genome.fa.s168.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  86  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15268980--15273493	182	25.0	180	74	9	2891	41	9	8	39	1.68
15270248--15270297	20	2.5	20	93	3	84	34	10	12	44	1.75
15268189--15273423	361	14.4	357	74	9	3137	42	9	8	39	1.68
15272546--15272581	16	2.1	17	90	10	56	44	5	5	44	1.50
15273536--15275381	181	10.4	180	73	11	1021	41	10	8	40	1.69
15272879--15274117	635	2.0	634	86	3	1769	41	10	8	39	1.70
15273535--15282233	362	24.2	357	69	13	3242	41	10	8	40	1.68
15273536--15274481	182	5.2	178	80	6	829	41	10	7	40	1.68
15275361--15275417	25	2.3	25	100	0	114	28	10	8	52	1.65
15275398--15276014	175	3.5	177	76	8	426	41	9	8	40	1.69
15275386--15277786	181	13.5	174	70	14	597	40	9	8	41	1.67
15278073--15278140	22	3.1	22	100	0	136	38	13	8	39	1.75
15278234--15282220	181	22.2	179	70	11	1511	41	10	7	40	1.68
15278302--15279622	536	2.4	535	79	6	1227	42	10	6	40	1.65
15278300--15279649	360	3.7	360	76	7	1007	43	9	6	40	1.64
15279512--15279783	134	2.0	134	92	2	449	43	9	6	40	1.62
15279677--15279954	146	1.9	146	82	5	348	43	9	8	38	1.69
15280035--15282233	181	12.3	180	74	9	1512	40	10	8	40	1.70
15281210--15281502	162	1.8	160	83	6	385	39	12	9	38	1.75
15285110--15295673	181	58.5	180	71	11	4758	41	9	8	40	1.68
15290356--15290402	17	2.7	18	74	16	53	42	10	8	38	1.70
15293818--15294504	184	3.8	184	74	8	451	42	11	8	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15294625--15294673	17	2.7	20	76	20	54	38	14	4	42	1.64
15296179--15296930	59	12.7	59	80	10	698	34	13	7	44	1.72
15296179--15296929	178	4.2	175	79	9	767	34	13	7	44	1.72
15296977--15297052	7	10.6	7	76	20	61	81	1	3	13	0.89
15296947--15297051	6	17.7	6	73	14	76	79	1	4	14	0.99
15296957--15297050	11	8.6	11	74	20	56	78	2	5	13	1.01
15296947--15297050	17	5.9	17	76	13	86	78	1	4	14	0.99
15296947--15297039	37	2.6	35	80	14	102	78	2	5	13	1.02
15296948--15297094	17	8.6	17	68	22	62	74	3	3	18	1.09
15296978--15297108	11	10.9	12	70	16	67	75	3	2	19	1.04
15296942--15297109	13	12.0	13	67	20	65	75	2	3	18	1.08
15297939--15297989	20	2.5	21	78	9	61	68	1	3	25	1.17
15298080--15298166	15	5.7	15	70	22	58	72	2	2	22	1.08
15298088--15298197	6	18.3	6	71	14	50	74	2	3	19	1.09
15298110--15298199	18	5.1	17	73	15	58	75	2	3	18	1.05
15298383--15298580	42	4.7	41	89	2	216	35	19	18	25	1.95
15298407--15298580	42	4.1	42	90	2	242	34	20	18	27	1.95
15298408--15298578	85	2.0	84	87	1	243	35	20	18	25	1.95
15299590--15299628	8	4.9	8	81	12	53	10	2	0	87	0.65
15299589--15299628	9	4.8	9	84	12	50	10	2	0	87	0.63
15299591--15299627	15	2.4	15	90	4	56	10	2	0	86	0.67
15310045--15310330	58	4.8	57	80	12	315	33	13	8	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15310044--15310351	120	2.6	120	83	8	387	33	13	8	44	1.74
15310347--15310528	22	8.2	21	66	21	52	73	2	3	20	1.10
15310347--15310452	6	17.5	6	74	13	76	77	1	4	16	1.03
15310378--15310510	17	7.9	17	68	22	50	72	3	3	21	1.11
15310348--15310513	9	18.1	9	67	25	57	72	3	3	20	1.13
15311379--15311418	21	1.9	21	85	10	55	62	10	5	22	1.46
15311446--15311587	6	23.3	6	71	14	51	69	1	4	25	1.15
15311445--15311596	12	12.3	12	75	12	98	69	1	3	24	1.15
15311431--15311510	40	2.0	42	85	5	110	61	1	5	32	1.26
15311498--15311589	6	15.3	6	75	10	82	76	2	2	19	1.00
15311520--15311616	41	2.4	40	81	10	108	78	3	2	16	0.98
15311515--15311596	11	7.2	11	81	8	92	76	2	2	18	1.00
15311795--15312280	181	2.8	169	77	10	403	40	9	7	41	1.67
15311955--15314281	181	12.9	179	76	6	1696	41	10	8	39	1.69
15312028--15313352	720	1.8	724	80	5	1601	41	10	8	39	1.68
15312028--15313630	720	2.2	716	78	6	1550	42	9	7	39	1.68
15314014--15314567	286	1.9	286	83	2	720	38	10	8	42	1.70
15315382--15316020	349	1.8	343	78	8	711	43	8	7	40	1.64
15315732--15318595	181	16.0	181	75	8	1986	41	9	8	40	1.68
15315732--15319144	362	9.5	360	74	8	2018	41	9	8	40	1.68
15318650--15319130	182	2.7	181	78	6	501	39	9	9	41	1.70
15319603--15319947	188	1.8	187	88	4	525	40	11	6	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15319178--15320216	180	5.7	181	75	9	587	40	10	7	40	1.69
15320292--15320762	180	2.7	174	81	8	524	39	9	8	42	1.67
15320867--15323967	181	17.1	179	70	11	897	41	10	9	39	1.70
15321071--15321988	359	2.5	357	82	4	981	42	9	9	38	1.70
15321071--15322032	361	2.7	355	81	5	988	42	9	9	38	1.69
15322037--15323979	181	10.8	178	75	7	1242	41	10	8	39	1.70
15322037--15323823	358	5.0	355	77	6	1280	41	10	8	39	1.71
15322357--15323963	180	8.9	180	74	7	1070	41	10	8	40	1.70
15323976--15327347	181	18.8	180	75	7	2575	40	9	8	40	1.69
15323335--15324634	655	2.0	655	82	4	1575	39	9	8	41	1.68
15327909--15328709	181	4.5	179	75	10	682	41	9	7	40	1.67
15328063--15328747	350	2.0	349	80	6	798	43	9	7	39	1.66
15328762--15330027	181	7.0	180	76	8	858	41	9	8	40	1.67
15329070--15329118	18	2.9	16	81	9	53	44	6	4	44	1.47
15328911--15329951	354	2.9	357	79	6	1005	42	9	8	40	1.66
15330062--15330393	180	1.8	181	90	1	533	41	6	9	42	1.63
15330274--15330526	133	1.9	133	80	3	294	43	7	9	39	1.66
15330086--15330708	313	2.0	315	83	3	790	41	7	9	41	1.66
15330582--15333686	718	4.3	715	77	7	2120	40	8	9	41	1.68
15330395--15342248	717	16.5	713	72	10	5027	39	8	10	41	1.69
15332385--15332420	17	2.1	17	90	10	56	38	2	5	52	1.39
15330399--15337011	181	36.4	179	70	11	2539	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15333701--15334094	180	2.2	179	80	5	420	39	9	7	42	1.67
15335769--15336084	174	1.8	174	80	4	386	40	6	10	43	1.64
15333702--15342232	536	15.9	530	74	8	4766	39	8	10	41	1.69
15336019--15336981	355	2.7	354	78	8	894	40	7	9	41	1.67
15337004--15337082	36	2.2	37	88	2	124	45	13	7	32	1.72
15337107--15342249	355	14.4	352	73	9	1489	39	8	10	41	1.70
15340221--15340253	16	2.0	17	88	5	50	48	3	15	33	1.60
15340408--15340446	18	2.2	18	86	13	55	43	0	7	48	1.31
15337076--15340182	180	17.4	180	73	8	1727	38	8	10	42	1.70
15337107--15342252	181	28.8	179	73	8	3087	39	8	10	41	1.70
15342537--15342604	34	2.0	34	94	0	118	54	1	5	38	1.34
15342575--15352268	180	53.3	181	69	12	3252	41	10	8	39	1.69
15343090--15343569	169	2.8	170	78	9	450	41	10	8	39	1.69
15342575--15346703	361	11.5	359	75	7	2967	41	9	8	40	1.68
15347145--15347342	107	1.9	105	83	6	256	42	6	8	42	1.60
15347600--15347737	67	2.1	67	90	0	213	37	13	7	41	1.73
15347715--15355172	358	20.9	356	71	12	1346	41	10	8	39	1.70
15347686--15355579	361	22.1	355	72	11	3564	41	10	8	39	1.70
15352140--15352416	145	1.9	146	87	2	414	42	10	6	40	1.65
15352888--15352916	14	2.0	15	93	6	51	51	0	0	48	1.00
15351425--15353081	864	1.9	858	80	5	1885	40	9	8	40	1.69
15352285--15355579	181	18.3	175	73	10	1515	40	10	8	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15353312--15353697	174	2.2	176	79	6	397	41	10	9	37	1.73
15352302--15355385	537	5.7	536	76	9	2040	40	10	8	39	1.71
15356101--15356158	18	3.3	18	73	11	57	48	8	6	36	1.61
15356487--15358386	182	10.6	178	76	7	1191	41	8	9	40	1.67
15356678--15358391	538	3.2	542	76	9	1250	41	8	9	41	1.67
15356511--15361278	362	13.4	352	71	11	1478	39	8	9	41	1.69
15356630--15358371	361	4.8	361	75	8	1001	41	7	9	41	1.66
15358445--15360400	181	11.0	180	72	9	660	39	8	10	41	1.71
15359443--15360410	181	5.4	180	76	6	720	38	9	10	41	1.71
15360411--15361227	357	2.3	355	80	5	878	39	10	9	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100