genome.fa.s168.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  74  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13221753--13221917	34	4.9	34	76	1	125	33	15	12	38	1.85
13225784--13226142	161	2.2	160	80	3	391	33	8	12	45	1.73
13230244--13230349	6	17.8	6	75	5	81	22	2	6	67	1.27
13230245--13230349	30	3.3	29	74	17	93	21	2	6	68	1.26
13230616--13231077	134	3.4	134	82	2	523	28	13	19	38	1.90
13230914--13230988	33	2.3	33	83	0	96	32	13	21	33	1.92
13232990--13233034	18	2.5	19	92	7	76	62	6	4	26	1.39
13239759--13240003	79	3.1	80	80	2	244	22	8	25	42	1.82
13243478--13244235	303	2.5	305	89	0	1126	36	15	13	33	1.87
13246122--13246156	16	2.2	16	89	0	52	34	5	11	48	1.63
13246139--13246242	20	5.6	20	71	15	80	27	5	13	52	1.63
13251566--13251799	73	3.3	71	82	4	242	41	6	11	40	1.68
13251566--13251800	70	3.3	71	78	7	219	41	6	11	40	1.67
13253534--13253586	24	2.2	24	93	0	88	26	22	9	41	1.84
13253747--13253771	2	12.5	2	100	0	50	52	0	0	48	1.00
13253793--13253829	17	2.2	16	90	4	56	32	2	0	64	1.07
13258856--13258890	8	4.4	8	96	0	61	40	0	60	0	0.97
13259642--13259793	71	2.1	72	80	6	166	40	4	2	51	1.36
13259705--13259781	23	3.2	24	67	18	63	37	2	2	57	1.27
13260244--13260312	16	4.2	16	77	18	54	10	2	5	81	0.97
13260268--13260347	6	12.8	6	76	17	67	18	2	2	76	1.02
13262872--13262904	17	1.9	17	88	11	50	3	36	0	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13275168--13275201	3	11.3	3	100	0	68	32	0	0	67	0.91
13275200--13275258	3	19.7	3	92	0	100	32	30	0	37	1.58
13276644--13278367	888	1.9	874	82	7	2097	51	11	9	27	1.68
13279393--13279491	48	2.1	48	88	0	144	30	13	12	44	1.80
13279884--13279921	16	2.3	16	86	13	51	44	0	0	55	0.99
13280496--13280554	30	1.9	31	82	3	75	57	3	5	33	1.37
13280617--13280656	21	2.0	20	85	14	55	55	5	2	37	1.35
13280650--13280710	32	1.9	32	87	9	90	52	1	0	45	1.10
13280656--13280721	32	2.1	32	82	5	80	53	1	1	43	1.19
13280738--13280784	23	2.1	22	84	4	58	57	2	4	36	1.30
13282105--13282138	17	1.9	18	88	5	52	58	5	32	2	1.37
13282491--13282547	19	3.1	18	78	9	69	57	1	7	33	1.36
13283232--13283257	2	13.0	2	100	0	52	50	0	0	50	1.00
13286243--13286281	21	1.9	21	94	5	71	33	17	5	43	1.72
13288199--13288485	63	4.4	62	72	16	206	42	10	7	39	1.67
13288008--13288505	196	2.5	194	82	6	544	42	9	8	38	1.69
13293917--13293956	15	2.5	16	88	8	55	2	12	0	85	0.71
13294917--13295005	18	5.0	18	67	24	55	57	11	2	29	1.46
13301765--13301968	112	1.8	113	81	5	261	48	12	11	27	1.75
13318053--13318093	20	2.0	20	100	0	82	9	36	19	34	1.85
13325443--13325500	25	2.3	26	91	8	93	55	1	0	43	1.10
13326790--13326839	21	2.4	21	79	0	55	40	2	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326989--13327017	2	14.5	2	100	0	58	0	48	0	51	1.00
13327017--13327053	2	18.5	2	100	0	74	48	0	0	51	1.00
13329764--13329813	26	2.0	25	84	11	66	42	4	4	50	1.40
13340694--13340728	16	2.2	16	89	0	52	68	22	0	8	1.16
13348211--13348251	9	4.8	9	76	11	50	78	0	2	19	0.87
13348644--13348761	20	5.8	20	76	11	107	48	27	5	18	1.69
13349092--13349132	3	13.7	3	100	0	82	68	0	0	31	0.90
13349548--13349742	60	3.2	60	82	0	246	41	12	24	22	1.88
13360441--13360483	20	2.2	20	87	8	61	48	9	11	30	1.71
13360985--13361013	14	2.0	15	93	6	51	6	10	0	82	0.83
13361022--13361051	4	7.5	4	92	0	51	53	0	0	46	1.00
13361241--13361915	40	16.9	40	75	10	436	40	16	16	27	1.89
13362005--13362161	74	2.1	73	81	5	181	42	13	14	30	1.83
13362083--13362154	34	2.1	34	92	0	117	38	16	15	29	1.89
13362061--13362159	34	2.6	40	70	18	102	43	13	14	29	1.83
13365310--13366042	364	2.0	364	90	0	1162	28	17	14	38	1.90
13373978--13374074	50	1.9	52	83	6	128	39	15	8	37	1.77
13374126--13374150	4	6.2	4	100	0	50	48	0	0	52	1.00
13377776--13377818	5	9.2	5	97	2	65	79	0	0	20	0.74
13377846--13377887	19	2.2	19	87	8	59	83	2	7	7	0.89
13378235--13378335	20	5.0	20	75	5	78	52	28	2	15	1.58
13378627--13378655	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13378946--13379092	78	1.9	79	84	4	199	34	13	15	36	1.87
13379185--13379223	21	1.9	21	89	5	62	66	2	5	25	1.25
13380394--13380423	15	2.0	15	93	0	51	80	0	3	16	0.85
13381099--13381149	21	2.4	22	90	3	77	45	11	1	41	1.52
13381305--13381348	16	2.8	16	83	10	54	54	2	0	43	1.12
13381411--13381454	22	1.9	24	86	9	65	52	0	0	47	1.00
13382372--13382418	2	23.5	2	95	0	85	0	48	2	48	1.13
13386879--13387008	70	1.9	70	87	4	192	43	4	12	40	1.63
13387704--13387764	18	3.4	18	76	13	63	37	18	4	39	1.72
13387696--13387764	35	2.0	35	91	0	111	37	20	4	37	1.72
13387696--13387747	17	3.0	17	76	15	61	38	21	3	36	1.72
13402347--13402546	63	3.2	63	68	17	180	36	12	13	38	1.82
13402272--13402554	125	2.3	123	87	4	394	34	12	14	39	1.83
13402123--13402608	125	3.9	123	68	14	327	34	13	12	39	1.82
13403173--13403239	25	2.7	25	78	0	71	19	7	28	44	1.77
13407670--13407715	21	2.2	21	96	0	83	34	0	13	52	1.40
13413716--13413965	135	1.9	135	85	1	349	40	18	11	30	1.85
13413917--13413995	33	2.4	33	80	4	88	35	21	11	31	1.89
13413782--13414143	167	2.2	168	84	1	458	39	19	11	29	1.87
13413924--13414210	134	2.1	134	79	5	303	38	19	14	28	1.90
13416424--13416473	20	2.4	21	86	3	66	54	0	2	44	1.11
13422614--13422652	16	2.4	16	82	0	51	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13422607--13422655	12	3.8	13	79	20	50	36	0	0	63	0.95
13422621--13422656	18	2.1	17	89	5	54	36	0	0	63	0.94
13439162--13439245	29	2.9	30	80	3	91	54	1	1	42	1.15
13439196--13439244	25	2.0	25	88	8	73	59	2	0	38	1.09
13443656--13443682	2	13.5	2	100	0	54	51	0	48	0	1.00
13445398--13445442	4	11.2	4	95	0	63	26	6	24	42	1.79
13447210--13447273	17	3.8	16	78	14	58	78	6	0	15	0.95
13447236--13447270	16	2.2	16	89	0	52	82	5	0	11	0.82
13447864--13447915	20	2.6	19	82	14	61	80	5	7	5	1.01
13447864--13447916	19	2.8	18	83	11	61	79	5	9	5	1.06
13448311--13448396	29	2.9	29	75	15	68	59	0	1	39	1.05
13449249--13449292	21	2.0	23	82	8	56	36	2	4	56	1.32
13450093--13450141	24	2.0	24	84	7	64	40	2	0	57	1.10
13451286--13451430	62	2.3	63	82	7	170	30	14	14	40	1.86
13451440--13451642	63	3.2	63	78	6	223	32	15	12	39	1.86
13453294--13453374	40	2.0	41	87	2	119	23	30	16	29	1.96
13453768--13453810	16	2.7	16	81	0	59	48	20	0	30	1.50
13453800--13453838	12	3.2	12	89	10	62	53	5	0	41	1.23
13453803--13453849	24	2.0	24	83	8	60	55	6	0	38	1.26
13456437--13456482	18	2.5	18	82	10	58	30	0	0	69	0.89
13456748--13456820	32	2.2	33	79	16	80	39	0	2	57	1.13
13458531--13458578	25	1.9	25	87	8	71	35	2	4	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13460602--13460647	21	2.2	21	85	14	60	65	2	2	30	1.16
13460698--13460736	14	2.8	14	88	0	51	48	0	2	48	1.15
13460751--13460781	11	2.8	11	95	0	53	54	0	0	45	0.99
13460766--13460823	19	3.3	18	71	17	50	48	0	0	51	1.00
13467671--13467708	3	12.7	3	88	0	58	60	5	0	34	1.19
13467801--13467829	3	9.7	3	100	0	58	65	0	0	34	0.93
13470158--13470475	170	1.9	171	90	0	512	30	15	16	36	1.90
13473318--13473376	28	2.1	27	82	14	68	52	1	1	44	1.21
13475217--13475262	22	2.1	22	84	8	58	52	6	0	41	1.27
13477108--13477137	13	2.2	14	94	5	53	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100