genome.fa.s168.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  30  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5525012--5525049	19	2.0	19	89	0	58	65	5	0	28	1.14
5525103--5525232	50	2.6	49	80	7	145	42	7	11	38	1.70
5539360--5539544	101	1.8	101	86	0	271	32	14	16	36	1.89
5539610--5539689	40	2.0	40	100	0	160	37	12	15	35	1.85
5547626--5547702	21	3.8	20	70	21	61	67	1	1	29	1.07
5547677--5547702	10	2.6	10	100	0	52	73	0	0	26	0.84
5548689--5548733	21	2.1	21	83	0	54	28	2	2	66	1.15
5549039--5549084	19	2.6	18	80	10	58	67	2	0	30	1.03
5560286--5560312	2	13.5	2	100	0	54	51	0	0	48	1.00
5564463--5564526	27	2.3	27	91	2	101	40	4	10	43	1.61
5565982--5566007	2	13.0	2	100	0	52	50	0	0	50	1.00
5566781--5566840	32	1.9	30	86	6	84	41	0	0	58	0.98
5569386--5569423	20	1.9	19	89	5	58	44	2	2	50	1.30
5571706--5571764	27	2.2	27	87	0	82	62	0	1	35	1.05
5571762--5571806	21	2.1	20	84	12	54	51	0	0	48	1.00
5576312--5576367	28	2.0	28	100	0	112	14	10	21	53	1.70
5579775--5579799	2	12.5	2	100	0	50	52	0	0	48	1.00
5580010--5580037	2	14.0	2	100	0	56	50	0	0	50	1.00
5583055--5583079	8	3.1	8	100	0	50	12	0	12	76	1.04
5583569--5583609	16	2.4	17	84	12	57	48	14	12	24	1.78
5583691--5583723	8	4.0	8	92	7	57	12	0	0	87	0.53
5583692--5583724	9	3.8	9	92	8	59	9	0	0	90	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5583691--5583724	17	2.0	17	100	0	68	11	0	0	88	0.52
5583792--5583848	26	2.2	26	83	3	69	42	5	3	49	1.42
5583799--5583852	26	2.1	26	89	0	81	46	3	1	48	1.30
5583815--5583862	25	1.9	25	83	8	62	43	6	2	47	1.40
5586373--5586410	2	19.0	2	94	0	67	47	0	2	50	1.15
5586483--5586511	2	14.5	2	100	0	58	48	0	0	51	1.00
5597194--5597242	24	2.0	26	88	8	75	20	18	8	53	1.70
5598127--5598156	15	2.0	15	100	0	60	53	0	20	26	1.46
5603581--5603623	17	2.6	17	88	3	61	60	2	2	34	1.22
5605204--5605240	2	19.0	2	94	5	67	48	0	0	51	1.00
5605777--5605807	15	2.0	16	93	6	55	70	0	0	29	0.87
5605782--5605818	18	2.1	18	90	5	58	72	0	0	27	0.84
5605983--5606035	20	2.6	21	77	16	58	45	1	7	45	1.42
5611400--5611472	37	2.0	36	89	2	110	54	0	2	42	1.14
5611431--5611503	23	3.2	23	71	7	76	54	0	1	43	1.08
5611400--5611502	13	7.5	13	67	21	59	54	0	1	43	1.11
5611436--5611524	46	1.9	46	95	0	160	53	1	2	42	1.20
5611435--5611538	46	2.4	43	81	12	115	52	0	1	44	1.18
5615369--5615403	2	17.5	2	93	0	61	2	0	51	45	1.16
5615403--5615434	2	16.0	2	100	0	64	50	0	50	0	1.00
5616096--5616363	132	2.0	132	100	0	536	25	13	18	43	1.86
5622940--5622964	13	1.9	13	100	0	50	48	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5622939--5622984	15	3.2	14	82	11	58	52	2	2	43	1.25
5623700--5623782	38	2.1	40	84	8	109	42	2	1	54	1.21
5623898--5623943	24	2.0	24	86	4	67	23	13	15	47	1.80
5624071--5624116	24	1.9	24	86	8	67	67	4	6	21	1.32
5624070--5624126	23	2.4	24	77	14	64	68	3	7	21	1.29
5632637--5632750	36	3.2	34	73	17	99	26	11	6	56	1.58
5632637--5632789	72	2.1	70	79	7	155	25	12	7	54	1.62
5632780--5632817	20	1.9	20	94	0	67	39	0	15	44	1.47
5632812--5633048	36	6.7	34	74	13	160	27	16	9	46	1.78
5632900--5633056	71	2.2	71	79	1	161	24	17	9	48	1.77
5636034--5636065	3	10.7	3	100	0	64	65	0	0	34	0.93
5641543--5641599	25	2.4	24	77	11	64	35	1	1	61	1.17
5642289--5642317	4	7.2	4	100	0	58	48	0	0	51	1.00
5646316--5646385	24	3.0	23	80	14	72	57	0	0	42	0.99
5647123--5647164	12	3.3	12	84	12	57	64	0	2	33	1.07
5647143--5647216	36	2.0	37	82	15	91	62	2	0	35	1.10
5649823--5649863	20	2.0	20	86	9	57	70	0	0	29	0.87
5649983--5650047	22	2.9	23	79	9	71	40	0	1	58	1.07
5650684--5650724	21	2.0	21	90	0	64	19	9	9	60	1.55
5659701--5659803	22	4.9	22	69	15	74	46	1	9	41	1.48
5659861--5659935	22	3.4	22	88	3	107	52	0	5	42	1.24
5659875--5659935	11	5.5	11	78	2	50	52	0	4	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659898--5659976	41	1.9	41	84	0	104	44	1	12	41	1.50
5660011--5660071	11	5.5	11	71	7	52	50	3	4	40	1.40
5659999--5660160	22	7.4	22	75	6	78	51	6	3	38	1.46
5660011--5660160	44	3.4	43	77	6	131	51	6	3	38	1.45
5661729--5661768	2	20.0	2	100	0	80	50	0	0	50	1.00
5663054--5663086	17	2.0	17	88	5	50	48	9	12	30	1.71
5663342--5663381	17	2.4	17	84	12	55	15	2	30	52	1.55
5664900--5664948	21	2.3	20	83	10	62	57	0	0	42	0.99
5670739--5670780	16	2.9	15	83	16	54	64	2	0	33	1.07
5673267--5673300	17	2.0	17	94	0	59	61	5	2	29	1.34
5676609--5676645	19	1.9	19	100	0	74	43	0	13	43	1.44
5676939--5677003	32	2.0	33	85	8	89	49	3	3	44	1.33
5677723--5677757	17	2.1	17	94	0	61	34	0	14	51	1.42
5684328--5684377	16	3.2	16	72	13	50	56	0	0	44	0.99
5685209--5685277	33	2.1	33	88	0	102	43	5	4	46	1.47
5685234--5685346	55	2.1	54	84	1	145	38	6	7	47	1.56
5687962--5687988	2	13.5	2	100	0	54	51	0	0	48	1.00
5688158--5688188	2	15.5	2	100	0	62	51	0	0	48	1.00
5690057--5690089	12	2.8	12	86	4	50	60	6	9	24	1.49
5691449--5691488	21	2.0	20	85	5	53	60	5	2	32	1.32
5693710--5693738	3	9.7	3	100	0	58	0	0	68	31	0.89
5693752--5693779	14	2.0	14	100	0	56	50	7	14	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5707295--5707332	20	1.9	20	100	0	76	26	26	21	26	1.99
5713833--5713877	22	2.0	22	100	0	90	31	13	20	35	1.91
5713892--5713924	11	3.0	11	95	0	57	0	39	0	60	0.97
5716754--5716807	27	2.0	27	81	0	63	37	1	0	61	1.07
5716851--5716883	17	2.1	17	88	11	52	48	0	0	51	1.00
5720893--5721021	63	2.0	63	89	0	195	37	10	33	19	1.85
5721011--5721143	63	2.1	63	84	2	178	21	15	37	24	1.93
5722544--5722568	13	1.9	13	100	0	50	76	8	0	16	1.02
5726582--5726634	22	2.4	22	93	6	90	50	0	0	49	1.00
5726852--5726916	29	2.3	28	75	17	71	61	1	0	36	1.05
5727155--5727188	18	1.9	18	88	5	52	38	0	38	23	1.55
5727408--5727447	21	1.9	21	85	10	55	60	0	17	22	1.37
5728863--5728893	12	2.6	12	100	0	62	0	41	0	58	0.98
5729600--5729647	17	2.9	15	84	12	51	18	0	2	79	0.84
5729598--5729647	23	2.2	23	89	7	75	18	0	2	80	0.82
5729598--5729647	6	8.7	6	82	12	61	18	0	2	80	0.82
5729676--5729899	4	57.2	4	67	14	87	26	3	3	67	1.20
5729670--5729776	45	2.4	45	84	9	130	28	3	3	64	1.28
5729769--5729820	26	2.1	25	82	13	63	30	1	1	65	1.14
5729789--5729831	21	2.0	21	90	0	68	27	0	0	72	0.85
5729803--5729889	41	2.1	42	87	8	126	22	3	2	71	1.13
5729890--5729939	19	2.5	20	90	6	84	12	8	8	72	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5729848--5729948	52	1.9	53	82	8	125	14	5	4	74	1.18
5730817--5730893	5	14.8	5	77	17	61	12	5	2	79	1.01
5730817--5730893	6	13.5	6	70	15	56	12	5	2	79	1.01
5730816--5730897	17	5.2	16	75	16	75	12	7	2	78	1.06
5730824--5730893	11	6.8	10	72	16	54	12	4	2	80	0.98
5730824--5730898	27	2.6	28	75	18	75	13	5	2	78	1.02
5731065--5731097	16	2.0	17	88	5	50	51	3	0	45	1.16
5730911--5731603	177	3.9	179	84	6	876	45	6	11	36	1.66
5730911--5731574	355	1.9	354	89	2	1037	45	6	10	36	1.66
5730911--5731601	60	11.7	58	82	7	761	45	6	11	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100