genome.fa.s168.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  70  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12485616--12485678	28	2.2	28	83	5	74	61	1	3	33	1.21
12485622--12485678	3	20.0	3	82	10	66	61	1	1	35	1.17
12486030--12486339	115	2.7	113	78	6	329	44	13	20	20	1.85
12497918--12497972	17	3.2	17	77	12	58	29	0	14	56	1.39
12497933--12497974	18	2.2	20	87	8	61	28	0	11	59	1.33
12498045--12498078	18	1.9	18	94	5	61	29	0	11	58	1.33
12498166--12498219	21	2.4	22	72	9	56	75	3	5	14	1.12
12499072--12499103	3	11.0	3	93	6	57	68	0	0	31	0.90
12499163--12499233	3	24.3	3	90	5	110	64	1	1	32	1.11
12499767--12499821	7	7.6	7	78	13	58	54	1	1	41	1.21
12499764--12499806	15	2.9	15	86	3	61	53	0	4	41	1.21
12499767--12499821	22	2.5	22	85	11	69	54	1	1	41	1.21
12500334--12500358	11	2.3	11	100	0	50	60	0	0	40	0.97
12500405--12500476	17	4.2	17	76	16	69	45	0	0	54	0.99
12500405--12500473	33	2.1	34	86	8	97	46	0	0	53	1.00
12500405--12500461	16	3.4	17	74	16	64	47	0	0	52	1.00
12501954--12502009	20	2.8	20	78	5	60	62	1	5	30	1.28
12502882--12502919	10	3.9	10	82	6	51	73	2	2	21	1.07
12503963--12504010	17	2.7	18	81	12	55	66	2	0	31	1.03
12503960--12504024	19	3.5	17	75	21	60	63	4	3	29	1.30
12504204--12504262	21	2.7	21	76	10	57	49	6	6	37	1.56
12504211--12504276	20	3.2	21	74	14	57	51	6	6	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12504686--12504737	16	3.1	16	81	10	59	65	0	3	30	1.10
12504246--12505009	217	3.5	218	76	7	598	54	5	8	32	1.52
12503506--12505220	926	1.9	919	80	6	2016	52	5	9	32	1.56
12506172--12506209	5	7.6	5	93	0	67	15	21	2	60	1.47
12506861--12506888	3	9.3	3	100	0	56	32	35	0	32	1.58
12512122--12512181	29	2.1	29	100	0	120	40	13	20	26	1.89
12512165--12512413	123	2.0	123	98	0	480	31	13	20	34	1.91
12513001--12513116	58	2.0	59	91	1	189	17	22	16	43	1.87
12523688--12523730	20	2.1	21	83	12	54	48	4	2	44	1.36
12524134--12524213	41	2.0	41	87	0	115	28	8	11	51	1.67
12525056--12525080	11	2.3	11	100	0	50	76	0	0	24	0.80
12526009--12526036	10	2.8	10	100	0	56	89	0	0	10	0.49
12526798--12526828	15	2.1	15	93	0	53	67	0	3	29	1.06
12526862--12527035	74	2.4	74	86	3	226	56	4	5	33	1.41
12527004--12527059	3	18.7	3	100	0	112	66	0	0	33	0.92
12534553--12534595	16	2.7	16	82	7	52	25	2	2	69	1.12
12534542--12534583	20	2.2	19	83	12	50	21	4	2	71	1.16
12536773--12536807	17	2.1	17	94	0	61	51	17	8	22	1.72
12539047--12539093	22	2.0	22	84	8	58	34	0	0	65	0.93
12540180--12540235	23	2.4	23	77	16	62	25	17	26	30	1.97
12546398--12546429	16	1.9	17	93	6	57	56	0	6	37	1.25
12547464--12547491	9	3.1	9	100	0	56	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12549912--12549946	16	2.2	16	94	0	61	31	14	11	42	1.81
12550494--12550547	25	2.2	25	80	6	67	20	9	18	51	1.73
12550185--12550980	401	2.0	401	96	0	1457	31	10	18	39	1.84
12550640--12551325	345	2.0	346	96	0	1257	30	10	19	39	1.85
12551240--12551293	25	2.2	25	80	6	67	20	9	18	51	1.73
12550239--12552069	746	2.5	745	96	0	3394	30	10	18	39	1.85
12551641--12551694	25	2.2	25	80	6	67	20	9	18	51	1.73
12551386--12552069	344	2.0	345	96	1	1253	30	10	19	39	1.85
12551975--12552038	25	2.6	25	80	4	69	25	7	18	48	1.75
12557652--12557701	13	4.1	13	75	12	52	30	0	2	68	1.01
12560500--12560558	24	2.4	25	88	8	93	30	13	10	45	1.76
12560510--12560558	24	2.0	24	100	0	98	30	16	8	44	1.76
12560558--12560615	26	2.1	27	81	12	66	15	3	5	75	1.11
12560576--12560624	19	2.7	18	81	6	62	18	2	4	75	1.06
12560845--12560881	18	2.1	18	90	5	58	35	2	2	59	1.26
12560930--12560962	15	2.1	16	88	5	50	81	0	0	18	0.68
12560930--12560974	16	3.1	15	84	12	58	80	0	0	20	0.72
12561187--12561216	14	2.1	14	93	6	51	0	0	20	80	0.72
12561187--12561216	5	6.2	5	92	7	53	0	0	20	80	0.72
12562081--12562176	43	2.2	44	85	5	126	40	12	11	35	1.79
12562232--12562487	124	2.1	123	82	3	309	39	12	12	35	1.82
12562386--12562648	114	2.3	113	85	7	336	36	13	14	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12564509--12564548	18	2.2	18	90	0	62	20	35	12	32	1.90
12567951--12568307	132	2.7	132	81	6	411	38	10	10	39	1.75
12570936--12570987	26	2.0	27	85	11	72	42	5	11	40	1.65
12571691--12571763	14	4.9	16	78	8	50	15	1	32	50	1.52
12571766--12571812	21	2.2	21	84	0	58	19	4	31	44	1.70
12571819--12571896	15	5.5	14	75	13	70	19	2	29	48	1.62
12571819--12571922	29	3.6	29	69	17	74	19	3	28	48	1.66
12571933--12572039	36	3.0	36	94	0	187	17	0	24	57	1.39
12573513--12573541	11	2.7	11	94	5	51	0	13	0	86	0.58
12574066--12574209	34	4.2	34	70	14	98	52	9	20	18	1.71
12574066--12574195	69	1.9	69	83	3	172	53	9	20	17	1.71
12574154--12574229	34	2.3	34	86	2	100	48	10	19	21	1.78
12574276--12574394	35	3.5	34	75	7	98	47	11	21	20	1.81
12574352--12574600	102	2.4	102	82	6	306	44	13	21	20	1.85
12574266--12574522	137	1.9	137	81	1	318	47	12	19	20	1.81
12574352--12574638	102	2.8	102	77	11	291	44	13	21	19	1.85
12574493--12574703	69	3.1	68	69	14	180	41	12	25	20	1.87
12574751--12574844	36	2.6	36	84	3	127	47	17	19	15	1.82
12574924--12575014	37	2.5	37	81	3	103	48	15	23	13	1.80
12574998--12575280	147	1.9	148	86	3	401	45	18	18	17	1.85
12575493--12575541	22	2.2	22	81	0	53	34	16	20	28	1.94
12591667--12591710	17	2.6	17	80	16	56	52	27	2	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12592614--12592807	104	1.8	106	81	6	243	49	6	6	38	1.53
12595286--12595322	18	2.1	19	85	10	51	67	0	5	27	1.12
12598805--12598961	52	3.0	52	85	7	194	26	23	8	41	1.83
12598988--12599027	11	3.6	11	79	0	53	50	20	0	30	1.49
12601662--12601743	31	2.6	31	75	12	87	51	4	6	37	1.48
12601889--12601919	14	2.2	14	94	0	53	45	3	0	51	1.17
12604684--12604727	22	2.0	22	95	0	79	22	15	18	43	1.88
12606094--12606131	11	3.2	12	82	14	51	26	0	2	71	1.00
12606563--12606613	26	1.9	27	84	4	68	76	11	1	9	1.10
12606563--12606613	27	1.9	26	84	11	68	76	11	1	9	1.10
12611676--12611713	16	2.3	17	86	4	51	21	0	5	73	1.02
12614974--12615033	27	2.2	28	82	8	70	46	1	1	50	1.21
12618223--12618514	43	6.9	43	83	3	351	44	18	13	23	1.85
12618216--12618492	83	3.3	83	83	5	356	44	18	12	24	1.85
12618240--12618577	126	2.6	126	84	3	408	43	18	13	24	1.86
12618222--12618624	43	9.5	41	77	8	170	43	18	13	25	1.86
12619222--12619269	21	2.3	21	85	3	71	35	12	6	45	1.67
12619670--12619854	63	2.9	63	95	0	325	29	23	9	37	1.86
12620542--12620613	17	4.5	16	74	20	62	5	11	0	83	0.80
12620560--12620584	13	1.9	13	100	0	50	0	12	0	88	0.53
12620542--12620588	23	2.0	24	83	4	60	4	12	0	82	0.80
12620538--12620614	33	2.3	33	85	12	104	5	11	0	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12620540--12620648	30	3.7	29	77	13	96	8	13	0	77	0.97
12620563--12620648	29	3.0	27	75	12	82	8	15	0	76	1.00
12622242--12622281	5	8.0	5	82	0	53	35	20	0	45	1.51
12623494--12623583	31	2.9	31	74	14	85	51	4	5	38	1.46
12623731--12623761	14	2.2	14	94	0	53	45	3	0	51	1.17
12625589--12625662	32	2.3	32	86	6	98	36	9	12	41	1.75
12626501--12626543	22	2.0	22	95	0	77	25	11	18	44	1.84
12628368--12628399	12	2.7	12	95	0	55	28	0	0	71	0.86
12630143--12630176	17	1.9	18	88	5	52	79	8	0	11	0.94
12631396--12631433	12	3.2	12	85	7	51	68	5	2	23	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100