genome.fa.s168.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  16  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2917422--2917455	2	17.0	2	93	0	59	50	2	0	47	1.16
2919643--2919671	3	9.7	3	100	0	58	31	0	0	68	0.89
2920704--2920769	33	2.0	33	90	0	105	54	10	9	25	1.64
2926957--2927005	21	2.3	22	80	20	59	34	0	0	65	0.93
2938453--2938491	21	1.9	20	84	5	51	41	7	7	43	1.62
2939153--2939276	34	3.9	31	76	10	106	28	1	2	67	1.12
2939194--2939291	44	2.3	42	84	10	121	22	2	3	72	1.09
2939279--2939347	34	2.0	34	85	5	93	21	5	1	71	1.16
2939154--2939354	4	51.5	4	68	18	63	24	2	2	69	1.17
2940145--2940192	11	4.5	11	78	17	57	18	0	2	79	0.84
2940145--2940192	20	2.3	21	89	7	71	18	0	2	79	0.84
2940215--2940279	11	5.8	11	78	12	62	13	4	1	80	0.95
2940215--2940287	5	14.4	5	75	13	53	13	4	2	79	0.99
2940214--2940279	6	10.7	6	72	18	55	13	4	1	80	0.94
2940290--2940838	62	9.1	58	81	9	570	44	6	12	36	1.68
2940331--2940840	182	2.8	177	87	6	702	44	6	12	35	1.69
2940779--2940810	15	2.1	15	100	0	64	62	6	0	31	1.20
2951253--2951345	31	3.1	29	89	8	143	74	0	13	11	1.08
2951253--2951393	29	4.5	30	83	11	169	75	0	14	10	1.05
2951255--2951393	8	17.8	8	78	12	146	74	0	14	10	1.06
2952390--2952521	43	3.1	41	85	3	183	23	15	24	37	1.93
2952742--2952908	11	14.9	11	68	20	64	23	3	2	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2952815--2952910	4	24.0	4	72	23	60	25	1	1	72	0.97
2952813--2952940	16	7.6	17	70	20	83	26	2	1	69	1.09
2952813--2952862	21	2.4	21	80	6	57	32	2	0	66	1.03
2952855--2952908	6	9.3	6	76	15	60	16	0	1	81	0.78
2952819--2952908	23	3.7	24	75	16	78	24	1	1	73	0.97
2952987--2953020	13	2.4	14	90	9	52	17	0	2	79	0.86
2953864--2953936	6	11.7	6	73	13	58	12	5	2	79	1.01
2953863--2953947	13	6.8	12	71	24	52	12	4	3	78	1.03
2953981--2954225	63	3.9	63	84	6	259	46	6	10	36	1.63
2954201--2954232	15	2.1	15	100	0	64	62	0	0	37	0.95
2953947--2954260	63	5.1	59	77	10	258	46	6	9	37	1.61
2968784--2968832	8	6.0	8	77	13	55	55	2	0	42	1.11
2968791--2968838	25	1.9	25	87	8	71	50	2	0	47	1.12
2975843--2975902	30	2.0	30	100	0	120	33	13	6	46	1.69
2975843--2975891	17	3.1	17	71	28	54	32	12	6	48	1.65
2975852--2975902	17	3.2	17	68	21	56	35	15	5	43	1.71
2979455--2979533	29	2.7	29	77	15	90	49	1	0	49	1.09
2979514--2979545	12	2.8	12	86	13	50	43	0	0	56	0.99
2984091--2984130	20	2.0	20	100	0	80	40	0	0	60	0.97
2987093--2987218	64	2.0	64	98	0	243	26	19	17	35	1.94
2994647--2994700	17	3.1	18	84	10	67	14	1	0	83	0.73
2994649--2994715	7	9.7	7	76	10	59	13	1	1	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2994647--2994714	23	2.9	22	82	18	84	14	1	1	82	0.82
2994649--2994714	24	2.8	23	86	11	89	13	1	1	83	0.79
2994652--2994701	8	5.7	9	83	7	59	14	2	0	84	0.72
2997539--2997613	21	3.8	20	76	13	66	49	1	0	49	1.09
3002137--3002176	20	2.0	20	100	0	80	40	0	0	60	0.97
3005142--3005267	64	2.0	64	98	0	243	26	19	17	35	1.94
3012680--3012721	9	4.6	9	85	11	50	16	2	0	80	0.81
3012672--3012722	21	2.4	21	93	3	84	15	1	0	82	0.76
3012687--3012736	12	4.2	12	82	5	66	16	0	2	82	0.77
3015616--3015658	2	21.5	2	100	0	86	48	0	0	51	1.00
3020389--3020438	25	2.0	25	100	0	100	52	20	8	20	1.71
3026942--3027164	86	2.6	84	80	6	259	36	20	18	24	1.94
3027394--3027468	29	2.7	26	78	13	69	48	4	2	45	1.35
3027409--3027469	29	2.1	30	87	3	88	45	4	1	47	1.34
3031216--3031248	2	16.5	2	100	0	66	0	48	0	51	1.00
3033883--3033915	17	1.9	17	93	0	57	24	18	0	57	1.40
3035468--3035526	16	3.3	18	73	22	52	25	8	5	61	1.46
3049638--3049672	2	17.5	2	100	0	70	48	0	0	51	1.00
3056329--3056356	2	14.0	2	100	0	56	50	0	0	50	1.00
3062634--3062667	17	2.0	17	88	11	52	8	5	2	82	0.93
3065838--3065875	13	3.0	13	80	3	51	26	0	0	73	0.83
3068142--3068178	14	2.6	14	100	0	74	37	0	5	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3068992--3069034	17	2.6	16	75	7	50	53	4	0	41	1.21
3069241--3069265	12	2.1	12	100	0	50	52	0	0	48	1.00
3069724--3069777	18	2.9	18	78	5	54	70	3	1	24	1.13
3071244--3071287	24	1.9	24	86	9	65	43	0	2	54	1.12
3072226--3072264	7	5.7	7	93	3	62	87	2	0	10	0.65
3073079--3073113	16	2.2	16	100	0	70	40	11	11	37	1.77
3073264--3073306	17	2.4	18	92	3	70	69	0	2	27	1.00
3079337--3079376	16	2.5	16	91	0	62	42	17	2	37	1.63
3079346--3079395	25	2.0	25	96	0	91	44	14	0	42	1.44
3085421--3085523	53	2.0	52	94	1	179	25	19	9	45	1.80
3086282--3086312	16	1.9	16	100	0	62	45	19	0	35	1.51
3086633--3086668	15	2.4	15	95	0	63	55	8	8	27	1.58
3095287--3095311	3	8.3	3	100	0	50	32	0	0	68	0.90
3102636--3102876	22	10.9	22	73	2	126	36	6	8	48	1.59
3102673--3103136	44	10.4	44	68	9	197	37	8	6	46	1.60
3102620--3102796	66	2.7	63	80	8	167	37	6	7	47	1.59
3102672--3102861	66	2.9	66	80	3	195	37	6	8	46	1.61
3102898--3102978	22	3.7	22	83	6	92	43	8	2	45	1.48
3102959--3103042	22	3.8	22	78	10	91	28	9	5	55	1.55
3103142--3103235	21	4.1	24	71	20	67	40	7	2	50	1.43
3103164--3103384	22	10.0	22	68	9	128	37	12	3	47	1.57
3103337--3103974	317	2.0	318	97	0	1206	37	10	8	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3103947--3104072	22	5.7	22	75	1	83	38	6	8	46	1.60
3103947--3104077	44	3.0	44	80	3	131	36	6	8	48	1.60
3104269--3104335	19	3.6	19	73	15	59	34	4	5	55	1.45
3104401--3104465	22	3.0	21	78	8	60	36	1	9	52	1.43
3104423--3104519	22	4.4	21	70	7	59	36	6	8	49	1.58
3104521--3104562	22	1.9	22	85	0	57	38	4	0	57	1.20
3104599--3104711	22	5.1	22	76	4	75	37	9	2	50	1.49
3105138--3105189	22	2.3	22	77	9	52	61	3	0	34	1.14
3105307--3105382	34	2.1	34	83	11	89	46	0	7	46	1.32
3112834--3112876	9	4.5	10	80	11	54	32	0	0	67	0.91
3112834--3112876	19	2.3	19	91	0	68	32	0	0	67	0.91
3112865--3112917	24	2.3	23	81	12	63	62	0	0	37	0.96
3115323--3115349	3	9.0	3	100	0	54	33	0	0	66	0.92
3124266--3124296	15	2.1	15	93	0	53	29	0	9	61	1.28
3131328--3131509	93	2.0	93	87	0	265	34	17	18	29	1.94
3142280--3142631	184	1.9	185	93	0	607	32	13	12	42	1.81
3142898--3143253	186	1.9	185	97	0	667	31	14	13	40	1.85
3142127--3143363	622	2.0	618	95	1	2253	30	15	11	42	1.83
3145062--3145142	3	27.0	3	94	0	90	24	1	8	65	1.28
3145946--3146002	6	9.0	6	79	11	60	14	5	3	77	1.08
3145950--3146000	26	1.9	27	92	4	86	13	5	3	76	1.11
3152887--3152972	35	2.5	35	82	1	111	40	0	3	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3153630--3153671	15	2.6	17	82	14	54	50	0	0	50	1.00
3153962--3153998	18	2.2	18	85	9	51	40	0	5	54	1.24
3154678--3154723	23	2.0	23	87	4	67	76	0	19	4	0.96
3155924--3155978	26	2.1	26	93	0	92	47	5	1	45	1.36
3155919--3155967	26	2.0	23	88	8	62	46	6	2	44	1.39
3156069--3156108	2	20.0	2	94	0	71	52	0	0	47	1.00
3158051--3158107	24	2.5	21	72	13	51	43	3	0	52	1.18
3158453--3158489	11	3.4	11	88	0	56	0	8	2	89	0.58
3171396--3171424	2	14.5	2	100	0	58	48	0	0	51	1.00
3181166--3181224	24	2.4	25	86	5	77	47	13	3	35	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100