genome.fa.s168.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  27  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5032448--5032544	18	5.4	18	71	14	74	38	0	2	59	1.09
5032566--5032598	16	2.1	16	94	0	57	42	3	3	51	1.32
5045642--5045673	2	16.0	2	100	0	64	50	0	0	50	1.00
5047054--5047100	20	2.3	20	85	7	69	0	25	0	74	0.82
5047095--5047172	10	7.2	10	71	23	52	0	43	1	55	1.08
5047099--5047181	21	3.6	25	75	24	76	0	45	1	53	1.08
5047085--5047169	44	1.9	44	84	13	113	0	41	1	57	1.06
5047116--5047211	21	4.2	22	78	17	83	0	50	0	50	1.00
5060544--5060581	2	19.0	2	88	0	58	50	2	0	47	1.15
5067436--5067479	23	1.9	23	85	0	61	47	4	4	43	1.44
5072871--5072898	2	14.0	2	100	0	56	50	0	0	50	1.00
5075307--5075332	7	3.7	7	100	0	52	11	0	0	88	0.52
5075890--5075920	2	15.5	2	100	0	62	51	0	0	48	1.00
5076970--5077000	7	4.4	7	100	0	62	74	0	0	25	0.82
5080813--5080842	7	4.4	7	91	8	53	73	0	0	26	0.84
5080803--5080861	16	3.7	16	71	15	50	71	0	3	25	1.02
5081324--5081376	15	3.5	15	77	10	54	67	1	1	28	1.11
5082919--5082963	15	2.9	15	87	9	56	53	0	0	46	1.00
5086649--5086734	43	2.0	43	90	4	138	43	3	13	39	1.62
5089772--5089818	13	3.5	13	77	11	58	27	2	0	70	0.99
5089765--5089824	28	2.1	28	93	0	102	35	1	0	63	1.05
5091587--5091623	16	2.2	17	86	13	51	18	2	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5091766--5091854	28	3.2	28	69	12	83	28	11	6	53	1.61
5093427--5093802	44	9.0	43	73	12	196	44	17	11	26	1.83
5093569--5093806	43	5.5	43	79	5	230	45	15	12	26	1.81
5093571--5093806	86	2.7	87	81	5	275	44	15	12	27	1.82
5098056--5098141	43	2.0	43	90	4	138	43	3	13	39	1.62
5099883--5099928	23	2.0	23	95	0	83	26	10	4	58	1.50
5101175--5101221	13	3.5	13	77	11	58	27	2	0	70	0.99
5101168--5101227	28	2.1	28	93	0	102	35	1	0	63	1.05
5102979--5103017	15	2.6	14	88	8	51	17	2	2	76	1.01
5103157--5103245	28	3.2	28	69	12	83	28	11	6	53	1.61
5104811--5105188	44	9.0	42	70	16	198	43	17	12	26	1.85
5104955--5105186	86	2.7	87	82	5	276	44	15	12	27	1.83
5104951--5105188	43	5.5	43	76	6	205	44	15	12	26	1.83
5107868--5107912	23	2.0	22	83	12	56	46	4	4	44	1.43
5108063--5108102	20	2.0	20	90	9	64	25	30	25	20	1.99
5108171--5108258	35	2.6	35	81	12	94	28	0	6	64	1.19
5108673--5108726	25	2.2	24	83	6	63	35	5	18	40	1.74
5108879--5108926	20	2.4	20	96	0	87	37	31	25	6	1.81
5109422--5109456	9	3.8	9	88	3	52	11	5	0	82	0.82
5109397--5109451	24	2.3	25	81	15	71	10	5	3	80	1.01
5109481--5109947	59	7.7	59	86	9	608	45	8	13	32	1.74
5111933--5112013	26	3.4	24	83	9	94	34	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5113393--5113538	52	2.8	52	85	2	177	25	23	8	42	1.82
5113852--5113910	24	2.4	25	86	5	77	16	37	10	35	1.83
5114446--5114602	52	3.0	52	83	5	192	28	21	7	43	1.78
5118266--5118311	23	2.0	23	95	0	83	26	10	4	58	1.50
5120570--5120628	27	2.1	28	93	3	102	35	1	0	62	1.05
5124222--5124605	44	9.1	43	74	11	235	42	16	12	27	1.85
5124330--5124392	32	2.0	30	90	6	99	47	14	7	30	1.72
5124360--5124602	43	5.7	42	77	8	229	44	13	12	29	1.81
5124366--5124602	86	2.7	87	81	5	295	44	13	13	29	1.81
5127231--5127507	58	4.7	56	78	11	254	38	15	6	40	1.72
5127526--5127609	6	14.0	6	76	18	70	78	2	3	15	0.99
5127533--5127604	5	14.6	5	77	13	62	80	1	2	15	0.89
5127532--5127604	25	3.0	23	80	18	78	80	1	2	15	0.89
5127526--5127614	24	3.7	24	78	14	85	77	3	3	15	1.03
5127635--5127660	3	8.7	3	100	0	52	69	0	0	30	0.89
5128129--5128173	20	2.1	21	84	8	56	57	17	0	24	1.40
5128418--5128533	48	2.4	47	84	11	148	57	1	4	36	1.28
5128418--5128534	24	5.0	23	74	15	87	58	1	4	35	1.28
5128427--5128547	20	5.3	20	72	26	82	58	1	4	35	1.27
5128423--5128550	48	2.9	43	81	16	145	59	1	3	35	1.25
5128489--5128547	10	5.8	10	77	2	55	61	0	3	35	1.13
5128495--5128561	20	3.4	20	85	2	91	62	1	2	32	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5132890--5132960	33	2.2	33	84	0	88	30	15	16	36	1.90
5133180--5133413	42	5.6	41	78	6	229	27	12	14	45	1.81
5133180--5133408	84	2.7	85	78	11	265	27	13	13	44	1.81
5133416--5133500	44	2.0	41	86	6	116	24	14	18	42	1.88
5134175--5134204	15	1.9	16	93	6	53	63	0	36	0	0.95
5135353--5135382	14	2.1	14	93	0	51	83	0	0	16	0.65
5137139--5137185	13	3.5	13	77	11	58	70	0	2	27	0.99
5137133--5137193	28	2.2	28	90	0	104	63	0	1	34	1.04
5137147--5137202	22	2.5	21	82	5	58	66	0	3	30	1.09
5139384--5139429	23	2.0	23	95	0	83	58	4	10	26	1.50
5143114--5143270	52	3.0	51	83	9	194	42	8	22	26	1.82
5143788--5143900	25	4.6	25	72	6	86	37	7	33	22	1.81
5144157--5144196	11	3.6	11	79	0	53	15	2	32	50	1.57
5144221--5144329	52	2.1	52	86	3	148	45	8	19	26	1.78
5148014--5148072	26	2.2	28	84	6	86	62	0	1	35	1.05
5151070--5151108	19	2.1	19	95	0	69	28	0	15	56	1.40
5152159--5152682	57	8.8	57	84	7	636	34	13	7	44	1.73
5152323--5152419	32	3.1	32	62	24	80	31	15	9	43	1.78
5152159--5152678	243	2.2	236	87	5	769	34	13	7	44	1.73
5152741--5152785	6	7.5	6	80	9	56	82	2	2	13	0.86
5152702--5152785	30	2.7	29	83	9	87	76	1	7	15	1.06
5153597--5153641	22	2.1	22	83	4	56	66	0	8	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153664--5153722	17	3.4	17	86	9	75	72	1	0	25	0.93
5153681--5153743	8	8.1	8	77	20	55	66	1	0	31	1.01
5153667--5153834	48	3.4	49	72	17	141	64	5	0	29	1.15
5153704--5153752	15	3.2	15	78	21	57	61	4	0	34	1.15
5153783--5153831	10	4.9	10	77	22	50	61	8	0	30	1.25
5153779--5153836	20	3.0	20	76	18	68	62	8	0	29	1.25
5159054--5159120	20	3.4	20	85	2	91	32	2	1	62	1.19
5159083--5159198	24	4.8	25	79	12	136	35	4	1	58	1.28
5159065--5159198	24	5.8	24	77	15	124	35	3	1	59	1.24
5159065--5159186	48	2.7	45	83	15	146	35	4	1	59	1.27
5159446--5159490	21	2.1	21	84	8	56	24	0	17	57	1.40
5159955--5159995	3	13.7	3	100	0	82	31	0	0	68	0.90
5160021--5160104	6	13.8	6	79	13	84	15	3	3	77	1.05
5160096--5160216	59	2.1	59	84	3	156	43	4	11	39	1.63
5160119--5160296	57	3.1	58	87	9	240	42	5	14	38	1.67
5163109--5163234	51	2.4	52	88	7	177	45	8	19	26	1.79
5163117--5163264	51	2.9	49	81	11	172	44	6	21	27	1.77
5164110--5164152	11	3.9	11	81	0	50	23	0	25	51	1.49
5164110--5164152	22	2.0	22	90	0	68	23	0	25	51	1.49
5164177--5164285	52	2.1	52	89	3	166	43	8	22	26	1.81
5164177--5164332	52	3.0	53	83	5	158	39	8	25	25	1.85
5165697--5165777	26	3.4	24	84	6	94	62	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5170156--5170395	43	5.6	43	81	3	259	27	12	15	45	1.82
5170365--5170427	32	2.0	30	90	6	99	31	7	14	46	1.73
5170404--5170522	44	2.7	44	78	11	129	23	15	17	43	1.87
5172103--5172191	28	3.2	28	67	17	67	55	6	10	28	1.59
5174132--5174178	13	3.5	13	77	11	58	70	0	2	27	0.99
5174126--5174186	28	2.2	28	90	0	104	63	0	1	34	1.04
5174140--5174195	22	2.5	21	82	5	58	66	0	3	30	1.09
5178155--5178236	43	1.9	43	87	5	121	42	13	3	40	1.62
5179543--5179593	2	25.5	2	100	0	102	50	0	49	0	1.00
5183909--5183935	14	1.9	14	100	0	54	74	0	0	25	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100