genome.fa.s168.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  84  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14979877--14980016	48	3.0	46	82	10	169	48	4	11	35	1.59
14982494--14982539	8	5.8	8	85	7	58	19	2	4	73	1.10
14983225--14983281	22	2.5	22	80	16	62	61	14	1	22	1.42
14983612--14983738	23	5.3	23	69	20	73	74	1	2	22	1.02
14983634--14983738	6	17.3	6	74	9	88	74	0	1	22	0.98
14984061--14984285	79	2.8	82	77	4	231	41	18	14	24	1.88
14984000--14984280	41	6.9	41	77	6	205	38	20	15	24	1.92
14984566--14984670	43	2.5	42	78	12	115	34	17	11	37	1.85
14986050--14986122	37	2.0	37	84	10	96	9	21	0	68	1.18
14988610--14988766	52	3.0	52	88	3	201	26	24	8	40	1.83
14988791--14988832	11	3.8	11	83	0	57	54	26	0	19	1.44
14996839--14997177	162	2.1	162	99	0	669	37	15	8	38	1.78
14997208--14997536	172	1.9	173	83	3	421	38	13	11	36	1.80
15002097--15002691	304	2.0	304	83	0	769	36	14	12	35	1.85
15004791--15004838	19	2.5	20	83	6	64	43	2	2	52	1.24
15005800--15005852	18	3.1	17	77	17	56	67	0	1	30	1.01
15007851--15007877	13	2.1	13	100	0	54	37	7	14	40	1.74
15015172--15015196	8	3.1	8	100	0	50	12	16	24	48	1.79
15017059--15017084	1	26.0	1	100	0	52	0	0	0	100	0.00
15019101--15019148	13	3.4	14	85	11	62	16	0	33	50	1.46
15019104--15019155	14	3.8	13	79	7	50	17	0	32	50	1.47
15019129--15019187	22	2.6	22	78	5	64	16	0	35	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15019129--15019195	8	8.6	8	73	12	50	16	0	35	47	1.47
15019160--15019211	16	3.2	16	81	10	54	15	0	38	46	1.46
15019146--15019226	40	2.0	40	81	9	94	22	0	32	45	1.52
15019184--15019226	16	2.7	16	85	7	61	23	0	32	44	1.54
15019495--15019530	17	2.2	17	90	5	56	19	8	0	72	1.10
15021638--15021684	22	2.1	22	88	0	67	25	19	21	34	1.96
15021535--15021767	106	2.2	106	86	3	317	35	16	15	32	1.90
15021659--15021936	84	3.3	84	82	2	315	33	14	16	35	1.89
15021837--15022059	106	2.1	106	88	1	331	31	12	19	35	1.89
15022305--15022345	18	2.3	18	86	0	55	36	12	26	24	1.91
15022425--15022490	26	2.5	26	82	4	80	27	13	18	40	1.88
15022662--15022701	17	2.4	16	87	4	62	0	10	2	87	0.63
15022662--15022699	11	3.5	11	82	3	51	0	7	2	89	0.57
15023909--15023934	13	2.0	13	100	0	52	0	7	0	92	0.39
15023905--15023934	14	2.1	15	93	6	53	0	10	0	90	0.47
15030933--15030972	18	2.2	18	95	0	71	45	10	7	37	1.66
15031584--15031616	17	1.9	17	93	0	57	24	12	0	63	1.28
15031605--15031629	13	1.9	13	100	0	50	28	0	0	72	0.86
15031718--15031782	3	21.7	3	93	6	114	32	1	0	66	1.01
15031839--15031872	10	3.4	10	87	0	50	26	2	2	67	1.19
15033201--15033229	6	4.8	6	100	0	58	51	0	0	48	1.00
15034384--15034428	23	2.0	23	81	0	54	55	13	6	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15036275--15036306	1	32.0	1	100	0	64	0	0	0	100	0.00
15036572--15036617	17	2.8	16	81	18	58	78	8	10	2	1.05
15037354--15037426	2	39.0	2	74	17	59	52	4	0	43	1.20
15038071--15038104	16	2.0	18	88	11	54	52	8	0	38	1.33
15038497--15038548	3	17.7	3	88	4	79	28	1	0	69	0.99
15039630--15039681	16	3.3	16	74	12	54	23	0	1	75	0.91
15041177--15041223	23	2.1	21	81	14	51	78	6	2	12	1.02
15041184--15041223	21	1.9	21	85	10	55	77	7	2	12	1.07
15041352--15041385	16	2.0	18	88	11	54	52	8	0	38	1.33
15041701--15041768	35	2.0	34	82	8	84	57	0	5	36	1.23
15041783--15041829	3	15.7	3	100	0	94	31	0	0	68	0.90
15041828--15041859	3	10.7	3	100	0	64	0	0	31	68	0.90
15049389--15049433	22	2.0	24	86	8	67	53	8	8	28	1.62
15053309--15053345	17	2.1	19	90	10	60	16	8	2	72	1.19
15055085--15055121	18	2.1	18	90	5	58	40	5	13	40	1.67
15055642--15055696	2	28.0	2	85	3	76	56	0	0	43	0.99
15056289--15056335	18	2.7	18	75	15	53	40	0	0	59	0.97
15057276--15057351	35	2.2	35	95	0	134	57	11	6	23	1.57
15060017--15060044	2	14.0	2	100	0	56	50	0	0	50	1.00
15060987--15061050	29	2.2	30	91	2	103	35	14	12	37	1.83
15063221--15063271	19	2.7	19	78	0	57	45	37	1	15	1.58
15063259--15063334	7	11.7	7	73	16	65	47	39	3	9	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15063269--15063334	19	3.4	19	85	4	78	45	40	4	9	1.56
15063259--15063294	12	3.0	12	91	0	54	50	36	2	11	1.53
15071919--15071981	31	2.0	31	85	11	85	30	17	11	41	1.84
15072168--15072569	9	41.8	9	66	18	107	61	4	3	30	1.32
15072269--15072340	21	3.8	20	75	15	64	65	1	4	29	1.20
15072469--15072583	20	5.9	20	70	24	70	66	6	2	25	1.28
15072518--15072585	9	7.2	9	80	14	66	70	4	2	22	1.18
15072514--15072578	28	2.3	29	83	2	87	70	4	1	23	1.14
15072543--15072583	11	3.9	11	81	12	50	63	4	4	26	1.35
15072518--15072585	20	3.6	19	80	9	77	70	4	2	22	1.18
15072527--15072601	38	2.0	38	84	10	100	64	4	5	26	1.33
15072693--15072738	13	3.8	13	72	21	55	76	2	0	21	0.90
15073021--15073053	16	2.0	17	88	5	50	42	3	3	51	1.32
15073093--15073150	29	2.0	29	80	9	66	41	3	1	53	1.28
15073295--15073354	32	1.9	31	82	3	75	43	1	3	51	1.28
15073343--15073421	19	4.4	19	81	12	78	30	0	11	58	1.33
15073360--15073602	10	25.0	9	66	17	69	33	0	8	56	1.35
15073343--15073421	18	4.4	19	84	7	76	30	0	11	58	1.33
15073360--15073432	18	3.9	19	82	7	87	36	0	8	54	1.30
15073378--15073428	9	5.7	9	81	6	59	37	0	5	56	1.23
15073461--15073586	20	6.4	19	74	13	78	30	0	7	61	1.30
15073503--15073590	29	3.0	29	75	21	78	35	0	7	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15073332--15073586	10	26.5	10	66	18	62	32	0	9	57	1.35
15076793--15076821	2	14.5	2	100	0	58	48	0	0	51	1.00
15091736--15091987	1	252.0	1	67	0	54	80	11	5	2	0.98
15091737--15091987	33	7.2	34	71	16	128	80	11	5	2	0.98
15091734--15091989	16	15.8	16	69	18	92	79	12	5	2	1.00
15093130--15093182	21	2.6	21	85	8	65	11	22	18	47	1.81
15093156--15093273	41	3.0	37	90	6	130	11	20	18	50	1.77
15093178--15093273	41	2.3	41	98	0	183	11	18	17	52	1.74
15093247--15093291	22	2.0	22	95	0	81	15	17	11	55	1.68
15093180--15093375	106	1.9	104	88	2	293	14	18	16	50	1.79
15093206--15093330	65	2.0	63	90	3	196	13	19	16	50	1.78
15093269--15093384	41	2.8	41	85	5	144	16	18	15	49	1.80
15097053--15097272	64	3.5	62	78	7	235	37	11	13	37	1.81
15101096--15101141	16	2.8	17	75	21	53	30	4	2	63	1.26
15108075--15108114	16	2.5	15	88	11	62	10	2	5	82	0.91
15108413--15108572	80	2.0	79	85	3	214	28	6	5	58	1.47
15108529--15108562	16	2.1	17	94	5	61	8	5	11	73	1.24
15110034--15110070	14	2.6	15	79	16	51	18	5	8	67	1.36
15110225--15110267	12	3.4	12	87	6	50	23	2	0	74	0.93
15110418--15110463	22	2.0	22	88	12	67	19	6	0	73	1.04
15110428--15110461	18	1.9	18	88	5	52	14	5	0	79	0.91
15110417--15110467	23	2.2	24	83	16	72	21	5	0	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15110625--15110662	20	2.1	19	85	14	53	36	2	2	57	1.26
15111213--15111243	16	1.9	16	93	0	53	3	0	16	80	0.83
15111842--15112283	81	5.5	81	81	3	410	42	17	14	26	1.87
15111884--15112283	121	3.3	119	78	6	378	42	17	13	26	1.86
15111835--15112283	40	11.1	40	79	2	378	42	16	13	26	1.86
15112407--15112567	40	4.2	40	75	10	129	40	13	13	32	1.83
15124521--15124573	14	3.9	13	79	18	63	16	1	5	75	1.08
15127517--15127550	15	2.3	15	89	0	50	67	0	5	26	1.13
15127714--15127738	12	2.1	12	100	0	50	36	0	8	56	1.29
15130025--15130056	3	10.7	3	93	0	55	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100