	60	50	0	0	50	1.00
10047738--10047811	36	2.0	37	84	2	96	36	4	12	47	1.60
10052126--10052226	35	2.9	34	81	8	114	34	15	20	28	1.94
10052407--10052468	29	2.0	29	87	9	88	24	11	25	38	1.88
10055276--10055308	2	16.5	2	93	0	57	48	3	0	48	1.17
10055501--10055525	12	2.1	12	100	0	50	52	0	0	48	1.00
10059368--10059401	15	2.2	16	89	5	52	47	0	0	52	1.00
10061754--10061793	21	1.9	21	84	0	53	40	0	2	57	1.12
10062579--10062627	2	25.0	2	83	4	55	48	2	4	44	1.33
10062902--10062929	2	14.0	2	100	0	56	50	0	0	50	1.00
10064092--10064140	15	3.0	17	79	11	66	55	0	0	44	0.99
10064180--10064228	18	2.6	17	78	15	53	57	0	0	42	0.99
10066622--10066660	20	2.0	20	89	0	60	43	0	2	53	1.14
10066863--10066932	24	3.0	22	69	10	59	44	11	5	38	1.64
10066950--10067017	29	2.3	30	87	2	93	52	1	0	45	1.09
10072337--10072372	18	2.0	17	89	10	54	61	0	8	30	1.26
10072766--10072795	10	3.1	10	95	4	53	63	0	0	36	0.95
10074744--10074796	22	2.3	23	87	3	81	56	0	3	39	1.17
10075037--10075066	2	15.0	2	100	0	60	50	0	0	50	1.00
10075111--10075146	2	18.0	2	100	0	72	50	0	0	50	1.00
10075026--10075176	76	2.0	74	96	2	275	31	6	16	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10077486--10077523	20	2.0	20	84	5	51	68	5	0	26	1.11
10078422--10078461	21	2.0	20	85	5	53	65	0	0	35	0.93
10078858--10078897	17	2.4	17	86	0	53	70	5	0	25	1.08
10077414--10079558	943	2.3	931	81	6	2450	52	5	10	31	1.59
10079131--10079606	212	2.2	213	79	8	471	52	5	10	32	1.58
10079594--10079638	18	2.4	19	81	7	56	64	6	6	22	1.41
10079717--10079758	22	1.9	22	85	9	59	71	7	7	14	1.29
10079792--10079838	16	3.1	16	78	12	53	51	0	2	46	1.13
10079796--10079841	14	3.1	15	84	9	58	52	0	2	45	1.13
10080803--10080870	29	2.4	28	85	2	91	30	1	1	66	1.10
10080816--10080888	29	2.5	29	88	4	103	34	2	1	61	1.19
10093345--10093384	20	2.0	20	90	0	62	20	30	27	22	1.98
10093678--10093711	11	2.9	12	86	8	52	20	0	0	79	0.73
10094027--10094095	31	2.2	31	87	10	97	18	26	26	28	1.98
10094161--10094203	19	2.3	19	91	0	68	27	32	18	20	1.96
10094425--10094458	5	6.6	5	86	6	50	20	44	35	0	1.52
10094546--10095137	152	3.8	152	94	2	977	29	14	18	38	1.89
10100389--10100418	15	2.1	14	93	6	51	50	6	36	6	1.55
10105124--10105181	8	6.8	8	86	11	53	81	1	6	10	0.95
10105124--10105165	10	4.6	9	88	11	59	85	2	2	9	0.77
10105124--10105181	17	3.3	17	85	4	71	81	1	6	10	0.95
10105135--10105220	17	4.8	17	76	19	77	75	0	12	11	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10105122--10105227	9	11.8	9	77	17	87	75	0	12	11	1.10
10105150--10105239	46	1.9	47	91	6	148	72	0	16	11	1.12
10105135--10105239	37	2.9	36	77	12	101	74	0	14	11	1.08
10106245--10106769	40	13.0	40	89	7	778	22	16	21	39	1.92
10106245--10106769	81	6.5	81	93	4	866	22	16	21	39	1.92
10108656--10108695	3	13.7	3	89	5	64	35	2	0	62	1.09
10108654--10108695	17	2.4	17	92	4	66	35	2	0	61	1.09
10108656--10108693	20	1.9	20	94	0	67	34	2	0	63	1.09
10109093--10109139	23	2.0	23	95	0	85	53	4	2	40	1.32
10109713--10109765	16	3.4	16	79	5	65	64	0	3	32	1.12
10110699--10110747	18	2.6	17	78	15	53	57	0	0	42	0.99
10110732--10110800	30	2.3	31	82	12	90	42	1	0	56	1.08
10113380--10113449	24	3.0	22	69	10	59	44	11	5	38	1.64
10113462--10113534	29	2.5	30	84	2	94	52	1	1	45	1.18
10113785--10113828	21	2.1	21	100	0	88	38	25	18	18	1.92
10117106--10117143	20	2.0	20	89	5	60	60	13	0	26	1.33
10117799--10117833	16	2.2	16	89	0	52	14	0	34	51	1.42
10119162--10119194	10	3.3	10	100	0	66	12	9	51	27	1.69
10119336--10119364	3	9.7	3	100	0	58	34	0	0	65	0.93
10119683--10119750	23	3.0	23	87	6	77	29	19	25	26	1.98
10119690--10119750	23	2.7	23	90	7	90	29	19	26	24	1.99
10119574--10119854	133	2.1	131	85	3	377	35	18	21	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10119736--10119968	109	2.1	109	83	5	301	38	17	19	24	1.93
10119942--10119990	23	2.1	23	84	0	62	34	16	20	28	1.94
10119845--10120366	133	3.9	132	84	3	629	36	16	21	25	1.94
10120065--10120112	22	2.2	22	85	7	62	22	10	33	33	1.88
10120189--10120256	23	3.0	23	89	2	93	29	20	22	27	1.98
10120211--10120476	110	2.4	110	87	0	379	37	19	20	23	1.94
10120085--10120611	243	2.2	243	86	0	721	37	17	20	23	1.93
10120432--10120492	23	2.7	23	87	7	81	27	22	24	24	2.00
10120322--10120609	133	2.2	133	87	1	409	37	19	19	23	1.94
10120432--10120500	23	3.0	23	83	6	79	30	21	23	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100