genome.fa.s168.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  89  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15560159--15560662	180	2.8	177	76	6	478	40	10	9	39	1.73
15560654--15560883	121	1.9	121	82	3	293	34	13	8	43	1.74
15560515--15561063	302	1.8	302	83	2	726	38	10	8	41	1.70
15560783--15561195	181	2.3	182	77	2	420	40	10	9	39	1.72
15560976--15561532	301	1.9	301	80	3	672	40	11	7	41	1.68
15560518--15561742	482	2.5	481	86	2	1652	39	11	8	40	1.71
15561277--15562862	181	8.8	179	77	6	1426	41	10	7	40	1.68
15563090--15563124	17	2.1	16	89	5	52	62	11	2	22	1.41
15564708--15566106	181	7.8	181	76	8	1223	40	9	8	40	1.69
15564708--15574532	361	27.5	355	69	14	2473	41	9	8	40	1.69
15565947--15566220	145	1.9	146	87	6	405	43	9	6	40	1.63
15565830--15566426	326	1.8	325	83	4	790	42	9	8	39	1.69
15566157--15566761	180	3.4	177	78	8	609	40	9	9	40	1.69
15566810--15568197	181	7.7	181	74	7	979	41	10	8	39	1.70
15568307--15574532	180	34.7	180	74	9	3811	41	9	8	40	1.69
15570337--15571473	181	6.4	181	73	10	502	41	10	7	40	1.67
15571425--15571501	35	2.2	35	100	0	154	32	9	7	50	1.63
15571460--15574532	181	17.2	181	76	7	2361	41	9	8	40	1.69
15571460--15574532	358	8.6	354	75	9	2119	41	9	8	40	1.69
15572889--15572924	18	1.9	19	88	5	56	50	8	5	36	1.56
15573091--15573410	170	1.9	169	81	5	396	40	9	7	41	1.66
15574868--15574953	43	2.0	43	97	0	163	45	8	9	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15576078--15578224	181	12.0	179	76	7	1670	41	10	8	39	1.69
15576078--15580218	358	11.6	355	75	9	2716	42	10	8	39	1.69
15577061--15577093	18	1.9	17	88	11	50	39	6	6	48	1.53
15577234--15577285	18	2.9	18	75	13	63	38	5	7	48	1.56
15576078--15580218	719	5.8	711	75	9	2920	42	10	8	39	1.69
15578279--15580218	181	10.8	178	76	7	1373	42	10	8	39	1.69
15581931--15586115	180	23.4	179	72	10	1566	42	10	8	39	1.68
15582792--15586343	179	19.9	178	73	10	1965	42	10	7	39	1.68
15583254--15583289	18	1.9	19	88	5	56	44	8	5	41	1.58
15584154--15584193	18	2.4	17	91	8	64	45	5	2	47	1.38
15582744--15638115	719	76.7	715	69	13	12113	41	10	8	39	1.69
15583184--15586095	359	8.1	355	71	11	969	42	9	7	40	1.66
15586382--15594467	181	45.3	178	74	9	4726	41	10	8	39	1.69
15586388--15587269	180	4.9	180	77	8	564	41	9	9	40	1.69
15586382--15587303	360	2.6	358	78	7	932	41	9	9	39	1.70
15586988--15587591	322	1.9	324	82	4	761	42	10	8	38	1.70
15588038--15603609	362	43.5	360	74	8	10034	41	10	8	39	1.69
15589172--15589207	17	2.2	18	85	14	51	55	0	2	41	1.14
15587308--15659015	900	79.7	889	69	13	18727	41	10	8	39	1.69
15592446--15592497	18	2.9	19	77	13	65	38	11	5	44	1.65
15594440--15594495	16	3.4	16	68	18	51	35	14	3	46	1.62
15594435--15594500	34	1.9	34	100	0	132	39	15	3	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15594624--15597516	181	16.1	179	75	9	1996	41	10	8	40	1.68
15594623--15603629	535	16.8	529	73	11	2863	41	10	8	39	1.69
15594627--15603510	717	12.4	712	72	12	2297	41	10	8	39	1.69
15597518--15603628	181	34.1	181	73	9	3885	41	10	8	39	1.70
15597518--15603629	361	17.1	358	72	9	2564	41	10	8	39	1.70
15603816--15606391	180	14.3	180	76	7	1789	41	10	8	39	1.70
15606243--15606534	143	2.0	143	80	3	320	43	6	8	40	1.62
15606486--15607093	181	3.4	176	78	5	562	39	9	8	42	1.68
15606486--15607164	362	1.9	358	79	5	778	40	9	8	41	1.68
15606580--15607206	181	3.5	180	79	6	488	40	9	8	40	1.69
15607056--15607340	146	2.0	146	80	2	331	41	9	8	40	1.68
15607185--15612981	181	32.3	180	76	7	4187	41	9	8	40	1.69
15606503--15607841	689	1.9	685	82	4	1635	41	9	8	41	1.66
15606858--15607528	327	2.1	327	82	3	787	41	9	8	40	1.69
15607185--15626322	362	52.9	361	69	12	6697	41	9	8	40	1.69
15607185--15626307	361	53.4	356	70	12	7604	41	9	8	40	1.69
15612987--15613914	181	5.2	179	75	9	613	41	9	8	40	1.69
15613159--15613914	363	2.1	358	79	5	803	42	9	8	39	1.68
15613782--15613814	18	1.9	17	88	11	50	36	6	9	48	1.60
15613938--15614847	182	5.0	181	76	7	756	41	9	8	39	1.69
15614846--15618962	181	23.1	177	72	11	940	41	9	8	40	1.67
15616024--15616484	176	2.6	176	78	7	425	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15618471--15618510	18	2.4	17	87	8	55	45	7	2	45	1.45
15619016--15619322	164	1.9	165	82	6	399	41	10	6	40	1.66
15615995--15620325	181	24.3	177	73	10	2213	41	9	8	40	1.68
15620336--15626324	181	33.4	180	76	7	4251	41	10	8	39	1.69
15620336--15626316	538	11.1	534	76	8	4055	41	10	8	39	1.69
15625966--15626001	18	2.1	18	90	10	58	44	2	8	44	1.48
15625900--15626739	425	2.0	425	82	3	1030	43	9	7	39	1.67
15626321--15627330	361	2.8	357	79	5	1002	41	10	8	39	1.70
15626321--15627379	180	5.9	179	77	7	912	41	10	8	39	1.70
15627902--15627945	16	2.6	17	82	7	54	43	6	4	45	1.51
15627380--15629638	361	6.3	358	76	7	1784	40	10	8	40	1.69
15629769--15629931	82	2.0	81	96	1	299	52	7	6	33	1.55
15627383--15631594	361	11.6	356	69	14	1211	41	10	8	39	1.69
15627383--15631594	181	23.3	178	72	11	1856	41	10	8	39	1.69
15630099--15631594	541	2.8	531	80	6	1460	41	11	7	39	1.70
15632245--15634465	537	4.2	534	74	10	1462	40	10	8	39	1.70
15632882--15634547	180	9.3	180	73	10	929	40	10	8	40	1.69
15632264--15634461	180	12.4	177	71	12	773	40	10	8	39	1.70
15634589--15638118	541	6.5	537	77	7	2845	41	10	8	39	1.69
15636806--15637758	180	5.3	174	74	11	471	44	9	8	37	1.69
15634562--15638118	181	19.8	181	77	6	2766	41	10	8	39	1.69
15638423--15638456	9	3.9	9	84	7	52	76	2	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15639359--15639408	6	8.3	6	83	14	59	72	0	0	28	0.86
15640056--15641231	181	6.5	176	78	8	987	42	10	7	38	1.69
15640130--15646696	357	18.5	356	72	11	1458	41	9	8	40	1.69
15641216--15643633	181	13.5	182	72	9	1172	41	9	8	40	1.68
15641219--15647392	539	11.6	530	72	11	2386	41	9	8	40	1.68
15644006--15646788	180	15.5	179	76	7	1959	40	9	8	40	1.69
15644016--15646788	361	7.7	355	75	8	1943	40	9	8	40	1.69
15647791--15647920	67	2.0	67	93	1	226	35	13	6	43	1.71
15647955--15648872	181	5.1	178	75	9	659	41	10	8	40	1.69
15648403--15648448	20	2.3	20	82	10	60	23	6	10	58	1.55
15647912--15648872	358	2.7	356	78	6	840	41	10	8	39	1.69
15649012--15650745	182	9.6	179	73	9	1045	40	10	8	40	1.70
15649012--15650734	362	4.8	361	75	9	1194	40	10	8	40	1.70
15651665--15651700	18	1.9	19	88	5	56	47	5	8	38	1.57
15650736--15651855	179	6.2	179	76	7	858	41	8	7	41	1.65
15651371--15652827	508	2.9	499	80	7	1458	41	9	7	40	1.67
15652357--15655167	181	15.7	181	75	8	1989	41	10	8	39	1.70
15653565--15655128	180	8.7	177	72	10	479	41	10	8	39	1.70
15652360--15658886	716	9.2	701	73	10	3311	41	10	8	39	1.68
15652379--15655123	358	7.7	356	73	9	1733	41	10	8	39	1.70
15654936--15654988	23	2.3	21	73	17	52	56	1	1	39	1.21
15655035--15655314	148	1.9	147	86	0	398	45	10	6	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15655183--15659015	181	21.4	181	76	8	2699	41	9	7	40	1.67
15657706--15657743	20	1.9	20	84	10	51	28	5	13	52	1.61
15658951--15659082	67	2.0	67	82	10	166	36	11	7	44	1.69
15659071--15659994	180	5.2	179	74	9	557	42	9	7	40	1.65
15660335--15664107	181	20.9	179	75	7	2597	40	8	9	40	1.69
15660396--15663910	719	4.9	713	76	7	2607	40	8	9	40	1.70
15660412--15663855	900	3.8	891	76	6	2884	40	8	9	40	1.70
15660396--15664107	538	6.9	536	75	6	2778	40	8	9	40	1.69
15664027--15664185	78	2.0	78	100	0	318	35	6	7	50	1.56
15664157--15665263	181	6.1	181	76	7	801	39	8	10	41	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100