genome.fa.s168.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  53  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9735033--9735078	15	3.2	15	84	9	60	4	23	0	71	1.03
9735033--9735084	13	3.6	14	84	12	61	3	23	0	73	1.00
9735108--9735161	28	1.9	28	85	14	76	1	16	3	77	1.00
9735226--9735258	8	3.7	9	88	12	50	0	15	0	84	0.61
9736983--9737025	19	2.3	19	95	0	77	34	9	9	46	1.68
9737111--9737151	5	8.2	5	83	0	55	14	2	0	82	0.76
9737115--9737149	15	2.3	15	95	0	61	14	2	0	82	0.77
9740329--9740411	31	2.7	31	84	3	105	31	19	14	34	1.92
9743135--9743165	14	2.2	14	100	0	62	41	0	6	51	1.27
9756798--9756825	13	2.2	13	100	0	56	42	28	7	21	1.79
9759097--9759130	10	3.2	10	84	15	50	41	0	0	58	0.98
9759370--9759469	15	6.6	16	67	22	56	51	1	1	47	1.14
9759348--9759434	47	1.9	44	81	11	104	47	1	1	50	1.16
9762603--9762744	52	2.7	52	80	8	164	28	21	6	43	1.77
9762785--9762811	11	2.5	11	100	0	54	55	25	0	18	1.43
9763060--9763108	25	2.0	25	87	0	71	22	34	6	36	1.79
9767364--9767502	65	2.2	64	87	5	192	41	7	7	43	1.61
9767383--9767572	65	2.9	62	78	11	168	40	7	8	43	1.64
9767572--9767809	119	2.0	119	86	4	329	40	5	14	39	1.68
9776539--9776619	39	2.1	39	100	0	162	39	18	4	37	1.72
9788856--9788928	27	2.8	26	79	8	76	61	5	1	31	1.27
9789105--9789234	16	7.9	16	65	19	54	27	3	3	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9789087--9789234	17	8.7	17	68	16	76	27	3	2	66	1.21
9789394--9789483	38	2.4	38	82	8	107	37	3	2	56	1.28
9789424--9789477	9	5.6	10	76	12	51	33	1	1	62	1.16
9791062--9791092	2	16.0	2	93	6	55	48	0	0	51	1.00
9794200--9794229	13	2.2	14	94	5	53	30	0	0	70	0.88
9794790--9794826	14	2.6	14	86	4	56	83	5	0	10	0.79
9795159--9795199	22	1.9	21	85	5	55	41	2	2	53	1.27
9796436--9796492	29	1.9	30	85	3	80	31	5	7	56	1.49
9803822--9803850	2	14.5	2	100	0	58	51	0	0	48	1.00
9805710--9805755	24	1.9	24	81	0	56	50	2	0	47	1.13
9816039--9816094	16	3.5	16	80	4	69	62	0	1	35	1.06
9816039--9816094	8	7.0	8	75	15	53	62	0	1	35	1.06
9816339--9816371	2	16.5	2	93	0	57	48	3	0	48	1.17
9817848--9817901	26	2.1	26	100	0	108	42	3	18	35	1.68
9819257--9819303	20	2.3	21	88	3	69	38	2	0	59	1.09
9819649--9819985	120	2.9	114	86	8	486	44	13	10	31	1.77
9821216--9821289	28	2.7	27	78	17	73	43	1	1	54	1.17
9830020--9830056	14	2.4	16	78	17	51	35	0	0	64	0.94
9830025--9830071	14	3.4	14	82	2	60	40	0	0	59	0.97
9830092--9830147	24	2.3	25	84	6	78	51	0	1	46	1.11
9834750--9834809	13	4.6	13	81	4	59	45	1	0	53	1.10
9840372--9840444	38	2.1	34	78	14	69	39	0	4	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9840420--9840462	22	2.0	20	86	8	59	51	0	6	41	1.29
9844609--9844681	15	4.7	15	70	9	56	21	0	24	53	1.46
9844815--9844888	14	5.2	14	75	3	58	21	0	27	51	1.48
9845274--9845328	29	1.9	28	92	3	92	23	1	1	72	1.04
9845271--9845332	29	2.4	24	72	25	63	24	1	1	72	1.02
9845371--9845408	15	2.6	15	91	4	60	34	0	5	60	1.19
9845590--9845631	18	2.2	20	87	8	61	76	0	0	23	0.79
9845590--9845633	20	2.2	20	84	8	54	77	0	0	22	0.77
9852963--9852994	16	1.9	17	93	6	57	43	0	3	53	1.16
9852964--9853052	40	2.3	40	79	13	96	52	1	2	43	1.20
9861018--9861058	8	4.8	8	85	14	55	73	0	0	26	0.84
9861018--9861053	18	1.9	19	94	5	65	72	0	0	27	0.85
9872679--9872722	19	2.3	19	88	4	61	54	0	0	45	0.99
9872679--9872746	20	3.3	20	80	10	75	58	0	0	41	0.98
9872695--9872781	41	2.2	39	81	8	95	60	0	0	39	0.97
9873056--9873100	16	2.9	14	87	12	54	44	2	0	53	1.13
9875236--9875300	24	2.5	28	69	23	70	49	0	0	50	1.00
9875245--9875313	31	2.2	30	80	12	77	52	0	0	47	1.00
9877438--9877533	48	2.0	47	93	2	165	28	20	12	38	1.89
9877628--9877672	7	6.7	7	82	7	58	55	0	2	42	1.12
9877628--9877673	20	2.3	20	92	0	74	56	0	2	41	1.11
9877639--9877672	13	2.5	14	90	4	52	55	0	2	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9879256--9879284	2	14.5	2	100	0	58	48	0	0	51	1.00
9884968--9885026	21	2.8	21	92	0	91	35	18	27	18	1.94
9886053--9886088	17	2.1	17	94	0	63	41	11	11	36	1.76
9887562--9887599	19	2.0	19	94	0	67	39	5	18	36	1.73
9889226--9889272	23	2.0	23	100	0	94	46	0	0	53	1.00
9889220--9889273	23	2.5	21	86	13	83	46	0	0	53	1.00
9889229--9889279	23	2.2	23	92	3	84	45	0	0	54	0.99
9890412--9890524	42	2.8	36	74	20	100	34	4	10	50	1.57
9890440--9890549	43	2.5	43	85	10	136	34	6	9	50	1.60
9898661--9898692	2	16.5	2	93	6	57	50	0	0	50	1.00
9901560--9901595	19	1.9	19	88	5	56	36	0	0	63	0.94
9901771--9901825	17	3.2	17	72	15	51	30	3	1	63	1.22
9901917--9901943	10	2.7	10	100	0	54	55	0	0	44	0.99
9902367--9902397	10	3.1	10	90	0	53	58	22	0	19	1.40
9902571--9902607	19	1.9	19	94	0	65	0	2	10	86	0.67
9913784--9913824	11	3.6	11	90	3	55	82	2	9	4	0.89
9914407--9914437	4	7.8	4	100	0	62	77	0	0	22	0.77
9915151--9915184	18	1.9	18	88	5	52	61	0	35	2	1.11
9921166--9921211	20	2.3	20	77	3	58	65	2	0	32	1.05
9924823--9925149	39	8.5	39	75	7	193	38	17	19	23	1.93
9925012--9925200	39	5.1	37	82	7	163	39	21	19	20	1.93
9925822--9925852	14	2.3	14	94	5	55	25	3	0	70	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9930045--9930768	360	2.0	360	91	2	1184	32	13	11	42	1.79
9933381--9933422	17	2.4	18	84	11	61	42	26	9	21	1.83
9936832--9936900	11	6.0	11	73	9	57	78	0	13	8	0.97
9937711--9937740	15	2.0	15	93	0	51	40	16	6	36	1.75
9938319--9938558	42	5.6	43	77	7	236	29	8	15	46	1.75
9938319--9938558	44	5.6	43	75	12	190	29	8	15	46	1.75
9938319--9938558	86	2.8	85	83	6	277	29	8	15	46	1.75
9938681--9938739	20	2.9	21	84	2	84	33	15	13	37	1.86
9939017--9939068	17	2.9	17	77	5	50	25	5	17	51	1.67
9939217--9939371	18	8.6	18	67	19	74	33	14	10	41	1.79
9939737--9939766	12	2.6	11	94	5	51	16	0	3	80	0.85
9942596--9942624	1	29.0	1	100	0	58	100	0	0	0	0.00
9944190--9944246	21	2.7	22	74	20	59	47	0	0	52	1.00
9944199--9944242	20	2.2	20	84	8	54	47	0	0	52	1.00
9944449--9944482	17	1.9	18	88	5	52	61	0	8	29	1.26
9945285--9945678	99	4.0	99	97	0	716	19	22	32	26	1.97
9952905--9952951	16	2.9	16	93	3	76	46	6	36	10	1.64
9954006--9954046	14	3.0	14	76	16	50	53	2	7	36	1.42
9954189--9954228	15	2.6	16	84	4	55	50	0	2	47	1.14
9954195--9954271	17	4.4	16	71	24	50	53	0	0	46	1.00
9954212--9954265	17	2.8	20	73	21	62	57	0	0	42	0.98
9954228--9954257	14	2.1	14	93	0	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9954217--9954274	20	3.1	19	72	20	50	53	0	0	46	1.00
9954300--9954437	18	7.4	18	71	19	70	40	1	2	55	1.21
9954312--9954437	23	5.4	23	72	13	96	42	1	1	54	1.19
9954353--9954430	13	5.8	13	71	16	61	43	1	1	53	1.16
9955705--9955744	20	2.0	20	90	5	62	57	0	0	42	0.98
9958364--9958408	21	2.2	21	96	4	83	64	6	4	24	1.37
9964056--9964090	18	2.0	17	88	5	52	42	0	0	57	0.99
9964062--9964105	17	2.4	18	81	11	54	45	2	0	52	1.13
9971557--9971723	83	2.0	83	95	0	298	32	14	22	29	1.94
9973681--9973821	29	4.7	30	80	5	126	42	2	0	53	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100