genome.fa.s168.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  49  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8972196--8972269	9	8.7	9	74	15	59	75	0	2	21	0.92
8972182--8972225	17	2.5	17	81	3	52	77	4	2	15	1.04
8973225--8973281	25	2.3	25	87	3	80	49	0	1	49	1.11
8973426--8973456	15	2.0	16	93	6	55	61	0	0	38	0.96
8973517--8973839	160	2.0	161	98	0	621	44	8	5	42	1.56
8974923--8974963	22	2.0	20	85	9	55	43	2	0	53	1.13
8977068--8977115	2	25.0	2	87	8	73	50	2	0	47	1.12
8980441--8980476	18	2.0	18	88	0	54	22	2	19	55	1.56
8983816--8983865	17	3.0	16	77	8	55	40	6	2	52	1.38
8984631--8984689	21	3.2	17	75	22	57	57	0	1	40	1.09
8984759--8984796	2	19.0	2	88	0	58	50	5	0	44	1.24
8984746--8984796	24	2.1	24	96	0	93	47	7	1	43	1.43
8984951--8984982	16	2.0	16	93	0	55	9	0	3	87	0.64
8985279--8985312	2	17.0	2	93	0	59	50	2	0	47	1.16
8990064--8990119	30	1.9	30	85	10	80	35	0	28	35	1.58
8990070--8990137	30	2.3	30	82	10	77	41	4	23	30	1.74
8992526--8992569	16	2.5	19	82	10	58	70	2	0	27	0.99
8992526--8992572	17	2.7	18	77	12	53	70	2	0	27	0.99
8996514--8996552	12	3.4	12	82	13	55	53	0	0	46	1.00
8997304--8997365	27	2.4	28	86	10	87	51	0	0	48	1.00
9007948--9007981	16	2.1	16	88	0	50	2	17	0	79	0.86
9007996--9008021	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9008549--9008591	19	2.2	20	80	12	54	44	0	0	55	0.99
9010852--9010923	34	2.1	34	92	7	121	47	34	1	16	1.56
9024142--9024187	21	2.2	21	88	7	67	41	0	0	58	0.98
9024142--9024187	20	2.3	21	81	11	60	41	0	0	58	0.98
9026468--9026538	33	2.2	33	94	5	126	47	33	1	16	1.56
9033219--9033246	14	2.0	14	100	0	56	57	0	0	42	0.99
9039880--9039915	17	2.2	16	90	5	54	27	0	0	72	0.85
9040246--9040354	30	3.5	30	76	14	112	69	2	0	26	1.08
9040240--9040357	33	3.6	32	78	11	132	68	2	0	27	1.08
9040309--9040366	11	5.4	11	76	17	59	77	1	1	18	0.94
9041694--9041730	18	2.1	18	94	0	65	45	0	0	54	1.00
9041747--9041823	36	2.0	40	82	9	99	48	7	3	40	1.51
9044184--9044235	26	2.0	26	100	0	104	50	3	15	30	1.62
9045421--9045451	15	2.1	15	93	0	53	58	0	41	0	0.98
9049133--9049166	16	2.1	16	100	0	68	47	0	0	52	1.00
9049163--9049214	16	3.4	16	84	5	63	61	0	0	38	0.96
9049193--9049227	12	3.0	12	91	4	54	65	0	0	34	0.93
9049163--9049229	28	2.4	29	76	14	70	62	0	0	37	0.95
9050666--9050710	23	2.0	23	83	12	58	33	0	2	64	1.06
9051136--9051176	21	2.0	21	85	9	57	21	4	29	43	1.73
9051266--9051314	14	3.4	14	83	5	62	18	2	34	44	1.61
9051265--9051307	15	3.0	14	83	6	59	16	2	37	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9051273--9051390	16	7.7	15	68	22	50	22	1	33	42	1.63
9051323--9051395	16	4.5	16	80	1	83	19	1	34	45	1.59
9052491--9052534	22	2.0	21	82	4	52	2	4	11	81	0.92
9052812--9052861	21	2.6	19	79	14	57	30	0	2	68	1.01
9053043--9053675	110	5.8	110	79	4	503	39	17	19	23	1.92
9053121--9053675	220	2.5	217	77	7	573	38	18	19	23	1.93
9054304--9054383	41	2.0	41	82	5	99	37	18	16	27	1.92
9055288--9055313	9	2.9	9	100	0	52	0	7	0	92	0.39
9062281--9062366	30	2.9	29	77	10	93	29	1	20	48	1.57
9062373--9062436	15	4.4	15	88	3	78	17	3	35	43	1.65
9062372--9062426	15	3.7	15	90	2	85	14	3	40	41	1.63
9062449--9062564	16	7.2	16	74	7	101	18	1	30	50	1.57
9062442--9062567	48	2.6	48	80	3	155	20	1	29	48	1.59
9062472--9062540	17	4.2	17	75	12	63	20	2	27	49	1.63
9063027--9063052	10	2.6	10	100	0	52	76	7	0	15	0.99
9063695--9063738	1	44.0	1	81	0	52	2	0	6	90	0.51
9064047--9064103	3	19.0	3	82	7	62	35	0	0	64	0.93
9066145--9066192	26	2.0	23	84	12	60	54	4	2	39	1.32
9066411--9066644	117	2.0	116	94	0	405	28	11	5	53	1.60
9066916--9066954	13	2.8	13	84	7	51	20	15	0	64	1.30
9067025--9067054	16	1.9	16	93	6	53	3	6	3	86	0.77
9067754--9067824	35	2.0	35	100	0	142	49	16	2	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9069964--9070003	8	5.4	8	80	17	50	35	2	0	62	1.09
9069961--9069990	14	2.1	14	100	0	60	43	0	0	56	0.99
9069968--9070011	14	3.1	14	83	6	52	29	4	0	65	1.12
9070168--9070235	33	2.3	26	71	28	73	61	7	2	27	1.37
9076460--9076504	23	2.0	23	95	0	81	8	0	8	82	0.85
9077872--9077928	21	2.7	21	66	0	60	57	3	5	33	1.38
9077995--9078058	27	2.4	26	81	5	74	54	0	0	45	0.99
9085102--9085137	15	2.4	15	90	0	54	22	0	11	66	1.22
9085703--9085769	33	2.0	33	82	5	82	23	2	13	59	1.48
9086914--9087174	131	2.0	131	95	0	468	40	6	16	37	1.73
9096738--9096844	56	1.9	56	96	0	196	28	26	23	22	1.99
9105602--9105641	21	2.0	21	85	5	55	52	5	0	42	1.23
9106945--9107011	32	2.0	31	83	13	80	52	5	0	41	1.26
9110686--9110719	17	2.1	16	88	5	50	23	2	11	61	1.43
9123492--9124159	244	2.7	238	79	7	672	39	12	8	39	1.74
9124859--9125155	165	1.8	162	80	3	362	40	9	5	45	1.59
9129010--9129080	15	4.6	15	77	6	79	54	2	0	42	1.14
9129010--9129100	47	1.9	47	82	8	114	54	2	2	40	1.24
9129166--9129206	16	2.7	15	85	7	55	48	2	0	48	1.14
9129176--9129238	26	2.5	26	75	14	69	47	4	0	47	1.23
9130435--9130564	17	7.4	17	71	24	67	26	4	0	67	1.15
9130464--9130564	30	3.3	30	76	14	100	24	4	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9130885--9130918	18	1.9	17	94	5	59	26	11	20	41	1.87
9131303--9131327	13	1.9	13	100	0	50	80	0	0	20	0.72
9131364--9131416	25	2.1	25	82	6	63	43	3	7	45	1.50
9135211--9135240	3	10.0	3	100	0	60	33	0	0	66	0.92
9135938--9135993	16	3.3	16	72	27	53	60	1	1	35	1.17
9172948--9173007	12	4.8	13	76	15	56	65	0	0	35	0.93
9172951--9172989	16	2.4	16	82	0	51	64	0	0	35	0.94
9172947--9173008	22	2.8	22	73	7	63	64	0	0	35	0.94
9173835--9173895	26	2.4	24	80	17	70	55	1	0	42	1.09
9174206--9174231	7	3.7	7	100	0	52	57	0	0	42	0.98
9174681--9174770	27	3.5	25	74	17	76	51	1	0	47	1.08
9174702--9174787	24	3.4	25	73	19	63	52	1	0	46	1.08
9174748--9174794	25	2.0	25	83	8	62	51	0	0	48	1.00
9178254--9178288	11	3.2	11	83	0	52	45	0	0	54	0.99
9178561--9178609	24	2.0	24	100	0	98	36	16	8	38	1.78
9180467--9180512	24	1.9	24	82	8	58	39	0	0	60	0.97
9180549--9180602	17	3.2	16	76	19	56	44	3	1	50	1.30
9184203--9184265	24	2.6	25	92	5	101	23	0	23	52	1.47
9184213--9184254	14	3.3	14	75	25	56	26	0	23	50	1.50
9185624--9185780	52	3.0	52	85	3	183	40	8	25	25	1.84
9186265--9186349	31	2.7	31	94	0	143	28	22	24	24	1.99
9186343--9186394	25	2.1	24	82	10	61	40	5	32	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9186357--9186424	35	1.9	36	87	3	102	42	4	30	22	1.73
9186402--9186454	25	2.1	25	86	13	74	33	7	37	20	1.81
9186750--9186893	52	2.8	52	89	2	209	41	9	24	25	1.84
9187391--9187460	31	2.3	31	89	0	113	31	24	20	24	1.98
9193041--9193129	47	1.9	44	82	13	108	42	2	1	53	1.20
9193087--9193179	24	4.4	20	72	20	66	41	2	2	53	1.25
9193306--9193398	36	2.5	36	78	16	102	23	3	5	67	1.26
9193610--9193643	15	2.2	16	89	5	52	76	5	5	11	1.14
9193932--9193996	25	2.5	26	71	11	62	50	7	6	35	1.56
9199459--9199496	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100