genome.fa.s168.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  26  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4797438--4797624	22	8.5	22	80	9	141	45	8	7	37	1.63
4797433--4797617	87	2.1	88	80	8	209	44	9	7	38	1.65
4802130--4802166	2	18.5	2	94	0	65	45	0	2	51	1.15
4824294--4825226	313	3.0	310	97	1	1741	36	16	13	33	1.88
4825920--4825946	14	1.9	14	100	0	54	37	11	14	37	1.82
4827273--4827298	2	13.0	2	100	0	52	50	0	0	50	1.00
4827382--4827434	3	17.7	3	88	0	79	66	3	1	28	1.20
4827529--4827597	21	3.3	21	82	8	86	28	8	17	44	1.78
4827516--4827597	42	2.0	41	83	4	103	30	8	15	45	1.76
4827674--4827728	21	2.5	22	79	5	58	32	5	10	50	1.60
4828154--4828260	22	4.6	22	72	13	81	45	6	0	46	1.35
4828149--4828217	11	6.3	11	75	5	50	43	2	1	52	1.25
4828232--4828275	22	2.0	23	86	4	63	40	9	2	47	1.48
4828176--4828267	47	2.0	47	80	8	107	45	7	1	45	1.39
4830698--4830742	19	2.2	20	88	7	65	40	0	0	60	0.97
4832708--4832772	29	2.2	29	91	0	103	58	13	18	9	1.61
4836158--4836199	18	2.3	19	87	4	59	26	2	2	69	1.13
4837009--4837060	21	2.5	21	81	12	63	36	0	7	55	1.29
4837152--4837247	21	4.6	21	85	2	113	32	2	15	50	1.56
4837191--4837230	11	3.7	11	80	6	55	30	0	15	55	1.41
4837220--4837273	27	2.0	27	92	0	90	38	5	3	51	1.43
4837199--4837369	41	3.8	47	78	12	135	36	8	7	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4837196--4837334	21	6.4	21	78	15	122	38	7	7	47	1.59
4837251--4837401	20	7.2	20	78	14	124	35	9	7	47	1.65
4837247--4837334	41	2.1	41	89	0	140	38	10	5	45	1.62
4837384--4837616	21	11.0	21	69	12	75	36	6	9	47	1.61
4837610--4837660	21	2.4	21	80	0	57	35	1	9	52	1.46
4837732--4837781	21	2.4	22	86	6	68	34	4	8	54	1.49
4838836--4838894	29	2.0	30	83	9	77	47	5	1	45	1.34
4840761--4840790	15	1.9	16	93	6	53	23	0	6	70	1.11
4840846--4840895	21	2.3	21	79	3	55	42	2	0	56	1.11
4840792--4840881	41	2.2	41	76	9	96	47	2	1	48	1.21
4841855--4841913	29	2.0	29	90	0	91	47	16	16	18	1.83
4853023--4853081	29	2.0	29	100	0	118	52	13	23	10	1.71
4853615--4853652	19	2.0	19	100	0	76	47	10	26	15	1.78
4857512--4857720	21	10.0	21	68	10	95	37	3	11	47	1.58
4857657--4857714	11	5.5	11	70	15	50	34	1	15	48	1.55
4857683--4857810	47	2.7	47	77	11	129	35	7	7	48	1.61
4857701--4857828	47	2.7	47	81	10	129	35	8	7	48	1.61
4857735--4857845	20	5.2	20	73	16	87	35	9	7	48	1.62
4857791--4857909	21	5.7	21	74	8	91	31	5	9	53	1.54
4857841--4857975	21	6.3	21	70	14	80	36	4	5	53	1.46
4858054--4858104	21	2.4	21	80	0	57	35	1	9	52	1.46
4858178--4858227	21	2.4	21	86	6	66	32	6	8	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4858231--4858278	25	1.9	25	82	0	60	52	8	2	37	1.44
4858658--4858685	10	2.8	10	100	0	56	39	7	0	53	1.28
4861216--4861290	21	3.2	22	81	12	71	42	0	2	54	1.14
4862246--4862304	29	2.0	29	90	0	91	47	16	16	18	1.83
4864959--4865083	18	6.9	18	72	13	105	27	5	36	31	1.80
4865037--4865079	21	2.0	21	95	0	77	27	2	44	25	1.66
4865413--4865463	27	1.9	26	88	4	75	31	39	5	23	1.79
4868838--4868886	25	1.9	26	91	4	82	40	10	2	46	1.49
4869393--4869471	19	4.2	18	71	19	54	21	59	1	17	1.44
4869338--4869419	20	4.2	20	65	20	55	23	62	0	14	1.32
4869366--4869452	38	2.3	39	86	4	115	21	60	1	16	1.41
4874071--4874120	24	2.1	24	84	0	64	18	36	12	34	1.87
4877808--4877836	5	6.0	5	92	8	51	79	0	0	20	0.74
4882126--4882416	60	4.9	59	88	5	399	46	5	9	39	1.58
4882106--4882416	119	2.6	119	87	4	479	46	5	9	38	1.58
4883828--4883857	3	10.0	3	100	0	60	33	0	0	66	0.92
4883890--4883937	10	4.5	11	87	10	64	35	0	0	64	0.94
4885352--4885408	19	2.8	19	74	10	51	56	0	0	43	0.99
4886173--4886224	17	2.8	18	85	11	61	32	0	9	57	1.31
4886382--4886418	16	2.3	16	90	9	58	81	0	2	16	0.81
4887382--4887412	3	10.3	3	100	0	62	64	0	0	35	0.94
4887455--4887513	26	2.3	26	84	0	73	35	28	16	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888746--4888797	18	2.8	20	80	16	67	23	0	1	75	0.91
4888728--4888800	38	1.9	37	81	13	87	21	1	2	73	1.03
4889169--4889235	31	2.2	31	89	5	100	49	34	1	14	1.53
4889169--4889232	16	4.1	16	78	11	69	51	31	1	15	1.53
4889176--4889240	15	4.2	16	84	11	82	49	30	1	18	1.57
4901850--4901877	10	2.8	10	100	0	56	53	0	7	39	1.28
4902255--4902302	25	1.9	25	82	0	60	37	2	8	52	1.44
4902306--4902355	21	2.4	21	86	6	66	54	8	6	32	1.54
4902473--4902526	21	2.6	21	78	0	54	42	11	9	37	1.73
4902558--4902692	21	6.3	21	68	16	80	53	5	4	36	1.46
4902636--4902710	21	3.6	21	78	5	62	57	6	4	32	1.43
4902677--4902742	21	3.2	20	82	6	69	50	10	7	31	1.65
4902688--4902797	20	5.2	20	73	18	87	48	7	9	35	1.63
4902705--4902835	46	2.8	47	79	8	133	48	7	8	35	1.62
4902812--4903019	21	10.0	21	70	11	104	47	11	3	37	1.58
4902942--4903033	42	2.2	42	80	0	103	50	10	3	35	1.54
4902831--4903019	104	1.8	104	81	4	238	46	12	3	38	1.57
4906880--4906917	19	2.0	19	100	0	76	15	26	10	47	1.78
4907451--4907509	29	2.0	29	100	0	118	10	23	13	52	1.71
4921916--4921944	15	1.9	15	100	0	58	62	0	3	34	1.12
4921947--4921984	7	5.4	7	81	12	51	55	2	0	42	1.14
4922947--4922991	22	2.0	22	86	0	63	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4926441--4926492	24	2.2	24	96	0	95	36	9	17	36	1.82
4930642--4930697	27	2.1	27	82	0	67	37	10	37	14	1.81
4943236--4943276	17	2.4	16	88	8	55	41	2	4	51	1.36
4943353--4943380	12	2.3	12	100	0	56	21	0	0	78	0.75
4943897--4944326	221	2.0	219	81	5	519	52	4	7	35	1.51
4954484--4954706	123	1.8	123	90	1	358	31	15	22	30	1.95
4959998--4960071	32	2.3	31	80	11	87	28	0	6	64	1.18
4966257--4966282	2	13.0	2	100	0	52	50	0	0	50	1.00
4970488--4970577	46	1.9	47	90	2	146	33	18	23	24	1.97
4980441--4980483	22	2.0	22	90	0	68	44	9	11	34	1.73
4981284--4981313	12	2.5	12	100	0	60	33	16	20	30	1.94
4984386--4984427	22	1.9	22	95	0	75	45	7	11	35	1.69
4986498--4986630	27	4.9	27	91	0	203	15	8	36	40	1.77
4986488--4986626	9	15.4	9	74	5	111	14	8	36	40	1.77
4996142--4996190	25	2.0	25	95	0	89	32	24	8	34	1.85
4996149--4996253	54	1.9	54	86	0	147	25	21	13	39	1.90
4996174--4996253	25	2.9	29	80	14	105	23	20	15	41	1.89
4996149--4996241	25	3.6	25	80	11	96	26	21	11	39	1.88
5000365--5000590	61	3.7	59	75	8	193	34	15	13	37	1.86
5007926--5007961	2	18.0	2	100	0	72	0	50	0	50	1.00
5013009--5013044	14	2.6	14	91	8	56	44	0	0	55	0.99
5013044--5013087	21	2.0	21	86	4	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5013355--5013387	16	2.0	17	88	5	50	57	0	0	42	0.98
5020697--5020729	14	2.4	14	90	10	50	45	0	0	54	0.99
5020965--5021035	30	2.4	30	83	6	92	61	1	1	35	1.13
5028863--5028913	20	2.5	20	90	0	75	37	0	3	58	1.16
5031137--5031321	93	2.0	93	91	2	300	25	12	16	45	1.82
5032153--5032194	14	2.9	14	82	3	57	47	0	9	42	1.36
5032298--5032337	20	2.0	21	85	5	55	57	0	0	42	0.98
5032334--5032418	9	9.6	9	67	11	50	50	0	1	48	1.08
5032345--5032384	15	2.6	16	84	4	55	50	0	2	47	1.14
5032462--5032507	23	2.0	23	95	0	83	43	0	2	54	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100