genome.fa.s168.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  34  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6400589--6400651	25	2.9	19	72	26	54	49	6	0	44	1.28
6402653--6402732	24	3.4	23	74	14	74	80	0	16	3	0.86
6402679--6402728	18	2.7	18	76	14	57	80	0	16	4	0.87
6402651--6402719	26	2.7	26	84	8	81	79	0	15	4	0.88
6403554--6403587	14	2.4	14	85	0	50	82	2	11	2	0.89
6403554--6403630	24	3.0	24	71	14	64	77	2	15	3	1.02
6405283--6405358	26	3.0	25	84	5	98	39	11	15	32	1.84
6405303--6405358	26	2.2	26	96	0	103	39	10	16	33	1.83
6405721--6405799	40	2.0	40	82	0	95	43	15	6	35	1.72
6408650--6408708	14	4.3	13	72	10	55	45	22	0	32	1.52
6408720--6408769	26	2.0	25	88	7	75	40	38	0	22	1.54
6409618--6409664	20	2.3	20	85	0	58	57	8	2	31	1.41
6413087--6413221	42	3.2	42	86	2	182	42	7	28	21	1.80
6413087--6413259	42	4.1	42	83	3	179	41	10	27	20	1.85
6420988--6421023	2	18.0	2	100	0	72	50	0	0	50	1.00
6421022--6421052	3	10.3	3	92	0	53	32	32	0	35	1.58
6428805--6429321	116	4.6	116	88	5	758	20	7	27	44	1.77
6428805--6429321	225	2.3	226	91	1	806	20	7	27	44	1.77
6434307--6434361	24	2.4	24	85	8	71	70	7	5	16	1.28
6434531--6434894	49	7.5	49	83	5	395	28	11	21	38	1.88
6434531--6434894	148	2.5	142	84	5	439	28	11	21	38	1.88
6435137--6435176	21	2.0	20	90	5	62	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6435176--6435231	13	4.2	13	75	11	51	78	7	0	14	0.95
6436147--6436176	11	2.6	12	94	5	53	20	0	3	76	0.92
6437372--6437404	16	2.1	16	94	0	57	24	15	12	48	1.78
6443696--6443927	117	2.0	115	94	1	401	27	13	18	41	1.87
6445740--6445890	24	6.2	24	77	12	137	11	29	23	35	1.90
6448189--6448215	4	6.8	4	100	0	54	22	0	0	77	0.76
6448828--6448884	21	2.7	22	83	8	82	43	0	0	56	0.99
6448830--6448883	20	2.5	20	83	16	65	46	0	0	53	1.00
6448871--6448927	16	3.7	16	75	13	57	64	0	0	35	0.93
6448851--6448919	30	2.3	30	76	2	75	59	0	0	40	0.97
6449672--6449736	32	2.0	33	82	8	80	56	7	1	33	1.37
6453047--6453080	17	2.0	17	94	0	59	38	8	23	29	1.85
6458743--6458779	18	2.0	19	89	5	58	18	29	13	37	1.90
6458908--6458992	31	2.7	31	90	0	143	24	27	22	25	2.00
6459482--6459601	52	2.3	52	85	2	152	28	26	7	37	1.83
6459511--6459634	52	2.4	52	81	5	144	27	21	8	42	1.81
6459980--6460083	52	2.0	52	92	0	172	54	10	12	22	1.67
6460595--6460641	20	2.4	19	83	13	60	27	0	2	70	0.99
6467439--6467656	111	2.0	111	96	0	400	14	29	19	36	1.91
6467608--6467691	27	3.5	24	78	13	84	10	28	21	39	1.87
6467667--6467751	24	3.5	24	90	0	116	11	22	30	35	1.90
6478336--6478381	22	2.1	22	100	0	92	26	13	13	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6483073--6483114	19	2.2	19	100	0	84	38	11	30	19	1.88
6488009--6488159	78	1.9	78	95	0	275	23	19	21	36	1.95
6500382--6500421	20	2.0	20	85	0	53	62	0	2	35	1.09
6519210--6519341	66	2.0	66	100	0	264	31	12	30	25	1.92
6526203--6526232	15	2.0	15	100	0	60	33	0	0	66	0.92
6526211--6526253	12	3.9	11	78	9	52	23	2	0	74	0.93
6526296--6526371	30	2.4	31	77	14	75	35	1	0	63	1.03
6526313--6526368	19	2.9	19	86	7	78	37	0	0	62	0.95
6526337--6526388	26	2.0	27	92	3	88	38	0	0	61	0.96
6526337--6526400	26	2.5	26	87	5	85	35	1	1	60	1.15
6526337--6526418	23	3.4	23	77	12	85	37	1	2	58	1.19
6528288--6528330	20	2.2	19	83	4	50	53	2	4	39	1.34
6528354--6528455	36	3.0	34	78	15	95	44	1	1	51	1.23
6529536--6529576	20	2.1	20	86	4	57	31	2	9	56	1.45
6529941--6529996	20	2.7	21	86	5	78	51	0	0	48	1.00
6531505--6531561	28	2.0	28	100	0	114	35	21	24	19	1.96
6533666--6533705	19	2.2	19	86	4	55	70	7	7	15	1.33
6549753--6549788	18	1.9	18	88	5	54	30	0	0	69	0.89
6549774--6549816	22	2.0	22	81	9	52	44	0	0	55	0.99
6553199--6553225	14	1.9	14	100	0	54	33	0	0	66	0.92
6553992--6554044	25	2.1	25	86	6	72	43	3	5	47	1.45
6557090--6557131	20	2.2	20	87	8	61	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6557083--6557134	18	2.9	18	77	11	61	44	0	0	55	0.99
6557184--6557210	14	1.9	14	100	0	54	33	0	0	66	0.92
6557978--6558030	25	2.1	25	86	6	72	43	3	5	47	1.45
6574135--6574177	9	5.2	9	81	18	58	41	0	0	58	0.98
6574892--6574937	23	2.0	24	82	4	58	32	2	6	58	1.36
6575592--6575633	21	2.0	21	86	9	59	4	47	7	40	1.52
6580722--6580765	21	2.1	21	91	0	70	40	18	13	27	1.88
6581792--6581846	28	2.0	28	96	0	101	43	0	14	41	1.45
6583030--6583070	12	3.4	12	86	0	55	60	0	0	39	0.96
6584579--6584619	16	2.6	16	88	7	57	43	7	0	48	1.30
6584599--6584688	30	3.2	27	77	16	78	60	1	0	38	1.04
6584652--6584706	11	5.1	11	78	8	60	65	0	0	34	0.93
6584655--6584697	21	2.0	20	86	8	59	65	0	0	34	0.93
6584614--6584706	32	3.0	31	80	10	102	63	1	0	35	1.02
6588378--6588416	11	3.6	10	89	10	51	23	2	0	74	0.94
6590200--6590399	99	2.0	99	91	1	321	23	26	6	44	1.77
6591266--6591307	12	3.3	13	83	12	52	64	0	21	14	1.29
6591266--6591311	11	3.9	12	83	16	53	67	0	19	13	1.23
6591296--6591327	17	1.9	16	93	6	55	81	0	12	6	0.87
6592658--6592847	85	2.2	87	84	3	242	38	8	10	42	1.71
6592700--6592825	41	3.0	42	75	10	130	36	8	12	42	1.74
6592700--6592926	43	5.3	42	71	12	122	36	11	11	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6593940--6594030	20	4.6	20	77	10	71	72	5	2	19	1.15
6593957--6594029	12	5.7	13	75	10	53	73	6	1	17	1.11
6593984--6594039	19	2.7	22	73	21	57	78	8	0	12	0.96
6593963--6594030	19	3.5	19	75	15	68	75	7	1	16	1.10
6594418--6594469	22	2.3	23	80	3	61	61	3	17	17	1.49
6595035--6595087	16	3.4	15	78	14	54	24	1	1	71	1.06
6596428--6596477	25	1.9	26	92	8	84	44	12	12	32	1.78
6604425--6604480	28	2.0	28	92	0	94	39	0	30	30	1.57
6606147--6606192	17	2.7	17	80	9	58	71	2	0	26	0.97
6606857--6606895	18	2.2	18	85	0	51	10	7	48	33	1.66
6607284--6607315	12	2.7	12	95	0	55	43	0	0	56	0.99
6607556--6607597	22	1.9	22	90	0	66	30	14	26	28	1.95
6607496--6607847	131	2.7	131	82	5	367	39	17	17	24	1.92
6607714--6608044	109	3.1	108	81	8	386	40	18	17	23	1.91
6607936--6608276	87	3.9	86	82	3	396	41	18	18	22	1.90
6607936--6608265	175	1.9	175	84	2	439	41	17	18	22	1.90
6608214--6608343	67	2.0	66	81	4	154	40	19	18	22	1.92
6612292--6612337	12	4.2	11	79	15	51	56	2	0	41	1.11
6612328--6612365	13	3.1	13	85	11	53	57	0	0	42	0.98
6612887--6613146	132	2.0	132	91	0	421	19	20	13	46	1.82
6617408--6617483	16	4.7	17	73	18	72	21	2	30	46	1.65
6617730--6617804	12	5.9	12	72	17	53	26	5	1	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6618574--6618613	18	2.2	18	90	0	62	10	5	50	35	1.58
6619273--6619324	25	2.0	26	85	14	72	48	9	9	32	1.69
6625491--6625520	10	2.8	11	90	10	53	66	10	6	16	1.41
6625831--6625969	31	4.7	30	78	8	126	47	31	1	19	1.58
6625831--6625966	28	4.6	30	79	5	111	48	30	1	19	1.58
6625920--6626009	15	6.1	15	74	14	64	54	28	1	15	1.48
6625957--6626047	7	12.7	7	73	14	62	53	28	3	14	1.56
6626021--6626077	16	3.6	16	92	2	89	57	15	1	24	1.48
6632689--6632748	22	2.7	22	76	5	59	26	23	20	30	1.98
6632812--6633000	87	2.2	88	80	2	211	21	15	16	45	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100