genome.fa.s168.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  29  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5327004--5327130	66	1.9	67	82	7	161	49	3	8	37	1.52
5326931--5327097	22	7.5	22	66	18	60	52	4	5	37	1.45
5327491--5327610	21	5.9	21	72	6	95	50	10	7	32	1.64
5332281--5332345	34	1.9	34	81	6	78	32	13	13	40	1.85
5337671--5337725	17	3.2	17	72	12	58	63	3	0	32	1.12
5337679--5337704	10	2.6	10	100	0	52	61	0	0	38	0.96
5337679--5337813	9	14.9	9	70	12	73	49	0	3	45	1.25
5337751--5337813	20	3.2	20	93	4	110	39	0	6	53	1.26
5338659--5338697	18	2.2	18	90	9	62	28	0	2	69	1.02
5343252--5343286	18	1.9	18	88	0	52	80	2	2	14	0.95
5343789--5343831	18	2.3	19	84	4	52	11	20	9	58	1.61
5344164--5344203	7	5.9	7	88	2	55	2	0	10	87	0.63
5344164--5344203	21	1.9	21	94	0	71	2	0	10	87	0.63
5344166--5344211	21	2.2	21	88	0	65	6	0	8	84	0.77
5344163--5344249	14	6.3	13	74	13	59	11	3	8	77	1.11
5344196--5344268	13	5.5	13	76	12	51	19	5	5	69	1.28
5344877--5344915	11	3.5	11	89	0	60	58	0	0	41	0.98
5344873--5345072	22	9.1	22	70	14	92	49	2	6	42	1.40
5344873--5345124	22	11.5	22	67	11	88	48	2	6	42	1.43
5345434--5345551	42	2.9	42	75	7	102	50	8	6	33	1.59
5345454--5345507	21	2.6	21	85	5	65	46	11	7	35	1.67
5346380--5346405	12	2.2	12	100	0	52	26	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5347924--5347975	18	2.9	18	74	8	52	55	1	3	38	1.29
5350235--5350318	34	2.5	34	78	3	89	38	14	9	38	1.78
5350309--5350373	33	2.0	33	85	11	89	41	7	12	38	1.71
5350656--5350694	2	19.5	2	89	0	60	51	0	2	46	1.14
5350985--5351048	32	2.0	32	87	0	92	10	12	1	75	1.13
5351197--5351249	26	2.0	26	100	0	106	56	3	22	16	1.56
5351277--5351392	58	2.0	58	88	3	171	41	12	19	26	1.87
5351389--5351433	18	2.4	18	77	3	54	53	35	6	4	1.47
5351411--5351554	74	1.9	74	85	0	198	50	19	7	22	1.72
5351635--5351673	20	2.0	20	85	5	53	46	28	0	25	1.53
5351627--5351690	31	2.1	31	91	5	103	46	28	0	25	1.53
5353407--5353454	24	2.0	24	100	0	96	37	12	8	41	1.73
5357476--5357564	27	3.3	27	76	7	101	34	42	5	16	1.72
5361033--5361073	15	2.7	15	88	0	55	56	4	36	2	1.34
5362073--5362100	13	2.2	13	100	0	56	57	0	0	42	0.99
5362179--5362210	15	2.2	15	94	5	57	40	0	0	59	0.97
5362217--5362288	25	2.9	26	86	12	98	51	1	1	45	1.18
5362260--5362307	16	3.0	16	75	9	53	50	4	0	45	1.21
5362430--5362479	18	2.9	18	88	11	70	42	0	0	58	0.98
5362435--5362555	28	4.5	27	76	20	121	42	0	0	56	1.05
5362392--5362522	66	1.9	68	89	7	205	45	0	0	54	0.99
5362527--5362573	18	2.7	18	87	6	62	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5362393--5362553	66	2.3	66	82	10	182	44	0	0	54	1.04
5362938--5362965	2	14.0	2	100	0	56	50	0	0	50	1.00
5367000--5367029	1	30.0	1	100	0	60	100	0	0	0	0.00
5373150--5373205	4	14.0	4	92	0	58	39	0	0	60	0.97
5383565--5383615	26	2.0	26	88	3	77	62	3	11	21	1.45
5386515--5386565	25	2.0	26	85	11	70	17	29	23	29	1.97
5386596--5386664	3	23.7	3	82	5	88	30	1	1	66	1.09
5387202--5387305	48	2.1	49	83	3	129	19	9	23	48	1.78
5387532--5387566	5	7.0	5	100	0	70	20	0	0	80	0.72
5387542--5387602	31	1.9	32	83	9	81	21	8	0	70	1.13
5397827--5397860	7	4.6	7	89	10	50	85	0	0	14	0.60
5397905--5397943	8	4.8	8	85	14	53	87	0	2	10	0.65
5397905--5397943	17	2.4	16	87	12	53	87	0	2	10	0.65
5397907--5397942	14	2.5	14	90	4	54	86	0	2	11	0.68
5398899--5399367	89	5.3	87	76	11	404	19	20	15	44	1.86
5398899--5399430	89	6.0	91	76	11	403	19	19	16	44	1.86
5398899--5399282	179	2.2	179	83	4	481	19	20	15	44	1.87
5399931--5400004	3	25.7	3	86	8	82	28	5	1	64	1.23
5400818--5400859	5	7.8	5	85	15	57	21	2	0	76	0.90
5400811--5400850	18	2.2	18	95	0	71	20	7	0	72	1.08
5400818--5400873	28	2.0	28	89	6	87	19	5	0	75	1.00
5402619--5402665	20	2.2	22	92	7	80	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5402661--5402722	16	3.8	16	82	6	79	69	1	0	29	0.98
5402659--5402729	17	4.3	16	80	5	79	67	1	0	30	0.99
5402659--5402730	33	2.1	35	92	5	121	66	1	0	31	1.00
5403668--5403728	31	2.0	30	90	3	95	50	8	3	37	1.48
5412976--5413029	28	1.9	28	85	7	74	55	7	18	18	1.65
5413641--5414733	187	5.8	187	84	3	1234	35	11	11	41	1.77
5414110--5414372	62	4.2	62	68	13	155	34	9	12	43	1.75
5413641--5414733	561	1.9	561	84	3	1446	35	11	11	41	1.77
5414634--5414827	100	1.9	101	85	6	268	34	10	6	48	1.63
5425230--5425255	7	3.7	7	100	0	52	53	15	0	30	1.42
5425735--5426056	104	3.0	103	77	12	355	44	9	9	36	1.70
5426697--5426739	21	2.0	21	95	0	77	27	13	2	55	1.51
5426705--5426750	21	2.2	21	84	0	56	28	13	4	54	1.57
5429729--5429759	12	2.6	12	89	0	53	83	0	16	0	0.64
5432020--5432076	16	3.4	17	75	18	57	22	1	1	73	1.02
5432653--5432886	103	2.2	104	84	8	296	45	10	7	36	1.67
5433422--5433713	95	3.1	95	96	2	557	26	26	17	29	1.97
5442614--5442645	2	16.0	2	93	0	55	50	3	0	46	1.17
5442845--5442929	21	4.0	21	79	8	93	36	7	10	45	1.66
5443280--5443416	22	6.2	22	78	1	105	39	7	8	45	1.61
5443344--5443469	66	1.9	65	80	7	148	38	4	10	46	1.59
5443359--5443420	11	5.6	11	70	0	52	37	3	9	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5443300--5443437	22	6.3	22	78	5	127	39	5	8	47	1.57
5443258--5443416	44	3.6	44	79	5	160	38	6	7	46	1.59
5443356--5443460	22	4.8	22	75	12	65	40	3	11	44	1.59
5443506--5443632	22	5.8	22	79	7	114	37	9	3	49	1.51
5443798--5443841	21	2.1	21	86	0	61	15	4	6	72	1.22
5443811--5443841	16	1.9	16	100	0	62	19	3	0	77	0.90
5443811--5443857	5	9.0	5	86	13	60	21	2	0	76	0.89
5443811--5443857	21	2.2	21	85	14	62	21	2	0	76	0.89
5444168--5444195	11	2.5	11	100	0	56	32	7	14	46	1.71
5460552--5460577	11	2.4	11	100	0	52	92	0	0	7	0.39
5461625--5461728	43	2.4	43	83	3	129	26	12	16	44	1.83
5461708--5461890	44	4.3	42	75	9	149	27	11	18	42	1.85
5461737--5461935	44	4.6	44	75	5	154	25	14	19	40	1.89
5462130--5462214	9	8.2	10	73	18	59	29	2	1	67	1.11
5462130--5462214	16	5.1	16	70	13	57	29	2	1	67	1.11
5462227--5462261	18	1.9	18	94	0	61	14	8	0	77	0.99
5462977--5463011	3	11.7	3	88	11	54	28	0	0	71	0.86
5462977--5463011	13	2.6	13	95	4	61	28	0	0	71	0.86
5463129--5463278	62	2.4	63	83	6	189	46	6	14	33	1.68
5467261--5467311	21	2.5	19	77	22	50	41	3	0	54	1.19
5469773--5469828	23	2.3	24	84	9	78	42	7	0	50	1.30
5473915--5473982	34	2.0	34	100	0	136	41	11	8	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5474516--5474551	14	2.6	14	90	0	54	8	8	11	72	1.29
5474554--5474591	18	2.1	18	85	14	51	7	2	7	81	0.96
5476847--5476899	21	2.5	21	74	17	56	18	26	13	41	1.87
5479312--5479336	12	2.1	12	100	0	50	32	16	8	44	1.76
5482719--5482855	71	1.9	70	89	1	211	47	19	6	26	1.74
5483619--5485230	357	4.5	356	85	2	2054	37	15	11	35	1.85
5494289--5494380	44	2.1	44	87	2	132	36	15	10	36	1.82
5507682--5507708	1	27.0	1	100	0	54	100	0	0	0	0.00
5513066--5513097	16	2.0	16	100	0	64	43	18	0	37	1.51
5522706--5522765	30	2.0	30	90	0	93	43	6	0	50	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100