genome.fa.s168.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  87  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15360412--15361340	180	5.2	180	77	8	804	38	9	9	41	1.70
15361215--15361478	143	1.8	145	84	1	361	40	6	9	44	1.62
15360713--15362007	681	1.9	680	80	4	1486	40	8	9	41	1.67
15361328--15366988	181	31.1	181	71	11	2030	40	8	10	40	1.70
15360551--15362197	862	1.9	859	80	4	1897	40	8	9	41	1.68
15361359--15367003	362	15.5	358	72	11	3036	40	8	10	40	1.70
15362515--15362566	25	2.1	25	96	0	95	51	15	5	26	1.65
15362572--15362619	17	2.7	18	80	6	53	41	4	12	41	1.62
15363097--15363148	18	2.9	18	69	13	54	46	9	5	38	1.61
15361328--15366972	361	15.5	360	72	10	2971	40	8	10	40	1.70
15365552--15365622	36	1.9	38	91	5	119	39	2	5	52	1.40
15365372--15365790	218	1.9	216	81	8	494	38	7	10	43	1.68
15367010--15367644	181	3.5	178	77	8	603	40	9	11	38	1.73
15367608--15367640	18	1.9	17	88	11	50	48	6	6	39	1.53
15367603--15367649	19	2.7	18	80	12	62	44	4	10	40	1.59
15367660--15372598	181	27.4	180	74	7	3244	40	10	8	40	1.69
15369646--15369693	25	1.9	25	95	0	87	37	12	6	43	1.68
15369641--15369696	25	2.5	21	75	22	60	35	10	7	46	1.66
15367666--15372598	899	5.5	895	75	7	3867	40	10	8	40	1.69
15367666--15374060	538	11.7	536	73	10	3559	41	10	8	40	1.69
15372538--15372664	66	1.9	67	86	1	184	36	12	9	41	1.75
15372004--15373134	603	1.9	603	80	7	1321	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15372595--15374073	181	8.3	181	75	7	1019	41	10	7	40	1.67
15372621--15374060	362	4.0	356	78	8	1147	42	9	7	40	1.66
15374103--15376132	180	11.4	180	74	9	1430	41	10	8	39	1.70
15376586--15378328	181	9.6	181	78	4	1417	41	9	8	40	1.68
15376586--15378328	361	4.8	362	77	7	1422	41	9	8	40	1.68
15376586--15378165	542	2.9	534	81	4	1647	42	9	7	40	1.67
15378328--15378693	177	2.1	179	83	6	458	40	6	10	42	1.65
15378447--15378999	306	1.8	305	83	4	729	40	7	11	40	1.69
15378733--15383352	181	25.7	181	75	7	3045	40	7	9	41	1.68
15378733--15383352	361	12.8	360	75	7	3089	40	7	9	41	1.68
15380569--15380612	17	2.6	18	85	7	56	47	2	6	43	1.42
15378745--15391159	541	23.1	538	71	12	4975	40	8	9	40	1.69
15383017--15383350	178	1.9	176	80	2	391	40	5	11	41	1.66
15383439--15383738	166	1.8	164	79	5	354	36	7	11	45	1.67
15383656--15385554	537	3.5	532	77	8	1689	39	9	10	41	1.71
15383779--15385450	357	4.7	354	75	10	1029	39	9	10	41	1.72
15383603--15385566	176	11.0	179	74	8	1361	39	8	10	41	1.71
15385445--15385705	143	1.8	144	88	5	404	40	7	9	42	1.65
15385283--15385886	324	1.9	324	83	4	790	41	8	8	40	1.67
15385101--15386063	505	1.9	505	81	4	1183	41	9	9	40	1.69
15385555--15388458	181	16.0	180	75	8	2202	41	9	9	40	1.69
15385555--15388458	361	8.0	362	75	8	2325	41	9	9	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15387169--15387581	215	1.9	215	83	2	526	41	9	9	39	1.70
15387411--15388458	542	1.9	538	82	3	1311	39	8	10	41	1.69
15388310--15388584	136	2.0	134	80	1	298	42	8	9	39	1.68
15388138--15388772	317	2.0	316	81	5	746	40	8	9	41	1.67
15388454--15391159	181	14.9	180	69	12	1085	41	8	9	40	1.69
15389724--15389791	35	2.0	34	91	2	109	39	4	7	48	1.51
15388454--15391159	360	7.4	360	71	11	1454	41	8	9	40	1.69
15391491--15391526	16	2.1	17	90	10	56	41	5	8	44	1.58
15392294--15392347	21	2.5	22	82	8	67	14	22	31	31	1.94
15392294--15392354	21	2.9	21	76	13	63	13	21	32	32	1.91
15394870--15395032	73	2.2	73	81	2	184	25	26	18	28	1.98
15394905--15395046	73	2.0	72	87	1	203	23	26	20	29	1.99
15400543--15400598	21	2.7	21	81	10	62	17	23	30	28	1.97
15401148--15402522	181	7.5	181	74	10	930	42	9	8	39	1.68
15401148--15402519	363	3.7	357	73	12	888	42	9	8	39	1.68
15401902--15402268	192	1.9	195	81	8	444	42	10	8	38	1.69
15402778--15403098	168	1.9	167	81	6	382	41	8	8	42	1.65
15402533--15406639	363	11.5	357	72	11	2391	40	8	9	41	1.69
15402943--15406591	181	20.4	181	74	7	2604	40	8	9	41	1.68
15402951--15406591	544	6.8	535	75	9	2153	40	8	9	41	1.68
15406688--15407073	175	2.2	180	80	7	432	42	7	8	41	1.63
15407755--15409212	181	7.9	181	73	10	954	41	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407764--15409212	357	3.9	356	74	11	1146	41	8	9	41	1.67
15408540--15409212	180	3.7	178	78	6	628	42	8	9	40	1.67
15409080--15409357	145	1.9	147	87	8	417	40	6	10	42	1.65
15409197--15409967	180	4.3	181	79	5	776	40	8	9	40	1.70
15409525--15409572	18	2.8	17	78	12	53	47	4	8	39	1.53
15408687--15409718	507	2.0	502	81	4	1193	41	8	9	40	1.69
15410997--15412365	180	7.6	178	76	8	1028	41	10	7	40	1.68
15410997--15412365	359	3.8	356	76	9	1153	41	10	7	40	1.68
15411896--15412296	179	2.2	180	81	3	470	43	10	5	40	1.63
15415275--15415332	25	2.3	25	93	0	98	20	17	29	32	1.95
15417480--15418092	176	3.4	176	78	7	567	38	10	8	42	1.70
15417946--15418211	147	1.8	147	86	1	390	36	11	12	40	1.78
15417617--15418565	502	1.9	504	80	5	1112	39	10	8	40	1.71
15418106--15418724	180	3.5	178	77	10	559	42	10	8	38	1.69
15418741--15418776	17	2.1	17	94	0	63	33	2	5	58	1.36
15418978--15419010	18	1.9	17	88	11	50	48	3	6	42	1.43
15419604--15422761	182	17.5	181	75	6	2408	39	8	10	42	1.69
15418777--15425080	361	17.7	355	72	11	2168	39	8	10	41	1.68
15422967--15422996	15	2.0	15	93	0	51	36	0	0	63	0.95
15422753--15423573	180	4.6	180	80	4	855	40	7	8	43	1.64
15422844--15423552	359	2.0	361	82	3	883	41	7	8	43	1.62
15423416--15423729	156	2.0	155	83	7	395	39	7	9	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15423581--15425131	181	8.6	180	73	7	997	40	7	10	41	1.68
15425174--15426827	182	9.2	180	76	7	1296	41	8	9	41	1.66
15425426--15426849	545	2.6	532	79	5	1472	41	8	8	41	1.66
15428476--15429349	181	4.9	180	77	5	794	39	8	10	41	1.69
15428476--15429343	360	2.4	362	80	5	928	39	8	10	41	1.69
15429106--15429624	280	1.9	280	80	4	625	39	8	10	41	1.70
15428915--15429810	461	1.9	459	80	4	1027	39	8	10	41	1.70
15429374--15430064	181	3.8	180	77	5	671	39	8	10	40	1.72
15429908--15430212	146	2.1	147	85	1	416	40	9	9	40	1.69
15430088--15437336	181	40.4	178	74	8	4096	40	7	9	42	1.67
15430884--15430920	18	2.1	18	100	0	74	54	0	10	35	1.36
15430084--15437336	358	20.2	356	74	8	3168	40	7	9	42	1.67
15430902--15437322	181	35.9	181	75	7	4224	40	7	9	42	1.67
15430075--15437322	900	8.1	893	75	8	4215	40	7	9	42	1.67
15435115--15435152	19	2.1	19	90	5	60	42	0	2	55	1.14
15437404--15439879	363	6.9	359	74	9	1328	39	8	10	41	1.70
15437370--15439902	181	14.1	181	76	5	1951	39	8	10	41	1.71
15438725--15439046	165	1.9	167	80	7	368	40	9	9	40	1.70
15440512--15441644	541	2.1	530	79	6	1205	41	9	8	39	1.69
15440252--15445540	181	29.1	180	69	12	1266	42	9	8	39	1.69
15441659--15441718	25	2.4	25	86	2	86	45	11	8	35	1.71
15441715--15444560	181	15.8	178	75	10	1758	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441055--15442468	785	1.8	783	80	5	1706	42	11	8	38	1.71
15442863--15443179	167	1.9	167	83	3	406	41	9	10	38	1.71
15443871--15444254	195	2.0	194	92	1	644	40	9	9	39	1.71
15444606--15445359	355	2.1	357	81	6	859	42	9	8	40	1.66
15445080--15446019	495	1.9	496	84	6	1260	42	11	8	37	1.70
15445804--15446234	177	2.4	181	79	9	456	44	9	8	37	1.67
15445549--15450280	181	26.4	176	70	12	1631	41	10	8	39	1.70
15446175--15446455	157	1.8	153	82	4	357	43	9	8	38	1.68
15446303--15449314	181	16.8	181	74	9	2054	41	9	8	39	1.69
15446798--15452822	719	8.4	710	72	12	1724	41	9	8	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100