genome.fa.s168.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  99  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17562195--17562475	114	2.4	112	84	5	330	35	14	18	31	1.91
17562315--17562481	86	1.9	86	83	0	217	35	14	18	31	1.92
17562227--17562462	57	4.1	57	75	10	178	36	14	17	31	1.91
17562643--17562702	31	1.9	32	82	3	77	3	16	3	76	1.05
17566139--17566181	18	2.3	19	84	11	54	65	11	2	20	1.36
17567869--17567911	16	2.7	15	89	10	68	53	2	18	25	1.56
17571874--17571915	18	2.2	19	83	8	50	19	2	2	76	1.01
17576713--17576783	22	3.3	22	62	15	58	28	7	15	49	1.70
17576696--17576783	42	2.1	42	89	4	133	28	6	14	50	1.69
17579388--17579452	23	2.9	21	77	20	69	16	1	4	76	1.02
17579387--17579454	12	5.9	11	74	16	57	16	1	4	77	0.99
17579411--17579453	17	2.5	17	85	11	52	13	2	2	81	0.89
17579406--17579461	28	2.0	28	83	13	71	16	3	1	78	0.97
17583345--17583580	121	1.9	122	83	4	307	36	9	5	48	1.60
17586370--17586426	17	3.5	17	72	13	57	21	0	14	64	1.28
17591929--17592023	45	2.1	45	86	1	129	34	24	12	28	1.92
17591929--17592001	22	3.3	22	75	3	83	35	24	10	28	1.90
17593212--17593402	46	4.3	45	77	8	178	29	10	16	43	1.81
17593387--17593435	25	2.0	25	87	0	71	18	12	20	48	1.79
17593348--17593478	68	1.9	68	87	6	194	25	11	16	45	1.81
17593412--17593579	43	3.9	44	83	10	179	27	11	16	44	1.82
17593412--17593579	87	1.9	86	81	10	200	27	11	16	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17594665--17594729	15	4.0	16	75	22	64	23	0	12	64	1.27
17595384--17595429	24	2.0	23	95	4	83	50	21	6	21	1.71
17595386--17595436	24	2.2	24	89	6	79	50	23	5	19	1.69
17595688--17595865	42	4.2	42	81	10	186	42	20	9	27	1.83
17601847--17601881	14	2.5	15	86	13	56	20	2	0	77	0.90
17601846--17601907	24	2.5	24	84	7	72	19	3	0	77	0.90
17604819--17605052	50	4.8	47	80	7	245	39	18	12	28	1.88
17604819--17605052	98	2.4	97	87	5	337	39	18	12	28	1.88
17605823--17605851	13	2.3	13	94	5	51	6	10	0	82	0.83
17615481--17615518	20	1.9	20	94	0	67	7	0	15	76	1.01
17617140--17617177	18	2.1	19	85	5	51	31	0	0	68	0.90
17617290--17617341	27	2.0	26	88	7	79	73	3	0	23	1.00
17619824--17619870	11	4.3	11	78	8	51	25	0	2	72	0.96
17619830--17619916	4	21.5	4	72	16	56	22	2	4	70	1.18
17619823--17619916	21	4.7	20	73	13	68	22	2	4	71	1.14
17620831--17620904	18	4.0	18	71	20	55	71	0	4	24	1.03
17620874--17620904	16	1.9	16	93	0	53	74	0	3	22	0.96
17621081--17621124	23	1.9	23	86	9	63	38	0	0	61	0.96
17622825--17622855	1	31.0	1	93	0	53	0	3	0	96	0.21
17623301--17623326	1	26.0	1	100	0	52	100	0	0	0	0.00
17635792--17636286	117	4.2	118	79	8	524	34	10	7	47	1.67
17635792--17636286	59	8.4	58	80	9	479	34	10	7	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17636358--17636392	4	8.8	4	100	0	70	51	0	0	48	1.00
17637555--17637959	85	4.8	85	80	2	413	43	14	19	21	1.87
17637555--17637940	170	2.3	170	85	1	524	44	14	19	22	1.87
17638017--17638230	84	2.5	84	77	8	229	48	14	15	21	1.80
17639126--17639275	67	2.3	66	87	5	221	16	14	6	62	1.51
17639198--17639384	59	3.2	59	86	0	250	17	15	9	57	1.64
17649911--17650244	61	5.5	58	78	12	325	35	10	6	47	1.65
17656939--17656972	12	2.8	12	83	16	52	26	5	2	64	1.30
17657027--17657074	21	2.3	21	85	7	62	72	4	0	22	1.01
17660408--17660446	10	3.8	10	86	6	51	25	2	12	58	1.47
17672631--17672676	13	3.1	15	78	15	51	78	4	2	15	1.01
17673790--17673882	48	1.9	48	86	0	132	27	17	8	46	1.77
17673814--17673867	27	1.9	29	85	7	76	22	18	9	50	1.75
17673947--17674017	20	3.5	21	75	7	58	35	19	8	36	1.82
17674171--17674347	38	4.8	38	80	9	206	30	12	12	44	1.79
17674248--17674298	16	3.2	16	77	5	68	33	13	15	37	1.87
17674211--17674342	69	1.9	69	90	0	210	31	12	12	43	1.80
17674422--17674549	22	6.0	21	72	11	98	31	5	14	49	1.66
17674427--17674724	44	6.6	44	71	11	174	30	7	14	47	1.73
17674421--17674506	20	4.1	20	75	11	82	31	5	12	50	1.64
17674421--17674549	64	2.0	64	87	3	188	31	5	13	49	1.65
17674586--17674662	23	3.4	23	71	7	59	29	11	14	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17675643--17675746	43	2.5	42	79	4	120	25	13	16	45	1.83
17675895--17675938	21	2.1	21	82	0	52	79	2	11	6	1.01
17676093--17676173	30	2.7	30	84	0	99	51	1	16	30	1.52
17679725--17679766	16	2.7	15	85	7	57	30	0	2	66	1.04
17681159--17681216	28	2.1	28	83	6	73	58	6	5	29	1.46
17682302--17682344	21	2.0	22	86	4	61	51	2	4	41	1.35
17685886--17686006	31	3.8	31	73	6	100	49	9	3	38	1.51
17685886--17686005	63	1.9	64	84	3	163	49	9	3	38	1.51
17686379--17686427	18	2.8	16	75	19	53	38	6	0	55	1.25
17695088--17695116	15	1.9	15	100	0	58	27	0	0	72	0.85
17695089--17695124	15	2.4	15	90	0	54	27	2	2	66	1.19
17699489--17699545	29	2.0	30	83	13	75	47	3	0	49	1.18
17699622--17699682	17	3.4	18	80	11	63	72	1	0	26	0.94
17699627--17699686	21	2.7	21	80	16	68	70	1	0	28	0.97
17705454--17705501	25	1.9	25	83	8	62	50	0	0	50	1.00
17705693--17705737	20	2.2	21	84	11	58	48	2	11	37	1.51
17705556--17705726	74	2.3	74	80	4	184	49	5	9	35	1.59
17706017--17706133	40	2.9	40	83	0	144	41	5	14	38	1.68
17705915--17706226	149	2.1	147	83	5	378	44	5	12	36	1.67
17713099--17713142	22	2.0	22	91	8	72	31	9	13	45	1.75
17718607--17718664	14	3.9	14	75	18	55	68	0	0	31	0.89
17718608--17718664	16	3.8	15	73	13	55	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17722654--17722694	18	2.4	17	91	4	64	70	0	2	26	0.99
17722694--17722729	18	1.9	19	88	5	56	75	0	13	11	1.06
17726446--17726483	3	12.7	3	100	0	76	65	0	0	34	0.93
17733485--17733525	20	2.0	20	100	0	82	31	14	19	34	1.92
17735303--17735353	21	2.5	21	83	3	59	56	17	1	23	1.51
17735309--17735353	21	2.2	22	80	15	60	57	17	2	22	1.50
17735832--17736282	159	2.8	157	78	8	452	38	21	6	34	1.78
17739476--17739509	16	2.1	17	88	5	52	14	14	8	61	1.55
17742321--17742373	25	2.1	25	100	0	106	26	0	11	62	1.29
17744273--17744306	14	2.4	14	90	0	50	44	23	8	23	1.81
17744367--17744462	46	2.1	46	96	0	174	44	28	1	26	1.61
17744428--17744575	13	11.3	13	73	13	117	41	38	2	17	1.64
17744387--17744579	7	29.4	7	70	14	108	41	36	2	19	1.66
17745463--17745525	25	2.5	25	87	5	83	30	11	7	50	1.66
17746166--17746204	16	2.5	16	87	4	62	87	0	12	0	0.55
17746329--17746385	17	3.4	17	80	20	66	84	8	1	5	0.84
17746329--17746385	26	2.3	24	77	11	69	84	8	1	5	0.84
17747077--17747183	35	3.0	37	73	12	105	33	20	11	34	1.88
17747107--17747211	35	2.9	35	79	8	104	34	21	9	34	1.86
17750521--17750553	13	2.5	13	90	9	50	75	0	24	0	0.80
17753208--17753242	18	1.9	18	88	0	52	74	2	17	5	1.14
17753967--17754030	31	2.2	31	83	13	82	20	4	14	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17756651--17756702	20	2.6	19	84	6	68	46	32	1	19	1.61
17756665--17756825	6	25.0	6	70	13	72	40	34	3	21	1.71
17756668--17756777	19	5.8	18	74	11	60	40	36	3	20	1.70
17756648--17756778	64	2.0	65	80	10	144	41	36	3	19	1.67
17756728--17756820	20	4.8	18	76	10	69	39	33	2	24	1.67
17756968--17756997	13	2.3	13	94	0	51	30	0	0	70	0.88
17757263--17757298	7	5.6	7	84	15	51	77	0	22	0	0.76
17757262--17757299	19	2.1	18	95	5	67	78	0	21	0	0.74
17759301--17759501	56	3.7	55	72	12	132	25	17	12	43	1.85
17759379--17759485	49	2.2	49	86	8	148	25	19	12	42	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100