genome.fa.s168.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  62  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11357418--11357540	27	4.4	28	77	11	78	63	6	0	29	1.25
11357878--11357913	17	2.1	17	89	5	54	27	2	2	66	1.19
11357901--11357939	20	1.9	21	89	5	62	41	2	0	56	1.13
11357893--11357955	29	2.2	29	94	0	108	38	1	0	60	1.07
11357878--11357973	29	3.4	27	72	16	54	34	3	3	59	1.29
11357752--11357948	9	21.2	9	66	17	73	37	2	5	54	1.36
11367194--11367295	45	2.3	45	86	1	143	50	12	17	18	1.77
11368201--11368487	55	5.2	56	70	9	185	24	21	13	40	1.89
11368712--11368877	3	58.3	3	70	20	90	32	3	4	59	1.34
11368718--11368877	16	9.4	17	70	21	97	32	3	4	60	1.32
11368732--11368877	13	11.6	12	71	20	61	33	2	4	59	1.31
11368735--11368840	5	21.2	5	73	21	71	36	0	5	56	1.29
11368749--11368850	28	3.8	27	79	15	97	35	1	5	56	1.35
11368735--11368837	36	2.8	36	76	16	111	36	0	5	56	1.30
11369421--11369445	13	1.9	13	100	0	50	24	0	12	64	1.27
11369719--11369778	13	4.7	13	87	4	86	15	1	5	78	1.00
11369720--11369778	25	2.4	24	83	8	73	15	1	5	77	1.01
11369731--11369784	13	4.3	13	88	6	67	18	1	5	74	1.11
11369733--11369796	25	2.6	25	81	16	80	17	1	6	75	1.09
11369819--11369861	19	2.3	18	80	4	50	37	0	2	60	1.10
11369995--11370023	13	2.3	13	94	5	51	65	6	0	27	1.18
11371863--11371916	26	2.1	25	82	3	63	53	7	7	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11371888--11371932	23	2.0	23	86	8	65	55	2	4	37	1.32
11376164--11376242	29	2.7	30	84	2	106	37	15	17	29	1.90
11377888--11377920	2	16.5	2	93	0	57	51	0	0	48	1.00
11383243--11383288	24	1.9	24	81	0	56	47	10	2	39	1.51
11384217--11384266	18	2.7	19	73	11	50	62	0	4	34	1.14
11384683--11384717	18	1.9	18	100	0	70	48	0	0	51	1.00
11388943--11389044	48	2.1	47	87	3	141	52	5	20	20	1.67
11391697--11392173	143	3.3	142	78	8	378	34	12	13	39	1.82
11396424--11396458	18	2.0	18	94	5	63	71	5	11	11	1.30
11396473--11396618	58	2.5	57	85	4	204	34	13	6	45	1.69
11396629--11396717	5	17.6	5	71	22	62	76	2	0	21	0.90
11396782--11396813	12	2.7	12	100	0	64	12	34	37	15	1.85
11396964--11397007	21	2.0	23	82	8	56	0	40	0	59	0.98
11397537--11397679	22	6.5	22	66	18	59	67	2	4	25	1.19
11397622--11397694	8	9.0	8	73	15	53	61	2	2	32	1.24
11397622--11397693	26	2.8	25	81	10	83	62	2	2	31	1.24
11397701--11397731	16	1.9	16	93	0	53	83	0	16	0	0.64
11397770--11397826	25	2.3	25	84	3	71	66	5	7	21	1.36
11397804--11397838	7	5.1	7	86	6	54	74	0	2	22	0.95
11397806--11397848	13	3.4	13	77	6	52	74	2	4	18	1.10
11397804--11397841	20	1.9	20	94	0	67	76	0	2	21	0.91
11397743--11397848	26	3.9	26	72	19	76	67	4	5	21	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11397990--11398027	9	4.2	9	86	0	58	5	0	7	86	0.69
11398050--11398188	43	3.2	43	89	4	217	42	18	15	23	1.88
11398201--11398259	1	59.0	1	79	0	64	0	1	8	89	0.54
11398194--11398259	34	1.9	34	87	6	98	1	3	7	87	0.69
11398201--11398259	17	3.4	17	93	6	93	0	1	8	89	0.54
11398272--11398611	41	8.1	41	88	3	360	35	21	17	25	1.94
11399593--11399678	8	10.8	8	78	13	79	6	11	1	80	0.96
11399595--11399685	24	3.9	23	79	12	105	7	9	1	81	0.93
11410075--11410233	60	2.7	60	87	7	209	33	15	6	44	1.73
11410244--11410285	21	2.0	21	90	0	66	73	0	7	19	1.05
11410255--11410321	11	5.9	11	71	22	50	70	2	1	25	1.10
11410263--11410337	14	5.2	13	72	20	51	72	2	1	24	1.06
11410631--11410680	20	2.5	20	86	0	64	26	16	20	38	1.92
11410626--11410671	20	2.3	20	81	3	58	30	13	17	39	1.87
11411194--11411310	4	29.8	4	71	13	50	64	2	3	29	1.23
11411158--11411231	26	3.0	24	78	7	60	68	1	5	24	1.18
11411189--11411273	21	3.9	21	82	10	91	65	1	4	28	1.19
11411192--11411308	45	2.4	49	82	13	147	64	2	4	29	1.26
11411192--11411310	24	5.0	25	73	23	91	63	2	4	29	1.26
11411385--11411461	25	3.0	26	81	9	77	66	2	5	25	1.26
11411411--11411463	20	2.6	21	82	14	67	69	1	0	28	0.99
11411411--11411480	13	5.4	12	79	19	70	70	2	1	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11416300--11416435	71	1.9	71	87	0	200	26	12	18	42	1.86
11416296--11416452	71	2.2	70	81	7	190	26	12	18	42	1.85
11416430--11416566	70	1.9	70	81	7	161	27	10	19	42	1.85
11416511--11416619	26	4.6	23	67	21	73	25	14	21	38	1.91
11416769--11416905	40	3.5	40	74	3	125	38	10	13	37	1.79
11417233--11417376	21	6.3	23	67	10	73	33	8	14	43	1.75
11417245--11417396	45	3.4	45	80	6	173	34	8	14	42	1.76
11417238--11417436	90	2.2	91	79	4	215	32	8	14	44	1.74
11417720--11417962	54	4.5	54	76	5	195	28	14	13	42	1.84
11417828--11417946	9	13.4	8	69	20	60	26	12	16	44	1.83
11417720--11417934	18	11.9	18	73	4	146	27	15	13	42	1.85
11418361--11418400	19	2.1	19	86	9	55	12	10	0	77	0.99
11423900--11423979	40	2.0	40	100	0	160	32	17	15	35	1.91
11424125--11424151	2	13.5	2	100	0	54	48	0	0	51	1.00
11431882--11431918	15	2.5	15	95	0	65	35	21	0	43	1.53
11432209--11432273	23	2.9	22	77	11	62	44	0	23	32	1.53
11432327--11432390	27	2.3	26	81	7	65	31	4	18	45	1.70
11432359--11432458	41	2.4	41	76	3	103	38	7	16	39	1.75
11432739--11432805	10	6.6	10	72	8	55	11	4	1	82	0.89
11432739--11432805	19	3.4	18	78	21	64	11	4	1	82	0.89
11432739--11432804	29	2.2	30	86	10	91	12	4	1	81	0.90
11454071--11454096	7	3.7	7	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11458074--11458127	21	2.6	21	88	5	74	29	22	22	25	1.99
11465640--11465678	20	2.0	20	94	0	69	28	2	20	48	1.62
11466030--11466069	21	1.9	21	94	0	71	30	27	25	17	1.97
11470928--11470963	18	2.0	18	94	0	63	38	2	22	36	1.69
11470957--11470995	20	2.0	20	89	0	60	28	2	17	51	1.59
11471349--11471401	21	2.6	21	84	3	72	32	26	26	15	1.95
11474618--11474646	13	2.2	13	100	0	58	27	0	0	72	0.85
11474648--11474688	8	5.2	8	85	2	57	39	0	2	58	1.11
11474674--11474724	21	2.5	21	93	3	86	45	0	1	52	1.12
11477469--11477505	12	3.1	12	92	0	56	56	0	0	43	0.99
11477469--11477531	33	2.0	33	84	9	87	55	0	0	44	0.99
11477494--11477544	21	2.5	20	78	9	59	64	0	0	35	0.94
11477531--11477564	11	2.9	12	86	8	52	85	2	0	11	0.71
11477530--11477567	16	2.5	15	84	16	51	86	2	0	10	0.66
11478552--11478591	18	2.2	19	86	8	57	20	0	10	70	1.16
11478970--11479122	16	9.6	16	72	9	84	45	29	2	22	1.66
11479019--11479096	33	2.4	33	85	6	106	42	34	5	17	1.72
11479001--11479139	16	8.9	15	76	10	102	43	31	2	21	1.67
11479088--11479197	51	2.2	50	83	6	132	47	32	0	20	1.50
11480349--11480395	22	2.2	22	85	7	62	27	0	2	70	0.99
11487190--11487698	33	15.5	33	84	6	613	29	20	15	33	1.94
11488752--11488795	22	2.0	22	90	0	70	25	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11488634--11488860	111	2.0	111	82	3	269	22	20	18	38	1.93
11488805--11488897	37	2.5	37	91	3	143	13	19	18	48	1.81
11489137--11489180	21	2.0	20	83	12	52	52	0	0	47	1.00
11489183--11489229	15	3.1	15	90	3	76	89	6	2	2	0.63
11490595--11490774	16	11.5	16	74	10	140	47	32	2	17	1.60
11490713--11490816	37	3.1	35	80	12	94	49	32	0	18	1.48
11493044--11493093	26	1.9	26	87	0	73	36	12	10	42	1.76
11496321--11496449	63	2.0	63	98	0	249	45	18	5	30	1.72
11498823--11498847	13	1.9	13	100	0	50	32	16	20	32	1.94
11502165--11502192	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100