genome.fa.s168.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  45  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8362749--8362958	64	3.2	64	83	9	266	27	20	17	35	1.94
8363484--8363801	121	2.6	121	91	0	519	31	16	15	36	1.90
8363803--8363863	23	2.7	23	84	2	79	26	26	21	26	1.99
8364000--8364227	110	2.1	110	84	4	291	25	21	15	36	1.94
8364082--8364406	176	1.8	176	81	5	397	25	20	16	36	1.94
8364257--8364520	110	2.4	110	84	6	347	24	18	17	39	1.92
8364484--8364593	22	5.0	22	72	16	102	29	21	17	31	1.96
8364013--8364905	286	3.1	285	84	3	1082	25	20	17	37	1.94
8364476--8364594	43	2.7	44	84	10	154	28	21	17	31	1.96
8364367--8364689	176	1.8	176	85	1	459	25	20	17	37	1.94
8364543--8364805	109	2.4	110	85	1	368	23	20	18	37	1.94
8364769--8364856	22	3.9	23	74	14	76	27	19	19	34	1.96
8364806--8364866	23	2.6	25	77	12	67	27	14	18	39	1.90
8365069--8365118	20	2.5	20	81	18	68	58	0	0	42	0.98
8365076--8365134	27	2.2	27	84	6	75	66	0	0	33	0.92
8367643--8367692	25	2.0	25	88	0	73	52	10	32	6	1.59
8369820--8369897	23	3.2	23	66	16	57	39	7	14	38	1.74
8372459--8372490	2	16.0	2	93	0	55	50	3	0	46	1.17
8372461--8372575	58	2.0	56	96	3	212	42	8	6	41	1.62
8382130--8382190	23	2.7	23	80	9	74	40	0	0	59	0.98
8382739--8382813	36	2.1	36	97	0	141	28	14	8	49	1.71
8383071--8383122	21	2.4	21	81	12	61	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8383071--8383122	22	2.4	22	81	12	63	55	1	0	42	1.10
8388052--8388108	16	3.6	16	79	9	64	31	0	0	68	0.90
8388086--8388133	18	2.8	18	75	6	55	39	0	0	60	0.97
8390082--8390138	25	2.1	27	84	9	73	61	0	0	38	0.96
8391456--8391514	16	3.6	16	86	6	75	11	1	37	49	1.50
8391908--8391969	24	2.6	25	73	14	60	67	3	0	29	1.06
8393233--8393553	109	2.9	110	80	4	315	38	15	21	24	1.93
8393474--8393723	88	2.8	88	85	0	320	42	17	18	22	1.89
8393614--8393862	110	2.3	109	87	2	338	40	18	18	22	1.91
8393818--8393884	23	3.0	23	88	2	100	29	17	23	28	1.97
8393738--8393994	132	1.9	133	88	2	383	40	17	18	23	1.92
8393834--8394104	110	2.5	109	86	3	364	39	17	19	23	1.92
8394053--8394128	23	3.3	23	76	10	84	35	19	18	26	1.95
8393958--8394238	133	2.1	133	86	2	386	39	18	20	22	1.92
8394087--8394348	110	2.4	110	86	0	344	40	17	19	22	1.91
8394303--8394370	23	3.0	23	91	2	102	26	16	26	30	1.96
8393625--8394451	243	3.4	242	85	2	1113	39	17	19	22	1.92
8394201--8394479	133	2.1	132	85	5	375	36	16	21	25	1.94
8394621--8394682	32	1.9	32	96	0	115	46	14	12	25	1.80
8394499--8394805	153	2.0	154	93	0	526	37	15	14	31	1.88
8402281--8402322	18	2.3	19	84	8	52	19	9	42	28	1.82
8403192--8403222	16	1.9	16	93	0	53	19	0	35	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8403178--8403287	51	2.2	51	81	6	125	15	0	35	49	1.45
8404862--8404897	3	11.7	3	94	5	63	63	0	0	36	0.94
8404896--8404930	3	11.7	3	100	0	70	34	0	0	65	0.93
8409594--8409631	15	2.5	16	83	12	53	47	0	0	52	1.00
8413599--8413631	9	3.7	9	88	12	50	3	9	0	87	0.63
8418576--8418637	31	2.0	31	90	0	97	38	12	8	40	1.73
8419520--8419604	38	2.2	38	79	4	91	48	1	0	50	1.08
8420089--8420116	2	14.0	2	100	0	56	50	0	0	50	1.00
8423493--8423550	26	2.3	25	79	8	64	51	0	3	44	1.18
8423560--8423624	24	2.8	24	79	6	71	41	0	1	56	1.08
8423590--8423636	16	2.7	17	80	9	51	42	0	0	57	0.98
8425006--8425044	2	19.5	2	94	0	69	51	46	2	0	1.14
8426433--8426481	25	2.0	25	95	0	89	38	4	36	20	1.72
8435948--8436020	24	3.1	23	75	20	71	57	2	0	39	1.13
8436058--8436114	27	2.2	24	79	14	60	54	7	1	36	1.38
8436315--8436358	3	14.7	3	100	0	88	31	0	0	68	0.90
8436484--8436534	13	3.8	13	78	5	57	49	1	3	45	1.32
8436584--8436621	18	2.2	16	90	9	58	28	0	0	71	0.87
8436584--8436621	8	4.5	8	87	12	58	28	0	0	71	0.87
8436638--8436683	22	2.0	24	91	8	78	56	0	0	43	0.99
8436638--8436672	12	3.1	12	84	16	56	51	0	0	48	1.00
8436640--8436686	12	4.0	12	81	10	53	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8436648--8436687	13	3.2	13	82	7	55	62	0	0	37	0.95
8437138--8437183	6	6.9	7	78	16	53	60	0	0	39	0.97
8437141--8437189	19	2.4	20	86	13	73	61	0	0	38	0.96
8435812--8438393	663	4.0	656	80	11	2599	44	7	5	42	1.55
8437261--8437339	23	3.4	25	71	20	71	51	0	1	46	1.08
8437339--8437390	19	2.7	19	78	0	59	61	3	0	34	1.14
8435812--8438393	654	4.0	657	79	11	2510	44	7	5	42	1.55
8437362--8437419	26	2.3	25	81	3	71	51	6	1	39	1.39
8437759--8437799	13	3.2	13	78	0	55	51	0	4	43	1.23
8438241--8438281	3	13.7	3	100	0	82	31	0	0	68	0.90
8438392--8438452	32	1.9	32	93	0	104	52	1	1	44	1.20
8439584--8439624	16	2.6	16	84	0	55	41	0	7	51	1.30
8441704--8441737	18	1.9	17	88	5	50	55	0	0	44	0.99
8445069--8445115	24	1.9	25	82	4	60	46	0	2	51	1.13
8446644--8446701	26	2.3	25	79	8	64	51	0	3	44	1.18
8446690--8446734	21	2.1	22	88	12	67	53	0	0	46	1.00
8446693--8446748	22	2.6	21	80	8	60	53	0	0	46	1.00
8446732--8446778	16	2.7	17	80	9	51	42	0	0	57	0.98
8446699--8446757	23	2.5	24	81	8	68	47	0	0	52	1.00
8449551--8449599	25	2.0	25	95	0	89	38	4	36	20	1.72
8460971--8461056	30	2.7	31	84	8	95	48	25	1	24	1.58
8460954--8461091	15	8.9	16	73	11	83	47	28	1	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8460964--8461168	16	12.9	16	70	14	122	47	30	1	20	1.59
8461073--8461147	24	3.1	24	71	5	80	46	33	1	18	1.58
8461057--8461219	64	2.6	63	82	5	197	45	31	1	21	1.62
8461233--8461280	14	3.3	14	77	11	51	52	25	2	20	1.58
8461203--8461335	29	4.6	28	73	14	85	45	30	1	22	1.62
8461204--8461335	58	2.3	56	78	10	131	45	30	1	22	1.62
8462482--8462534	26	2.0	26	81	0	61	28	1	3	66	1.20
8466112--8466148	13	2.9	12	88	11	56	89	8	0	2	0.58
8466111--8466148	14	2.8	13	88	7	58	89	7	0	2	0.57
8466721--8466776	11	5.1	11	81	14	62	87	3	3	5	0.74
8466721--8466776	21	2.8	20	82	15	71	87	3	3	5	0.74
8468336--8468370	12	2.9	12	91	0	52	25	17	14	42	1.86
8468487--8468573	41	2.1	41	91	4	140	35	22	16	25	1.94
8468630--8469087	121	3.8	121	86	4	631	35	14	13	35	1.86
8468633--8469087	243	1.9	239	88	4	682	35	14	14	35	1.87
8469069--8469128	22	2.7	22	80	7	68	28	30	15	26	1.96
8469188--8469259	23	3.2	23	86	4	101	26	25	20	27	1.99
8469195--8469279	22	3.8	22	82	4	82	29	25	18	25	1.98
8469057--8469390	155	2.2	154	84	5	451	25	21	18	34	1.96
8469240--8469590	110	3.2	109	84	4	445	23	20	17	38	1.93
8469571--8469630	23	2.7	23	86	2	86	25	20	23	31	1.98
8469651--8470359	74	9.6	73	76	9	545	19	21	13	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8470150--8470356	39	5.5	38	72	12	151	18	21	14	45	1.85
8469651--8470325	295	2.3	293	82	6	810	19	21	13	45	1.84
8470463--8470887	102	4.2	102	87	0	555	20	19	13	45	1.84
8470979--8471090	35	3.2	35	88	3	156	16	15	16	51	1.76
8472542--8472593	22	2.3	23	80	12	63	48	0	3	48	1.20
8472923--8473223	78	3.9	76	78	9	292	46	29	1	22	1.63
8473083--8473122	16	2.6	15	92	4	62	45	37	0	17	1.49
8472938--8473141	15	12.9	16	72	10	118	46	30	2	20	1.64
8473130--8473182	23	2.4	22	80	3	61	41	30	1	26	1.66
8473158--8473191	14	2.4	14	90	0	50	47	32	0	20	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100