genome.fa.s168.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  77  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13855715--13855786	27	2.5	28	78	19	60	22	6	1	69	1.20
13860342--13860384	20	2.2	20	95	0	77	39	2	0	58	1.11
13860361--13860465	31	3.5	30	80	6	97	40	5	0	52	1.32
13860361--13860460	29	3.3	30	80	2	103	43	4	1	52	1.27
13860491--13860566	29	2.6	29	79	6	82	55	2	3	38	1.33
13861008--13861069	22	2.8	22	76	11	63	20	4	1	72	1.12
13861022--13861084	28	2.2	28	83	5	74	19	3	4	73	1.15
13864837--13864880	9	5.1	9	81	18	58	77	0	9	13	0.99
13864837--13864880	15	2.6	17	86	13	56	77	0	9	13	0.99
13864852--13864880	15	1.9	15	100	0	58	82	0	6	10	0.83
13864850--13864984	63	2.1	64	83	6	168	57	4	14	22	1.55
13866208--13866602	86	4.6	86	78	3	339	32	15	13	39	1.86
13866218--13866580	172	2.1	172	82	1	431	32	14	13	39	1.86
13866532--13866581	17	2.9	18	75	16	52	38	14	14	34	1.85
13866520--13866648	68	1.9	68	85	0	177	33	17	14	34	1.91
13867282--13867323	22	1.9	22	85	9	59	19	0	4	76	0.96
13867365--13867457	46	2.0	46	89	4	143	35	8	13	41	1.76
13867846--13867925	28	2.8	28	85	7	108	58	1	2	37	1.19
13867851--13867937	28	3.0	26	85	9	84	59	2	3	34	1.27
13868099--13868163	17	3.7	17	67	15	51	50	3	0	46	1.17
13869280--13869370	3	30.0	3	93	2	119	62	0	5	31	1.18
13875018--13875051	15	2.2	15	89	5	50	76	2	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13877203--13877264	17	3.8	16	86	4	79	30	9	17	41	1.82
13877205--13877275	33	2.1	35	86	5	101	29	9	14	46	1.76
13877209--13877277	17	4.1	17	83	5	68	28	11	15	43	1.82
13877309--13877517	114	1.8	116	86	4	307	40	13	11	33	1.81
13877600--13877691	46	2.0	46	83	8	116	38	10	8	42	1.71
13877780--13877827	21	2.3	21	88	0	78	47	16	4	31	1.65
13878039--13878091	20	2.7	20	96	0	97	37	9	15	37	1.79
13879012--13879049	9	4.3	9	90	6	51	13	15	0	71	1.16
13879017--13879050	17	2.0	17	94	0	59	11	14	0	73	1.10
13879017--13879051	9	4.0	9	88	7	54	11	14	0	74	1.08
13881294--13881318	13	1.9	13	100	0	50	12	0	8	80	0.92
13881952--13882015	29	2.2	29	86	2	85	48	6	14	31	1.68
13884607--13884639	16	2.0	17	88	5	50	18	0	24	57	1.40
13888980--13889012	14	2.4	14	90	10	50	0	15	0	84	0.61
13890296--13890331	16	2.1	18	90	10	58	72	0	2	25	0.98
13890680--13890724	22	2.0	22	87	8	65	28	4	0	66	1.11
13890822--13890864	22	2.0	22	85	0	59	48	6	2	41	1.43
13891861--13891922	30	2.1	30	81	0	70	32	14	24	29	1.94
13895714--13895748	2	17.5	2	100	0	70	48	0	0	51	1.00
13899503--13899531	3	9.7	3	100	0	58	65	0	0	34	0.93
13900457--13900489	3	11.0	3	93	0	57	66	3	0	30	1.06
13900457--13900510	9	6.0	9	91	0	63	66	12	0	20	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13901657--13901703	12	4.0	12	78	13	53	10	0	17	72	1.12
13902464--13902798	72	4.7	72	76	8	258	45	7	7	38	1.62
13902958--13903143	75	2.5	75	80	11	206	44	8	6	40	1.61
13902958--13903241	74	3.9	75	73	16	204	44	8	8	39	1.64
13903907--13904006	34	2.9	34	73	5	94	27	13	7	53	1.65
13907182--13907244	22	3.0	20	80	11	63	38	0	0	61	0.96
13907409--13907454	11	4.5	11	76	23	55	56	0	0	43	0.99
13907414--13907459	18	2.5	19	85	7	67	56	2	0	41	1.11
13908556--13908623	27	2.5	28	83	7	86	45	0	1	52	1.09
13922979--13923022	17	2.6	17	88	0	70	45	34	0	20	1.51
13924435--13924491	28	2.0	28	100	0	114	42	19	14	24	1.88
13934550--13934639	47	1.9	47	93	0	153	33	6	6	53	1.53
13935699--13935754	30	1.9	28	86	13	78	67	12	8	10	1.41
13935699--13935739	15	2.7	16	77	11	50	65	17	9	7	1.44
13937088--13937239	69	2.3	64	85	5	187	49	8	5	36	1.58
13937429--13937584	77	2.0	76	93	3	269	31	2	7	58	1.40
13937450--13937607	77	2.1	76	85	5	212	35	2	6	55	1.41
13938684--13938717	16	2.1	17	94	5	61	0	0	88	11	0.52
13938685--13938716	12	2.8	12	95	4	57	0	0	93	6	0.34
13938685--13938717	17	1.9	17	93	0	57	0	0	90	9	0.44
13939385--13939465	29	2.6	32	81	16	100	48	0	1	50	1.08
13950184--13950213	13	2.4	12	89	10	51	6	0	26	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13955027--13955087	3	20.3	3	80	6	61	34	3	27	34	1.73
13955027--13955094	24	3.0	24	72	16	63	32	4	26	36	1.76
13956657--13956700	19	2.3	19	88	7	63	25	4	22	47	1.70
13957753--13957787	12	2.9	12	91	0	52	28	14	22	34	1.93
13961717--13961755	18	2.2	18	86	13	55	33	0	0	66	0.92
13961720--13961755	19	1.9	20	88	11	58	33	0	0	66	0.92
13963453--13963492	15	2.6	16	84	15	57	20	2	2	75	1.04
13963444--13963492	25	2.0	25	84	8	64	20	2	2	75	1.00
13964854--13964905	19	2.8	19	79	2	61	17	3	7	71	1.25
13966381--13966457	41	1.9	40	84	10	104	67	0	2	29	1.04
13967513--13967761	54	4.6	53	75	6	196	26	28	12	32	1.93
13972441--13972474	17	2.0	17	100	0	68	35	11	5	47	1.65
13973641--13973797	52	3.0	51	83	9	201	25	24	9	40	1.85
13973822--13973852	11	2.8	11	100	0	62	51	29	0	19	1.47
13974189--13974272	31	2.7	31	87	5	116	26	23	21	28	1.99
13974757--13974913	52	3.0	51	83	9	201	25	24	9	40	1.85
13975831--13975987	52	3.0	52	84	7	194	25	22	9	42	1.84
13976012--13976053	11	3.8	11	90	0	66	50	30	0	19	1.48
13976012--13976054	22	2.0	22	95	0	77	48	30	0	20	1.50
13980410--13980449	17	2.4	17	86	0	53	65	2	0	32	1.06
13981640--13981684	3	15.0	3	100	0	90	66	0	0	33	0.92
13984613--13984656	23	1.9	23	86	9	63	56	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13985214--13985267	23	2.2	26	80	12	60	55	1	3	38	1.28
13985405--13985437	15	2.2	15	89	10	50	66	0	0	33	0.92
13987147--13987197	21	2.5	20	75	6	57	13	23	19	43	1.87
13995926--13996117	21	9.2	21	71	15	139	46	5	1	46	1.32
13995894--13996035	67	2.1	67	83	13	177	46	4	1	47	1.33
13996023--13996059	17	2.2	17	90	0	56	40	2	0	56	1.13
13996074--13996109	18	1.9	19	88	5	56	58	5	0	36	1.22
13996279--13996325	14	3.3	15	76	8	53	53	0	0	46	1.00
13996411--13996753	57	6.1	57	74	12	262	41	2	4	52	1.32
13996578--13996611	17	1.9	18	94	5	61	50	2	0	47	1.16
13996570--13996753	28	6.4	29	80	6	196	40	2	3	53	1.29
13996661--13996738	18	4.2	18	73	15	68	37	1	5	56	1.30
13996599--13996790	57	3.4	54	75	11	136	38	3	4	54	1.35
13996861--13996901	21	1.9	22	85	14	59	46	0	4	48	1.23
13996881--13996914	17	2.0	17	94	0	59	44	0	0	55	0.99
13996885--13996928	14	3.2	13	78	9	52	43	0	0	56	0.99
13996875--13996988	28	4.0	28	72	11	97	42	1	3	52	1.28
14002201--14002247	17	2.9	16	81	9	51	40	0	0	59	0.97
14002879--14002921	15	2.7	15	85	7	59	53	0	0	46	1.00
14002879--14002979	19	5.8	17	77	12	80	53	0	0	44	1.13
14002908--14002980	17	3.9	19	68	16	55	54	1	1	42	1.17
14002993--14003061	16	4.3	15	74	17	59	37	1	0	60	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14002993--14003216	31	7.4	31	74	13	182	41	1	1	54	1.19
14003013--14003064	13	3.8	13	82	12	61	42	0	0	57	0.98
14003041--14003219	95	1.9	95	89	4	281	43	1	2	53	1.20
14003114--14003178	18	3.9	18	75	22	70	41	0	3	55	1.15
14003068--14003154	23	4.0	23	73	14	94	43	0	2	54	1.13
14004571--14004641	36	2.0	36	97	0	133	25	7	16	50	1.70
14005689--14005717	2	14.5	2	100	0	58	51	0	0	48	1.00
14006173--14006289	31	3.8	30	69	16	87	29	6	23	41	1.80
14009421--14009456	12	3.1	11	88	11	54	66	0	0	33	0.92
14010477--14010531	27	2.0	27	92	0	92	34	18	10	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100