genome.fa.s168.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  82  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14612039--14612086	24	2.0	24	100	0	96	33	20	8	37	1.83
14612430--14612868	64	6.7	64	73	12	327	33	14	14	38	1.86
14612430--14612895	139	3.6	129	76	10	394	32	14	14	38	1.86
14612685--14612900	63	3.4	63	76	11	219	31	11	17	39	1.85
14612901--14613123	63	3.5	64	77	8	231	33	16	12	37	1.86
14612901--14613155	64	4.0	62	74	10	212	33	15	13	37	1.87
14617688--14617724	2	18.5	2	94	0	65	45	0	2	51	1.15
14620767--14620816	22	2.3	22	83	13	59	56	0	2	42	1.11
14621284--14621337	16	3.5	15	82	9	65	46	0	3	50	1.19
14621384--14621427	15	2.9	15	80	12	54	11	9	0	79	0.93
14621392--14621435	20	2.2	21	84	8	56	15	4	2	77	1.04
14621447--14621526	16	4.9	17	77	10	62	75	5	7	12	1.18
14621447--14621528	17	5.1	16	72	21	64	74	4	7	13	1.19
14627548--14627597	20	2.5	20	75	12	66	46	38	0	16	1.47
14627734--14627849	39	2.9	39	82	8	146	43	38	0	17	1.49
14627767--14627840	20	3.8	19	68	12	60	45	36	0	17	1.49
14633176--14633333	59	2.7	58	77	6	156	50	7	6	35	1.56
14633274--14633315	21	2.0	20	86	4	57	54	2	4	38	1.34
14633201--14633405	60	3.4	61	80	8	217	46	7	10	36	1.66
14633297--14633441	60	2.5	60	82	7	156	46	8	12	31	1.72
14634995--14635037	20	2.2	19	87	4	59	13	2	9	74	1.16
14639126--14639165	21	1.9	21	85	10	55	22	20	7	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14640414--14640456	20	2.2	20	83	8	52	13	4	0	81	0.84
14643784--14643817	14	2.4	14	80	0	50	82	5	0	11	0.83
14644991--14645255	130	2.0	133	90	2	419	44	16	7	30	1.76
14652192--14652244	23	2.3	23	78	12	56	69	0	5	24	1.09
14654247--14654350	9	10.8	9	69	20	50	58	5	1	33	1.33
14654257--14654349	31	3.1	32	80	9	97	61	5	2	31	1.30
14654283--14654381	11	9.5	11	73	14	68	60	4	3	32	1.30
14654279--14654350	19	3.7	20	71	14	60	63	5	1	29	1.25
14654317--14654391	10	7.6	9	75	18	51	58	2	4	34	1.31
14654317--14654392	21	3.8	20	79	6	73	59	2	3	34	1.30
14654562--14654607	10	4.6	10	86	7	67	47	0	0	52	1.00
14654562--14654602	11	3.9	11	90	9	68	53	0	0	46	1.00
14654936--14655001	10	6.4	10	78	5	60	31	3	9	56	1.46
14654936--14654994	31	1.9	31	82	6	75	28	3	10	57	1.48
14655009--14655034	11	2.4	11	100	0	52	26	0	7	65	1.20
14655004--14655063	30	2.0	29	87	3	84	36	1	5	56	1.31
14655447--14655500	7	8.1	7	76	15	53	46	0	0	53	1.00
14655449--14655496	18	2.6	19	83	6	64	45	0	0	54	0.99
14655554--14655627	29	2.7	27	78	14	80	41	5	2	50	1.39
14658706--14658748	20	2.2	20	83	8	52	13	4	0	81	0.84
14662070--14662103	14	2.4	14	80	0	50	82	5	0	11	0.83
14662863--14662892	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14663290--14663555	131	2.0	133	94	1	464	44	16	6	31	1.74
14669139--14669170	16	1.9	17	93	6	57	37	0	6	56	1.25
14669737--14669780	16	2.8	16	100	0	88	11	0	20	68	1.20
14670485--14670537	23	2.3	23	78	12	56	69	0	5	24	1.09
14672515--14672624	48	2.3	48	84	7	134	54	7	1	36	1.39
14672589--14672689	11	9.5	11	74	14	70	61	3	2	31	1.29
14672585--14672627	20	2.2	20	91	0	68	67	6	0	25	1.15
14672592--14672648	22	2.7	22	89	10	84	64	7	1	26	1.28
14672554--14672625	9	7.7	9	73	14	56	56	6	1	34	1.35
14672585--14672689	10	10.2	10	71	12	52	61	3	2	31	1.28
14672625--14672699	10	7.6	9	75	18	51	58	2	4	34	1.31
14672625--14672700	21	3.8	20	79	6	73	59	2	3	34	1.30
14672840--14672901	18	3.3	19	77	6	63	54	4	0	40	1.22
14672871--14672916	10	4.6	10	86	7	67	47	0	0	52	1.00
14672871--14672911	11	3.9	11	90	9	68	53	0	0	46	1.00
14672931--14673015	28	3.0	27	73	11	80	29	1	5	63	1.25
14673246--14673309	10	6.4	10	81	0	65	32	1	9	56	1.41
14673290--14673370	29	2.9	28	85	3	92	38	1	3	56	1.25
14673739--14673792	7	8.1	7	76	15	53	46	0	0	53	1.00
14673741--14673788	18	2.6	19	83	6	64	45	0	0	54	0.99
14673847--14673921	29	2.7	26	81	8	87	41	5	2	50	1.39
14682382--14682407	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14713257--14713324	35	1.9	35	84	0	91	33	11	16	38	1.85
14713669--14714176	265	1.9	266	92	0	856	36	15	12	35	1.85
14714687--14714727	15	2.6	16	88	3	57	70	0	24	4	1.06
14716440--14716954	239	2.1	238	85	4	678	33	15	13	37	1.87
14716440--14717013	239	2.4	238	82	6	653	33	15	14	36	1.88
14720359--14720549	80	2.4	80	82	3	242	40	25	7	26	1.82
14730476--14730891	134	3.1	134	80	2	451	39	19	11	29	1.86
14730493--14730890	133	3.0	133	80	2	406	39	19	12	28	1.87
14731526--14731571	14	3.4	14	78	6	58	26	2	13	58	1.46
14731963--14732023	32	1.9	32	96	0	113	59	1	3	36	1.24
14732072--14732519	72	6.3	71	76	11	290	43	5	11	39	1.63
14732460--14732565	52	2.0	54	88	3	162	40	5	15	38	1.70
14733674--14733745	28	2.5	30	72	22	73	52	0	4	43	1.20
14734073--14734105	2	16.5	2	93	0	57	48	0	3	48	1.17
14734358--14734422	23	3.0	22	78	10	62	70	3	1	24	1.10
14738254--14738292	17	2.4	16	86	4	51	66	7	2	23	1.30
14738270--14738503	59	3.9	59	74	7	179	47	7	10	34	1.66
14738499--14738539	15	2.7	15	88	0	64	73	2	2	21	1.07
14738575--14738766	77	2.5	78	79	5	228	50	5	7	36	1.55
14743534--14743579	10	4.7	10	78	5	58	56	0	2	41	1.11
14743534--14743604	29	2.4	29	95	2	124	52	0	2	45	1.15
14747939--14747996	18	3.0	20	76	19	61	29	0	1	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14748131--14748190	31	1.9	31	86	0	84	46	8	11	33	1.70
14759363--14759411	25	2.0	25	83	0	62	20	12	6	61	1.52
14762768--14762797	7	4.3	7	100	0	60	43	13	0	43	1.43
14764836--14764881	19	2.4	20	76	23	62	67	4	0	28	1.10
14776185--14776225	3	13.7	3	100	0	82	34	0	0	65	0.93
14780840--14780891	24	2.2	24	86	6	70	53	9	19	17	1.70
14781035--14781078	22	2.0	22	95	0	79	45	11	9	34	1.72
14784958--14785001	22	2.0	22	95	0	79	45	11	9	34	1.72
14793971--14794000	15	2.0	15	93	0	51	40	13	16	30	1.87
14802582--14802620	20	2.0	20	85	10	53	10	5	0	84	0.76
14812090--14813192	49	22.7	49	84	4	1394	29	11	24	34	1.90
14813359--14813409	5	10.0	5	81	12	50	82	11	3	1	0.89
14813362--14813429	21	3.1	22	76	12	59	82	10	4	2	0.92
14813362--14813433	36	2.0	36	83	5	92	81	9	5	2	0.94
14814410--14814462	27	2.0	25	85	7	70	32	43	20	3	1.70
14814959--14815016	16	3.6	16	79	9	64	46	27	6	18	1.75
14815145--14815426	141	2.0	141	96	0	519	39	11	15	34	1.83
14818696--14818746	25	2.0	25	81	7	59	33	0	9	56	1.32
14818758--14818808	2	25.5	2	91	0	75	49	5	0	45	1.26
14825758--14825793	14	2.6	14	86	4	56	66	0	11	22	1.22
14825818--14825920	52	2.0	53	84	9	140	62	3	3	30	1.31
14826331--14826380	21	2.5	20	80	3	55	56	4	6	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14826586--14826627	2	21.5	2	95	4	77	50	0	0	50	1.00
14828891--14828933	18	2.3	20	80	15	56	48	0	2	48	1.14
14829076--14829381	166	1.8	165	88	2	461	42	4	4	48	1.43
14829399--14829455	26	2.3	24	90	6	87	47	3	1	47	1.29
14829419--14829480	30	2.0	32	84	15	85	46	1	4	46	1.33
14829668--14829707	17	2.5	16	92	8	64	50	0	2	47	1.14
14829646--14829719	38	1.9	38	81	10	89	48	4	2	44	1.35
14830603--14830637	18	1.9	18	94	0	61	48	0	0	51	1.00
14830838--14830947	31	3.5	32	73	8	84	36	5	8	50	1.56
14830999--14831044	17	2.7	18	80	10	51	43	4	0	52	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100