genome.fa.s168.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  13  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2611802--2611836	2	17.5	2	87	0	52	45	0	5	48	1.26
2614371--2614403	15	2.1	16	88	5	50	66	0	0	33	0.92
2614347--2614402	29	1.9	29	82	7	69	62	1	1	33	1.16
2617881--2617918	20	1.9	20	88	0	58	78	15	0	5	0.91
2618499--2618555	30	1.9	30	92	7	98	56	1	8	33	1.41
2619382--2619492	8	13.4	8	75	11	89	51	20	0	27	1.54
2619363--2619479	25	4.7	25	71	11	71	47	23	1	27	1.61
2619412--2619492	17	4.8	17	80	8	94	48	22	1	28	1.58
2619356--2619492	50	2.7	49	81	7	150	50	21	1	27	1.57
2619614--2619650	16	2.3	16	90	0	56	48	27	0	24	1.51
2619614--2619674	16	3.9	15	78	8	50	45	27	0	26	1.54
2619661--2619725	29	2.2	28	83	5	76	52	27	1	18	1.54
2619661--2619746	29	3.0	28	79	3	73	51	25	2	20	1.60
2620989--2621022	15	2.3	15	90	5	52	26	11	0	61	1.30
2622734--2625811	510	6.0	510	93	3	4943	43	11	5	38	1.65
2630668--2630700	15	2.1	16	88	5	50	66	0	0	33	0.92
2630644--2630699	29	1.9	29	82	7	69	62	1	1	33	1.16
2634180--2634217	20	1.9	20	88	0	58	78	15	0	5	0.91
2635664--2635783	42	2.9	41	85	5	134	50	22	1	25	1.59
2635681--2635782	8	12.4	8	74	10	80	51	20	0	26	1.53
2635953--2636017	29	2.2	28	83	5	76	52	27	1	18	1.54
2635990--2636053	15	4.3	15	70	4	58	53	23	1	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2635953--2636038	29	3.0	28	79	3	73	51	25	2	20	1.60
2642868--2642933	28	2.3	29	84	10	82	77	4	12	6	1.10
2643107--2643176	29	2.5	28	90	4	113	30	15	20	34	1.93
2643300--2643373	28	2.7	27	91	2	94	28	21	14	35	1.93
2643381--2643437	28	2.1	27	83	3	69	29	19	21	29	1.97
2648482--2648525	2	22.0	2	85	0	61	50	0	6	43	1.29
2655680--2655834	47	3.3	47	88	3	238	36	22	12	27	1.91
2665381--2665435	22	2.5	22	90	0	83	40	7	5	47	1.54
2665248--2665518	149	1.8	147	80	6	323	35	10	5	48	1.61
2665572--2665650	22	3.5	22	77	14	81	40	13	2	43	1.58
2665988--2666825	436	1.9	429	86	4	1200	40	8	9	41	1.68
2668238--2668781	59	8.9	60	81	12	516	34	13	7	44	1.73
2668423--2668467	19	2.4	19	88	0	63	37	15	8	37	1.79
2668432--2668469	19	2.0	19	100	0	76	36	15	5	42	1.70
2668451--2668782	58	5.7	58	89	3	531	34	13	7	44	1.72
2668314--2668587	137	2.0	137	95	2	498	35	13	8	43	1.73
2668451--2668783	117	2.8	118	93	1	571	34	13	7	44	1.72
2668823--2668898	17	4.3	17	76	12	57	78	1	6	13	0.99
2668808--2668866	22	2.6	23	84	7	68	76	0	8	15	1.01
2668819--2668907	5	18.2	5	69	19	55	77	1	5	15	1.01
2668832--2668907	26	3.1	25	73	25	72	78	1	3	15	0.96
2668843--2668903	32	1.9	32	86	3	88	78	1	4	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2668819--2668898	37	2.2	37	82	12	103	78	1	6	13	0.99
2668832--2668899	21	3.2	21	78	15	61	79	1	4	14	0.96
2668919--2668972	23	2.4	22	82	14	58	81	5	3	9	0.97
2668916--2668966	27	1.9	27	88	4	77	80	3	3	11	0.98
2669833--2669907	31	2.4	31	82	6	89	64	2	9	24	1.36
2669897--2669935	17	2.2	18	90	4	62	76	2	0	20	0.90
2669918--2669980	25	2.8	23	80	17	62	65	3	0	31	1.09
2669866--2670052	8	24.6	8	69	11	63	65	4	1	28	1.21
2670213--2670283	25	2.8	26	78	20	62	15	5	7	71	1.26
2670238--2670294	25	2.3	24	85	11	80	17	1	5	75	1.07
2670574--2670599	12	2.2	12	100	0	52	23	0	7	69	1.14
2671164--2671357	57	3.4	56	87	8	239	47	6	8	36	1.61
2671283--2671422	70	2.0	70	83	6	176	47	7	7	36	1.62
2671369--2671541	60	2.8	60	84	6	233	48	6	12	32	1.67
2673894--2674002	51	2.1	51	82	1	128	40	5	6	47	1.52
2678694--2678850	52	3.0	52	87	1	208	26	26	8	39	1.84
2678875--2678914	11	3.6	11	86	0	62	52	32	0	15	1.43
2678875--2678917	22	2.0	22	100	0	86	48	32	0	18	1.48
2679791--2679947	52	3.0	52	86	1	199	26	26	7	39	1.83
2679972--2680011	11	3.6	11	86	0	62	52	32	0	15	1.43
2679972--2680014	22	2.0	22	100	0	86	48	32	0	18	1.48
2680255--2680356	50	2.0	50	83	3	125	21	37	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2680266--2680356	25	3.6	25	72	8	78	20	35	9	34	1.86
2680888--2681044	52	3.0	52	87	1	208	26	26	7	38	1.83
2681069--2681119	22	2.3	22	96	0	93	52	31	0	15	1.43
2681069--2681121	11	4.8	11	88	0	79	50	32	0	16	1.46
2682386--2682436	19	2.6	19	79	14	59	29	5	0	64	1.17
2682564--2682588	2	12.5	2	100	0	50	48	0	0	52	1.00
2684505--2684558	17	3.5	17	71	23	64	51	0	0	48	1.00
2684500--2684578	29	2.7	29	92	2	131	53	0	1	45	1.08
2684730--2684767	16	2.3	16	90	4	58	31	2	7	57	1.41
2684786--2684851	24	3.0	22	72	12	71	33	9	1	56	1.40
2684786--2684866	45	1.9	44	83	14	109	37	9	2	50	1.49
2686271--2686315	15	2.9	15	86	6	63	20	0	0	80	0.72
2686269--2686316	24	2.0	24	92	8	80	22	0	0	77	0.78
2686271--2686315	8	5.6	8	86	7	65	20	0	0	80	0.72
2687342--2687397	9	6.6	9	82	17	75	76	0	0	23	0.78
2687344--2687395	3	17.7	3	82	4	61	76	0	0	23	0.78
2687342--2687427	6	14.5	6	75	11	61	74	1	0	24	0.89
2687336--2687397	32	1.9	33	93	3	108	75	0	1	22	0.88
2687344--2687396	23	2.3	23	96	3	97	77	0	0	22	0.77
2687358--2687427	23	3.2	23	81	16	71	72	1	0	25	0.92
2687394--2687427	13	2.7	13	90	4	52	70	2	0	26	1.01
2687642--2687910	40	6.8	40	86	5	348	43	13	18	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2687661--2687910	81	3.1	78	86	6	331	42	13	19	24	1.87
2691241--2691316	5	14.6	5	79	20	61	18	2	3	75	1.08
2691311--2691434	14	9.0	14	69	19	73	31	6	0	61	1.27
2691311--2691443	68	2.0	66	82	5	160	32	6	0	60	1.26
2691358--2691449	42	2.2	42	86	3	123	32	6	0	60	1.22
2691304--2691451	67	2.2	69	79	8	169	31	5	0	62	1.22
2692275--2692321	22	2.1	22	81	14	53	29	0	6	63	1.19
2692337--2692372	5	6.8	5	87	12	54	19	0	0	80	0.71
2692389--2692603	60	3.7	59	80	9	228	46	6	12	35	1.66
2703009--2703062	23	2.5	21	85	11	81	83	0	7	9	0.82
2703004--2703047	17	2.5	17	92	3	70	79	0	9	11	0.93
2704051--2704342	43	6.8	43	76	10	233	25	14	19	40	1.90
2704040--2704342	44	7.1	42	77	10	201	26	14	20	39	1.90
2704040--2704331	86	3.4	85	77	11	276	25	14	19	40	1.89
2704525--2704593	5	14.4	5	73	22	51	18	1	2	76	0.98
2704524--2704743	4	56.2	4	71	16	76	27	4	1	66	1.20
2704525--2704604	7	13.2	6	75	18	53	20	1	2	76	0.97
2704568--2704741	40	4.1	41	76	15	151	29	4	1	64	1.21
2704574--2704726	55	2.8	53	79	13	152	30	4	1	63	1.23
2704656--2704733	3	23.3	3	81	17	84	33	3	0	62	1.13
2704579--2704741	21	8.0	21	82	11	80	30	4	1	63	1.23
2704663--2704772	14	7.9	14	74	22	72	33	6	0	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2704588--2704779	42	4.4	42	81	10	183	31	5	1	61	1.26
2704647--2704793	62	2.4	62	85	7	187	31	5	0	62	1.18
2704585--2704780	94	2.1	92	80	12	224	31	5	1	62	1.25
2705623--2705732	11	8.9	12	70	16	50	20	1	2	75	1.02
2705677--2705750	5	13.8	5	86	13	87	17	1	0	81	0.77
2705676--2705750	11	6.9	11	88	8	109	17	1	0	81	0.76
2705768--2705924	60	2.7	58	84	4	190	46	6	10	36	1.64
2714413--2714513	51	2.0	51	88	0	148	45	6	19	27	1.76
2715986--2716023	17	2.3	17	86	13	53	21	0	0	78	0.74
2716470--2716504	13	2.8	13	91	4	54	71	8	0	20	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100