genome.fa.s168.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  71  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12633092--12633135	14	3.1	14	83	3	52	27	2	0	70	0.99
12633766--12633815	24	2.1	23	81	3	55	60	0	4	36	1.16
12635705--12635759	26	2.2	24	80	9	56	52	1	0	45	1.11
12636478--12636623	60	2.5	59	80	5	161	39	13	8	39	1.75
12636478--12636647	58	2.9	56	77	13	155	39	12	8	39	1.74
12636721--12636772	10	5.3	9	76	15	50	80	7	0	11	0.89
12636701--12636774	23	3.2	22	79	7	60	78	9	0	12	0.97
12641031--12641083	9	5.3	9	77	18	52	79	0	9	11	0.94
12641060--12641136	17	4.9	15	73	19	59	80	0	12	6	0.89
12641031--12641139	32	3.3	32	78	15	89	77	0	13	8	0.97
12641061--12641137	9	8.4	9	72	12	50	81	0	11	6	0.85
12641061--12641139	35	2.2	36	80	8	92	81	0	12	6	0.88
12641266--12641308	23	2.0	21	81	9	50	46	6	16	30	1.73
12641829--12642013	63	2.9	63	95	0	316	37	8	23	30	1.85
12642414--12642466	21	2.5	21	84	6	72	43	7	11	37	1.69
12643060--12643282	43	5.3	41	77	7	139	25	12	18	43	1.84
12643170--12643462	43	6.9	43	82	5	326	23	12	18	44	1.84
12643192--12643462	83	3.2	84	83	4	337	24	12	18	44	1.85
12643088--12643440	126	2.8	127	82	4	390	24	13	19	43	1.87
12656832--12656874	21	2.0	22	90	4	70	41	18	16	23	1.89
12659630--12659661	14	2.3	14	94	0	55	50	0	3	46	1.17
12659788--12659896	31	3.5	31	72	16	91	39	5	4	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12659885--12659925	14	2.7	15	82	17	50	43	4	0	51	1.23
12659885--12659925	15	2.7	16	85	11	59	43	4	0	51	1.23
12660590--12660626	17	2.2	17	90	4	58	32	0	0	67	0.91
12662590--12662746	52	3.0	52	85	1	208	39	8	24	27	1.84
12667247--12667290	17	2.7	16	80	13	54	18	2	27	52	1.57
12668306--12668347	17	2.5	16	85	11	57	2	28	0	69	1.01
12668440--12668486	22	2.1	22	84	7	60	4	23	2	70	1.16
12679655--12679689	18	1.9	18	88	0	52	37	0	8	54	1.31
12683954--12683980	4	6.8	4	100	0	54	22	0	0	77	0.76
12684341--12684424	3	28.3	3	95	2	152	66	0	1	32	0.99
12684525--12684563	14	2.9	14	92	3	62	56	5	0	38	1.22
12684760--12685370	16	39.2	16	68	16	173	46	30	1	20	1.62
12684809--12685386	8	73.2	8	65	15	107	47	30	1	20	1.61
12684768--12684918	33	4.7	32	74	14	123	43	33	2	21	1.66
12684994--12685066	25	3.0	25	92	6	114	42	30	2	24	1.69
12685038--12685207	30	5.4	30	71	18	89	47	30	1	20	1.58
12685090--12685152	33	1.9	33	87	6	92	52	23	1	22	1.56
12685089--12685386	30	9.5	31	69	15	121	48	30	0	20	1.54
12685315--12685374	22	2.7	22	84	2	66	55	26	0	18	1.43
12685308--12685372	14	4.3	15	77	13	53	55	27	0	16	1.42
12685375--12685433	21	2.6	23	76	10	59	45	25	6	22	1.76
12685428--12685476	15	3.2	16	80	11	66	53	18	2	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12685425--12685493	30	2.3	30	85	7	95	47	20	2	28	1.64
12686047--12686492	57	7.7	57	89	7	663	34	13	7	44	1.73
12686047--12686494	116	3.9	116	93	2	724	34	13	7	44	1.73
12686280--12686368	27	3.2	27	63	20	65	38	13	5	42	1.68
12686574--12686634	7	8.4	7	78	21	56	83	4	0	11	0.79
12686574--12686619	16	3.2	15	82	17	62	80	6	0	13	0.89
12686942--12686984	19	2.3	18	84	7	59	25	20	30	23	1.99
12687118--12687165	25	1.9	25	83	8	62	43	18	6	31	1.75
12687919--12688006	1	88.0	1	79	0	95	0	0	10	89	0.48
12687919--12688007	8	11.8	8	90	9	127	0	0	11	88	0.51
12687919--12688005	46	1.9	46	92	2	149	0	0	10	89	0.48
12688015--12688507	41	11.9	42	89	5	722	37	22	17	22	1.94
12688015--12688507	165	3.0	164	88	5	760	37	22	17	22	1.94
12689537--12689665	8	15.8	8	84	13	174	10	13	0	75	1.05
12692334--12692394	30	2.0	31	83	3	79	67	8	6	18	1.38
12692745--12692813	1	69.0	1	79	0	75	0	0	10	89	0.47
12692750--12692814	17	3.9	16	86	11	85	0	0	10	89	0.49
12692745--12692814	35	2.0	34	91	5	113	0	0	11	88	0.51
12692822--12693269	41	10.9	41	91	4	703	36	23	18	21	1.95
12692822--12693269	206	2.2	203	92	4	749	36	23	18	21	1.95
12694301--12694380	6	13.2	6	73	21	53	12	15	0	72	1.12
12694309--12694400	8	11.9	8	80	17	90	11	15	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12694293--12694399	55	2.0	54	85	9	146	11	15	0	72	1.11
12694294--12694400	15	7.0	15	76	21	98	12	15	0	71	1.13
12694309--12694390	9	9.3	9	82	16	77	12	14	0	73	1.11
12701617--12701648	15	2.1	16	94	5	57	50	6	25	18	1.70
12704827--12705402	59	9.7	59	87	7	796	34	13	7	44	1.72
12705189--12705277	27	3.2	27	63	20	65	38	13	5	42	1.68
12704827--12705403	116	4.9	115	90	5	859	33	13	7	45	1.72
12705483--12705529	12	3.7	13	78	13	53	80	4	2	12	0.94
12705483--12705539	13	4.5	12	82	8	60	78	3	5	12	1.03
12712779--12712840	32	1.9	32	83	0	79	30	16	20	32	1.95
12713135--12713340	33	6.4	33	72	12	124	36	22	12	28	1.91
12713397--12713454	28	2.1	28	83	0	71	32	22	10	34	1.88
12713137--12713495	162	2.2	161	82	6	447	35	21	13	29	1.92
12713852--12713915	14	4.8	13	77	7	51	82	14	1	1	0.81
12715907--12715980	20	3.8	20	75	12	64	54	9	0	36	1.33
12716159--12716235	30	2.5	31	72	8	77	57	2	3	36	1.31
12716418--12716478	29	2.1	28	84	3	77	24	0	11	63	1.27
12716391--12716562	83	2.1	82	84	6	231	27	4	7	60	1.42
12716579--12716617	20	2.0	20	85	10	53	41	0	10	48	1.37
12716587--12716620	10	3.3	10	87	4	50	38	0	11	50	1.39
12717118--12717149	16	1.9	17	93	6	57	53	0	3	43	1.16
12723295--12723333	20	2.0	20	85	5	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12732008--12733248	161	7.9	158	73	10	749	33	9	14	42	1.78
12732008--12732829	318	2.6	315	77	7	811	33	10	15	40	1.81
12733139--12733176	20	1.9	20	89	10	60	34	0	5	60	1.19
12734328--12734367	20	2.0	20	90	9	64	25	30	25	20	1.99
12734437--12734485	16	2.7	19	78	15	59	32	0	6	61	1.21
12734446--12734627	65	2.8	64	79	15	153	27	2	4	65	1.25
12734442--12734573	63	2.2	60	76	19	134	27	1	4	66	1.20
12735474--12735609	7	18.6	7	69	18	57	16	1	5	76	1.04
12735507--12735555	20	2.5	19	84	12	64	12	2	4	81	0.91
12735504--12735558	12	4.7	12	82	8	53	12	1	3	81	0.89
12735507--12735571	32	2.0	32	85	5	87	16	1	6	75	1.08
12735503--12735604	11	8.5	11	73	23	57	18	1	4	74	1.09
12735624--12736223	60	9.9	57	82	7	599	45	8	12	33	1.72
12735636--12736223	59	9.7	59	84	9	685	45	8	12	33	1.72
12736013--12736223	119	1.8	116	92	1	334	40	9	15	35	1.78
12737001--12737049	21	2.3	22	80	16	59	2	30	2	65	1.15
12737447--12737484	15	2.7	14	84	11	51	10	7	0	81	0.87
12737448--12737494	24	2.0	24	86	0	67	10	6	0	82	0.82
12737671--12737724	17	3.0	17	72	15	54	38	18	5	37	1.74
12741988--12742021	18	1.9	17	88	5	50	44	0	14	41	1.45
12742664--12742743	31	2.5	31	81	4	88	40	0	10	50	1.36
12753021--12753055	5	7.0	5	86	0	52	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12753018--12753055	15	2.5	15	100	0	76	0	34	0	65	0.93
12761967--12762006	16	2.5	16	88	8	55	15	5	0	80	0.88
12764188--12764221	15	2.2	16	89	5	52	38	0	0	61	0.96
12767037--12767176	52	2.7	52	78	4	156	32	18	4	45	1.69
12767197--12767232	11	3.3	11	84	0	54	44	25	0	30	1.54
12770744--12770789	16	2.9	16	96	0	83	23	0	30	45	1.53
12770821--12770998	16	11.2	16	71	12	109	19	0	33	47	1.50
12770881--12770933	17	3.2	17	84	10	74	13	0	35	50	1.41
12770877--12770994	32	3.6	33	84	11	147	18	0	35	45	1.50
12772373--12772408	14	2.6	14	91	4	56	8	0	8	83	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100