genome.fa.s168.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  41  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7744516--7744948	41	10.6	41	83	4	473	25	12	18	43	1.85
7744516--7744948	81	5.3	82	82	5	493	25	12	18	43	1.85
7744519--7744948	122	3.5	122	84	2	533	25	12	18	43	1.85
7744998--7745022	13	1.9	13	100	0	50	88	0	0	12	0.53
7749392--7749440	25	2.0	25	91	0	80	40	4	12	42	1.61
7750773--7750834	2	31.0	2	96	0	115	51	0	48	0	1.00
7753613--7753647	15	2.3	15	90	5	52	20	0	5	74	1.02
7753753--7753843	20	4.7	20	69	17	68	32	4	12	50	1.59
7753860--7753900	15	2.7	15	85	11	57	39	0	0	60	0.96
7759221--7759263	15	2.7	16	82	10	52	58	0	0	41	0.98
7759250--7759292	18	2.4	18	88	7	61	60	0	2	37	1.10
7761060--7761119	29	2.1	29	100	0	120	36	20	10	33	1.86
7761600--7761624	13	1.9	13	100	0	50	36	24	16	24	1.94
7766864--7766920	3	18.7	3	92	3	96	31	1	0	66	1.02
7767154--7767197	22	2.0	22	82	8	54	59	27	13	0	1.35
7767643--7767685	20	2.2	19	83	8	50	32	6	11	48	1.66
7767651--7767690	19	2.0	20	85	4	55	32	10	10	47	1.70
7768079--7768121	6	7.2	6	86	7	61	16	4	0	79	0.90
7768145--7768354	58	3.7	57	83	6	250	43	9	11	35	1.73
7768153--7768355	114	1.8	112	86	7	295	42	9	12	35	1.75
7772364--7772436	17	4.2	17	75	16	69	80	0	12	6	0.89
7772365--7772433	10	7.5	10	80	19	71	82	0	10	7	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7772365--7772433	18	3.8	18	77	21	72	82	0	10	7	0.84
7773594--7773632	20	2.0	20	84	0	51	38	12	17	30	1.88
7774171--7774293	42	2.9	42	85	4	133	26	13	21	38	1.91
7774334--7774384	20	2.6	19	93	6	93	15	11	25	47	1.80
7774413--7774754	44	7.9	44	81	3	340	23	14	19	42	1.88
7774413--7774789	132	2.9	129	79	5	386	24	14	20	41	1.88
7774626--7774714	41	2.2	41	83	0	115	29	15	16	38	1.90
7774974--7775028	17	3.6	16	76	11	53	29	1	0	69	0.99
7774978--7775062	21	4.0	21	77	13	86	29	3	1	65	1.16
7775474--7775511	20	1.9	20	89	10	60	65	2	31	0	1.06
7775830--7775883	24	2.2	24	83	6	65	18	5	1	74	1.11
7775844--7775889	5	8.4	5	82	17	56	17	2	0	80	0.81
7775907--7776030	56	2.2	56	82	4	151	41	9	10	37	1.72
7778046--7778078	2	16.5	2	100	0	66	51	0	0	48	1.00
7779202--7779229	14	2.0	14	100	0	56	21	0	28	50	1.49
7779258--7779319	30	2.1	30	100	0	124	32	19	16	32	1.94
7780472--7780869	132	3.1	131	93	2	678	47	4	9	38	1.56
7780633--7780830	39	4.7	41	67	21	104	50	5	8	36	1.55
7780985--7781185	47	4.5	45	66	17	114	47	4	9	38	1.58
7780984--7781243	133	2.0	133	95	0	466	47	5	9	38	1.59
7780608--7781306	376	1.9	376	94	1	1251	43	6	9	40	1.63
7781399--7781821	212	2.0	209	82	6	505	40	16	11	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7782826--7782928	52	2.0	51	84	5	136	28	9	7	54	1.61
7797185--7797466	116	2.4	115	84	6	381	37	12	7	43	1.69
7797190--7797487	58	5.1	57	83	8	327	38	11	7	42	1.69
7797582--7797607	3	8.7	3	100	0	52	69	0	0	30	0.89
7798346--7798477	3	41.7	3	70	22	67	63	2	4	29	1.26
7798352--7798518	27	6.5	26	70	16	93	63	1	4	29	1.25
7798345--7798518	77	2.3	74	80	14	196	63	1	4	29	1.24
7798832--7798856	12	2.1	12	100	0	50	44	24	24	8	1.80
7798791--7798896	54	2.0	54	86	1	151	37	19	19	22	1.94
7798844--7799031	83	2.3	84	88	1	272	38	16	18	26	1.91
7798844--7799031	42	4.5	42	87	2	263	38	16	18	26	1.91
7800041--7800091	7	8.0	7	85	14	67	0	11	0	88	0.52
7800046--7800092	18	2.6	17	93	6	76	0	12	0	87	0.55
7800034--7800091	24	2.5	24	91	2	91	1	12	0	86	0.65
7800041--7800110	31	2.3	31	82	9	81	0	15	2	81	0.81
7800044--7800091	1	48.0	1	78	0	51	0	10	0	89	0.48
7810525--7810785	117	2.3	116	78	11	284	38	13	5	42	1.67
7810525--7810795	58	4.7	58	81	8	268	39	12	5	42	1.66
7811327--7811372	24	1.9	24	86	8	67	60	8	2	28	1.38
7811604--7811644	3	13.3	3	94	5	73	65	0	2	31	1.05
7811654--7811749	24	4.0	23	84	9	104	67	1	8	22	1.24
7811679--7811720	20	2.1	20	86	8	59	73	0	4	21	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7811763--7811805	15	3.0	15	80	6	54	58	0	0	41	0.98
7813687--7813733	24	2.0	24	83	8	60	72	2	19	6	1.17
7814097--7814157	9	6.7	9	76	16	63	85	3	8	3	0.82
7814083--7814155	16	4.4	16	80	13	76	83	4	8	4	0.89
7814083--7814181	43	2.3	44	81	11	116	79	3	11	6	1.01
7814082--7814162	17	4.7	17	77	17	78	82	3	8	4	0.92
7814897--7815028	63	2.1	63	82	2	158	37	12	25	25	1.90
7815435--7815483	21	2.3	21	82	10	55	36	4	12	46	1.60
7815456--7815515	32	1.9	31	89	3	93	35	6	15	43	1.72
7815488--7815646	46	3.5	46	91	0	255	38	10	13	38	1.78
7815488--7815644	21	6.8	25	71	14	131	38	10	12	38	1.77
7815488--7815672	21	8.2	22	70	16	121	38	9	13	38	1.77
7815719--7815757	20	2.0	20	84	0	51	46	12	15	25	1.81
7816063--7816561	41	12.2	41	81	2	491	26	12	18	42	1.86
7816066--7816529	122	3.8	121	82	2	500	26	11	18	43	1.84
7816744--7816768	13	1.9	13	100	0	50	80	4	8	8	1.03
7817555--7817592	11	3.3	12	82	10	53	21	0	7	71	1.11
7817995--7818146	51	2.9	53	78	10	161	54	6	8	30	1.56
7818541--7818594	12	4.4	12	76	4	54	50	0	0	50	1.00
7820261--7820328	22	3.1	22	72	16	68	41	0	2	55	1.15
7820277--7820328	23	2.4	22	78	9	61	38	0	3	57	1.17
7820927--7820975	14	3.5	14	72	10	55	77	8	6	8	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7820927--7820980	28	1.9	28	92	0	90	77	9	5	7	1.11
7821235--7821264	14	2.1	14	93	0	51	73	3	0	23	0.98
7821274--7821344	27	2.5	30	79	9	85	70	1	1	26	1.04
7821275--7821344	28	2.4	29	77	17	83	70	1	1	27	1.05
7823208--7823236	2	14.5	2	100	0	58	51	0	0	48	1.00
7823691--7823724	17	2.0	17	88	11	52	14	2	0	82	0.79
7823748--7823774	7	3.9	7	100	0	54	74	0	0	25	0.83
7829012--7829057	12	3.8	12	78	18	51	52	0	0	47	1.00
7828990--7829040	23	2.4	22	81	12	61	47	0	1	50	1.12
7832401--7832553	81	1.9	81	81	1	189	41	11	17	30	1.84
7839848--7839893	21	2.2	20	88	3	65	28	4	0	67	1.10
7840742--7840767	13	2.0	13	100	0	52	23	0	0	76	0.78
7840774--7840806	9	3.9	9	88	11	52	21	0	9	69	1.15
7841005--7841037	17	1.9	17	93	0	57	63	6	3	27	1.32
7846903--7847057	69	2.2	69	93	2	267	33	15	16	34	1.90
7852357--7852394	17	2.2	17	86	9	51	55	0	21	23	1.44
7853252--7853341	46	2.0	46	81	0	108	22	10	20	47	1.79
7853467--7853691	39	5.8	39	84	7	280	23	8	23	44	1.80
7853462--7853677	78	2.8	78	89	6	318	22	7	23	45	1.78
7853467--7853677	117	1.8	116	87	5	318	22	8	23	45	1.79
7853835--7853894	3	20.0	3	96	0	84	26	0	6	66	1.16
7854718--7854772	13	4.3	13	95	2	94	12	7	5	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7854712--7854771	6	9.7	6	74	13	50	13	8	5	73	1.23
7854726--7854785	26	2.3	25	86	8	84	15	5	6	73	1.22
7854847--7854879	12	2.7	13	86	13	52	72	0	6	21	1.05
7855023--7855069	18	2.7	17	79	20	53	72	0	2	25	0.96
7857996--7858099	8	12.5	8	76	15	61	79	2	13	3	0.98
7858807--7858990	63	2.9	64	80	7	189	38	9	23	28	1.85
7859358--7859532	21	7.8	21	67	16	100	39	10	13	36	1.79
7859381--7859557	25	7.6	25	65	21	96	41	11	11	35	1.78
7859354--7859559	46	4.5	46	88	3	290	39	10	12	36	1.78
7859959--7860383	41	10.4	41	82	2	460	25	13	19	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100