genome.fa.s168.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  47  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8624158--8624215	17	3.8	16	73	15	50	77	0	17	5	0.94
8625308--8625368	22	2.8	22	77	5	61	40	8	18	32	1.80
8625553--8625634	43	1.9	42	85	7	112	37	12	14	35	1.84
8625927--8626508	41	14.1	41	85	4	649	24	15	21	38	1.92
8626567--8626703	43	3.2	43	82	3	161	23	13	24	39	1.90
8626880--8626931	9	5.3	9	76	15	50	15	1	3	78	0.98
8627029--8627069	19	2.2	19	87	12	59	29	0	2	68	1.03
8627085--8627149	22	3.0	21	76	19	71	23	4	3	69	1.21
8627085--8627148	21	3.0	21	71	15	60	23	4	3	68	1.23
8627041--8627186	22	6.7	20	66	20	55	25	4	2	67	1.21
8627124--8627191	28	2.4	27	80	4	82	22	7	0	70	1.11
8627122--8627203	24	3.3	23	74	16	65	19	7	1	71	1.16
8627736--8627779	21	2.0	22	86	4	63	54	0	45	0	0.99
8628019--8628142	10	11.3	10	73	19	79	15	0	4	79	0.95
8628019--8628086	23	3.1	23	81	10	63	11	1	2	83	0.82
8628068--8628147	4	19.8	4	74	15	51	20	1	5	73	1.08
8628024--8628148	15	8.6	15	67	25	63	16	1	4	77	1.01
8628168--8628389	59	3.7	59	81	9	245	45	5	9	38	1.60
8628177--8628331	62	2.5	62	82	11	187	42	4	10	42	1.59
8629261--8629288	2	14.0	2	100	0	56	50	0	0	50	1.00
8631504--8631555	10	5.1	10	76	21	54	36	1	7	53	1.41
8631503--8631559	13	4.1	14	79	18	66	35	1	8	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8631720--8631760	18	2.3	18	95	0	73	36	4	4	53	1.44
8633035--8633084	10	5.7	9	73	21	52	46	0	0	54	1.00
8635452--8635586	69	2.0	69	97	1	254	43	13	2	40	1.56
8635655--8635728	30	2.5	31	86	6	107	40	4	21	33	1.72
8636099--8636125	12	2.2	12	100	0	54	59	7	0	33	1.25
8636868--8636911	21	2.0	22	91	4	72	72	6	4	15	1.22
8637241--8637283	10	4.1	10	82	11	50	67	9	2	20	1.30
8637241--8637283	22	2.0	22	86	8	63	67	9	2	20	1.30
8637240--8637291	20	2.7	19	75	19	54	71	9	1	17	1.22
8637664--8637726	26	2.4	25	79	7	72	66	9	14	9	1.44
8638401--8638470	15	4.4	16	75	10	63	72	4	0	22	1.01
8638460--8638882	207	2.0	205	80	9	475	43	7	12	36	1.70
8641215--8641401	26	7.0	26	71	16	107	30	4	1	64	1.20
8641207--8641325	31	4.0	31	76	17	110	31	5	0	62	1.23
8641217--8641319	53	2.0	53	88	1	154	32	4	0	63	1.16
8641221--8641369	52	2.9	51	76	7	124	30	4	0	64	1.17
8641210--8641340	31	4.5	31	75	17	93	30	3	0	64	1.16
8641334--8641381	20	2.5	20	82	3	53	25	2	0	72	0.95
8641304--8641403	50	2.0	50	82	7	123	28	4	2	66	1.21
8641402--8641444	3	13.7	3	85	9	59	30	2	2	65	1.18
8641239--8641446	102	2.0	101	78	14	214	29	4	1	64	1.21
8641270--8641439	81	2.2	76	82	11	197	30	4	1	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8641706--8641750	20	2.1	21	84	15	58	22	0	17	60	1.37
8642304--8642342	5	7.6	5	94	5	69	17	0	0	82	0.68
8642304--8642343	21	1.9	21	100	0	80	17	0	0	82	0.67
8642374--8642582	116	1.8	114	85	8	298	43	5	12	38	1.66
8642374--8642582	58	3.6	57	82	7	235	43	5	12	38	1.66
8644962--8645023	29	2.1	29	85	5	81	25	9	6	58	1.54
8648843--8648874	16	2.0	16	100	0	64	43	0	0	56	0.99
8654872--8654929	30	1.9	30	86	6	82	43	3	18	34	1.68
8656437--8656472	16	2.1	18	90	10	58	61	11	5	22	1.50
8658252--8658301	14	3.4	14	81	10	55	54	6	2	38	1.37
8660138--8660183	18	2.4	19	82	10	58	78	0	0	21	0.76
8660155--8660185	15	2.0	15	93	6	53	77	0	0	22	0.77
8660154--8660187	16	2.1	17	88	5	52	76	0	0	23	0.79
8661146--8661190	21	2.1	21	84	8	56	13	4	4	77	1.07
8661163--8661217	20	2.7	20	77	8	58	18	0	9	72	1.10
8661206--8661257	16	3.4	14	75	15	50	19	3	1	75	1.06
8661206--8661257	23	2.3	23	93	0	86	19	3	1	75	1.06
8675202--8675240	21	1.9	20	84	5	51	46	17	0	35	1.49
8678174--8678205	15	2.1	15	94	0	55	25	0	3	71	1.00
8678174--8678343	4	43.8	4	65	14	61	27	4	4	64	1.30
8679153--8679214	23	2.5	26	75	19	78	27	0	4	67	1.10
8679167--8679214	19	2.5	20	83	9	57	29	0	4	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8679219--8679296	6	12.7	6	74	15	61	16	6	0	76	0.98
8679220--8679301	5	15.8	5	82	11	62	15	7	0	76	0.99
8679221--8679273	27	1.9	28	88	3	81	15	9	0	75	1.04
8679222--8679286	33	2.0	33	84	6	87	16	7	0	75	1.03
8679298--8679719	60	7.1	57	74	11	341	43	7	11	37	1.69
8690115--8690161	16	3.1	15	84	12	60	76	0	12	10	1.02
8690100--8690154	27	2.0	28	86	6	78	76	0	14	9	1.02
8691150--8691489	43	7.9	43	84	5	422	25	15	19	39	1.91
8691150--8691489	85	4.0	85	87	6	429	25	15	19	39	1.91
8691145--8691489	128	2.7	126	85	6	428	24	15	20	39	1.92
8691687--8691721	18	1.9	18	100	0	70	25	0	0	74	0.82
8691687--8691722	7	5.6	7	81	18	51	25	0	0	75	0.81
8691733--8691764	15	2.1	15	94	0	55	25	0	3	71	1.00
8691699--8691838	29	5.0	26	69	25	74	25	4	3	66	1.26
8692737--8692816	6	12.7	6	78	10	79	13	5	1	80	0.95
8692745--8692817	27	2.8	28	83	8	82	13	6	1	78	1.02
8692737--8692815	22	3.7	21	77	14	74	13	5	1	79	0.95
8692737--8692816	33	2.5	30	81	18	99	13	5	1	80	0.95
8692737--8692819	45	2.0	43	81	13	102	13	6	1	79	0.97
8692841--8693177	121	2.8	120	86	4	459	44	7	10	36	1.68
8692821--8693175	58	5.9	59	74	15	244	46	7	10	36	1.65
8694036--8694091	27	2.1	27	86	6	78	41	1	5	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8694588--8694632	2	23.0	2	95	4	83	51	0	0	48	1.00
8694859--8694970	11	10.1	11	68	4	55	50	5	2	41	1.39
8694860--8694927	35	1.9	35	93	0	118	55	5	1	36	1.33
8694873--8694927	19	3.1	19	68	24	55	52	5	1	40	1.35
8694977--8695027	22	2.3	22	86	6	68	50	0	5	43	1.26
8694989--8695037	22	2.2	23	82	10	66	55	0	4	40	1.19
8695068--8695108	22	1.9	21	85	14	57	46	9	4	39	1.58
8695395--8695589	22	8.8	22	68	15	107	49	7	6	36	1.57
8695879--8696174	22	13.2	22	69	10	125	47	4	9	39	1.54
8696138--8696232	43	2.2	44	83	9	115	43	3	11	42	1.57
8696130--8696210	22	3.7	22	73	15	69	45	3	9	40	1.55
8696245--8696357	22	5.1	22	73	12	88	48	7	11	31	1.68
8696339--8696398	22	2.7	22	76	0	66	50	10	5	35	1.58
8696421--8696554	22	6.2	22	73	10	89	47	6	5	40	1.54
8696513--8696562	22	2.5	20	80	9	57	46	6	6	42	1.53
8696406--8696610	108	1.9	108	79	6	227	44	6	8	40	1.60
8696607--8696667	11	5.5	11	72	0	50	49	8	6	36	1.59
8697064--8697103	21	1.9	21	89	0	62	47	7	5	40	1.54
8697105--8697255	80	1.9	81	86	4	216	46	9	5	38	1.60
8702111--8702146	2	18.0	2	100	0	72	0	50	0	50	1.00
8703840--8703902	32	1.9	34	87	6	94	17	11	0	71	1.14
8707035--8707100	27	2.3	28	80	12	73	37	3	6	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8709171--8709210	19	1.9	19	85	14	53	57	0	2	40	1.12
8718869--8718901	16	2.1	16	88	11	50	3	15	0	81	0.80
8718872--8718901	15	2.1	15	93	6	53	3	13	0	83	0.77
8721289--8721315	2	13.5	2	100	0	54	48	0	0	51	1.00
8732270--8732343	14	5.3	13	72	16	60	75	4	1	18	1.03
8732264--8732325	24	2.6	23	80	12	63	74	4	1	19	1.09
8733109--8733258	3	55.3	3	68	21	91	63	4	0	31	1.20
8733165--8733258	26	3.7	26	76	16	90	60	3	1	35	1.20
8733109--8733258	63	2.4	62	82	8	191	63	4	0	31	1.20
8733109--8733256	34	4.5	32	75	18	117	63	4	0	31	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100