genome.fa.s168.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  66  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11913922--11914069	16	9.1	16	68	21	62	29	2	5	62	1.28
11914026--11914069	17	2.6	17	88	0	61	31	4	2	61	1.28
11914037--11914069	11	2.8	12	90	9	59	33	6	0	60	1.21
11914646--11914700	20	2.9	18	79	12	65	21	23	20	34	1.97
11915016--11915056	10	4.2	10	81	6	57	17	2	2	78	0.98
11915076--11915162	22	3.9	22	73	23	58	13	8	1	77	1.05
11915078--11915152	32	2.3	32	80	14	84	13	8	1	77	1.05
11915121--11915163	22	1.9	22	90	4	68	13	9	0	76	1.01
11915172--11915468	121	2.5	122	93	1	508	46	7	12	32	1.70
11916984--11917047	30	2.1	30	85	5	85	51	1	7	39	1.40
11917783--11917825	20	2.2	20	86	0	59	48	9	2	39	1.48
11917919--11917960	18	2.3	18	83	0	66	61	4	2	30	1.29
11918092--11918126	17	2.1	17	88	0	52	31	0	8	60	1.27
11918154--11918203	24	2.2	22	89	7	73	34	4	4	58	1.36
11918154--11918203	23	2.2	23	85	7	66	34	4	4	58	1.36
11918154--11918214	23	2.7	23	73	14	65	39	3	3	54	1.33
11920059--11920118	31	1.9	31	93	0	102	33	11	15	40	1.83
11920550--11920582	16	2.1	16	88	5	50	42	3	0	54	1.15
11922218--11922243	13	2.0	13	100	0	52	61	23	0	15	1.33
11923213--11923245	15	2.2	15	100	0	66	45	0	0	54	0.99
11923790--11923826	2	18.5	2	100	0	74	51	0	0	48	1.00
11928280--11928347	30	2.3	29	78	12	75	19	7	25	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928527--11928598	30	2.4	30	86	2	92	18	12	13	55	1.69
11929214--11929344	42	3.1	42	89	0	217	20	15	38	25	1.91
11930987--11931011	12	2.1	12	100	0	50	32	0	0	68	0.90
11932537--11932597	17	3.3	16	71	28	50	18	3	3	75	1.08
11934730--11935076	57	5.8	57	87	9	468	44	8	13	34	1.74
11934746--11934834	27	3.2	27	62	20	65	41	6	14	37	1.72
11934738--11935076	121	2.9	117	87	9	476	43	8	13	33	1.74
11935560--11935585	13	2.0	13	100	0	52	38	7	7	46	1.61
11937874--11937907	3	10.7	3	87	12	50	32	0	2	64	1.08
11937889--11938000	35	3.3	34	74	15	97	31	0	6	61	1.27
11938480--11938538	31	1.9	31	89	6	93	27	20	22	30	1.98
11938593--11938638	20	2.3	20	88	3	67	26	28	19	26	1.99
11938957--11939030	27	2.9	25	84	6	78	9	2	6	81	0.97
11938984--11939030	12	4.1	11	82	12	51	10	2	6	80	0.96
11939053--11939090	10	3.9	10	83	16	53	18	0	0	81	0.69
11939054--11939091	14	2.6	15	84	16	53	18	0	0	81	0.69
11939106--11939768	57	11.1	57	80	11	656	46	8	12	32	1.72
11939112--11939756	116	5.4	115	88	7	875	45	8	13	33	1.73
11941038--11941118	31	2.6	31	80	7	101	28	18	18	34	1.95
11943662--11943707	24	1.9	24	82	8	58	50	4	19	26	1.66
11943989--11944061	30	2.4	30	88	0	101	21	6	35	35	1.81
11944022--11944085	30	2.1	30	82	0	74	23	7	32	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11943883--11944146	144	1.8	145	88	4	408	22	10	32	34	1.89
11943883--11944193	144	2.2	145	83	5	389	22	11	31	34	1.89
11946711--11946768	29	2.0	29	83	6	73	15	3	25	55	1.56
11946955--11947022	30	2.3	30	82	7	77	19	16	14	50	1.79
11948776--11948865	30	3.0	30	79	6	85	14	13	41	31	1.84
11948823--11948885	30	2.1	30	87	0	90	20	12	38	28	1.89
11948857--11949136	114	2.5	114	81	2	330	22	13	30	33	1.92
11949386--11949481	30	3.2	30	96	0	174	17	15	34	32	1.92
11949470--11949664	33	5.8	33	82	3	228	21	20	28	29	1.98
11949470--11949688	33	6.4	36	80	4	156	21	20	29	28	1.98
11949556--11949698	69	2.1	69	85	0	187	20	25	30	24	1.99
11951132--11951195	30	2.1	30	85	5	85	51	1	7	39	1.40
11951851--11951907	27	2.1	28	83	9	73	49	3	1	45	1.29
11951959--11952001	19	2.3	19	84	11	61	51	6	2	39	1.42
11951960--11952002	20	2.2	19	87	4	59	53	6	2	37	1.41
11952010--11952058	17	3.0	15	80	11	53	55	2	2	40	1.23
11952184--11952273	20	4.7	18	81	11	92	34	0	5	60	1.20
11952252--11952308	17	3.3	17	76	9	53	29	3	8	57	1.45
11952184--11952309	18	6.8	18	70	16	55	33	1	6	58	1.33
11952252--11952308	27	2.2	25	84	6	69	29	3	8	57	1.45
11952296--11952340	23	2.0	23	86	8	65	26	2	2	68	1.12
11952404--11952490	44	2.0	42	82	8	104	29	1	8	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11953775--11953810	18	2.0	18	88	0	54	33	2	5	58	1.36
11954691--11954750	30	2.0	30	83	6	77	50	5	10	35	1.58
11956361--11956464	8	11.6	9	78	13	83	76	0	11	10	1.06
11956358--11956464	9	11.7	10	75	16	58	75	0	12	11	1.09
11956371--11956476	38	2.9	38	75	17	84	74	0	14	11	1.07
11957476--11958100	42	15.1	40	89	8	843	23	16	21	38	1.93
11957476--11958100	83	7.6	83	91	5	897	23	16	21	38	1.93
11957476--11958100	208	3.0	206	95	2	1087	23	16	21	38	1.93
11958108--11958200	8	11.2	8	77	22	79	84	8	0	6	0.76
11958108--11958206	22	4.5	21	79	15	94	84	8	0	7	0.76
11958135--11958200	10	6.4	10	86	11	80	84	6	0	9	0.76
11958115--11958206	29	3.2	27	78	20	89	84	7	0	7	0.77
11958108--11958193	1	86.0	1	74	0	64	86	8	0	5	0.72
11958113--11958200	41	2.1	43	87	8	128	85	7	0	6	0.75
11958309--11958367	20	3.0	20	94	0	100	18	30	28	22	1.97
11958529--11958557	3	9.7	3	100	0	58	31	0	0	68	0.89
11959053--11959125	31	2.3	32	76	9	78	27	23	24	24	2.00
11959180--11959226	19	2.5	19	82	0	58	29	29	19	21	1.97
11959600--11960060	156	2.9	161	93	3	765	28	14	17	39	1.88
11969871--11969937	2	34.5	2	85	5	93	47	0	2	49	1.16
11969932--11969996	33	2.0	33	93	0	112	35	9	12	43	1.74
11976084--11976118	14	2.5	14	95	0	61	34	11	5	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11978153--11978376	108	2.1	107	81	2	252	22	7	37	33	1.82
11984671--11985306	60	10.0	60	75	12	421	22	22	31	23	1.98
11984671--11984970	30	10.0	30	84	3	318	23	20	31	24	1.98
11984977--11985102	30	4.2	30	92	0	189	23	21	31	23	1.98
11984883--11985072	102	1.9	102	87	0	281	23	23	30	22	1.99
11984853--11985306	132	3.4	132	89	0	649	22	23	31	21	1.98
11985006--11985352	102	3.4	101	75	9	371	23	21	31	23	1.98
11985109--11985234	30	4.2	30	87	0	153	23	20	32	23	1.98
11985241--11985306	30	2.2	30	91	0	105	21	21	34	22	1.96
11985167--11985352	72	2.6	72	85	0	237	22	21	32	23	1.98
11985424--11985497	30	2.5	30	90	0	121	20	6	37	35	1.79
11985952--11986099	72	2.1	72	89	2	226	33	15	4	46	1.67
11999302--11999343	22	1.9	22	90	0	66	33	11	9	45	1.73
11999554--11999618	25	2.7	24	88	6	96	15	30	18	35	1.92
12003261--12003302	22	1.9	22	90	0	66	33	11	9	45	1.73
12008753--12008790	12	3.2	12	88	0	58	60	15	23	0	1.35
12013239--12013303	7	9.4	7	80	9	64	18	0	1	80	0.80
12013270--12013303	12	2.8	12	95	4	59	14	0	0	85	0.60
12019128--12019679	274	2.0	274	94	0	980	25	22	11	41	1.87
12020725--12020754	15	2.0	15	93	0	51	50	30	0	20	1.49
12024559--12024940	105	3.6	105	80	6	396	28	8	14	48	1.72
12028606--12028652	22	2.1	22	84	7	60	34	8	8	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12034301--12034344	19	2.3	19	84	11	54	38	2	0	59	1.10
12037623--12037653	8	3.9	8	91	0	53	58	0	0	41	0.98
12039815--12039870	18	3.0	20	75	21	66	62	3	0	33	1.12
12043091--12045999	728	4.0	725	92	1	4873	35	12	19	32	1.89
12054063--12054101	19	2.1	19	85	9	53	71	0	2	25	0.98
12056298--12056398	33	3.4	30	73	19	95	30	0	3	64	1.18
12063744--12063792	25	2.0	25	87	0	71	32	28	6	32	1.82
12066117--12066160	22	2.0	22	95	0	79	43	13	11	31	1.80
12069758--12069815	25	2.5	24	86	8	75	39	18	27	13	1.89
12069963--12070006	22	2.0	22	95	0	79	43	13	11	31	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100