genome.fa.s168.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  56  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10275627--10275698	4	17.2	4	76	11	56	4	19	0	76	0.95
10275672--10275712	17	2.5	17	84	11	50	2	29	0	68	1.03
10276262--10276291	15	1.9	16	93	6	53	6	3	16	73	1.18
10281934--10282198	139	1.9	140	85	3	374	39	18	9	33	1.82
10284666--10284706	21	2.0	21	90	0	64	58	12	7	21	1.58
10286339--10286459	63	2.0	59	84	9	154	47	8	3	40	1.50
10296760--10296830	21	3.2	21	69	21	63	36	5	9	47	1.60
10300056--10300505	221	2.0	222	93	0	776	37	14	12	35	1.83
10302806--10303452	347	1.9	346	88	3	996	37	10	8	43	1.69
10303417--10303525	52	2.1	51	81	8	123	38	10	8	43	1.68
10303903--10303937	3	11.7	3	100	0	70	34	0	0	65	0.93
10303965--10304004	12	3.3	12	80	13	55	82	2	2	12	0.87
10304878--10304951	30	2.5	28	79	16	80	72	4	14	8	1.22
10305107--10305209	42	2.4	41	79	10	93	42	18	9	29	1.82
10305479--10305574	32	3.0	32	81	1	102	33	20	17	28	1.96
10305505--10305631	32	3.6	36	79	10	129	34	16	21	27	1.95
10317488--10317516	10	2.7	11	94	5	51	55	0	0	44	0.99
10317887--10317918	3	10.7	3	100	0	64	31	0	0	68	0.90
10318268--10318310	20	2.1	20	82	4	50	34	16	16	32	1.91
10318927--10318961	3	11.7	3	100	0	70	65	0	0	34	0.93
10320760--10320857	39	2.5	39	81	4	117	40	14	6	38	1.71
10327649--10327687	15	2.4	16	83	12	53	69	5	0	25	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10329273--10329303	14	2.2	14	94	0	53	12	0	3	83	0.75
10330809--10330851	22	2.0	22	90	9	70	46	11	9	32	1.72
10333914--10333982	22	3.4	22	62	25	60	23	31	8	36	1.85
10333904--10333978	39	1.9	39	97	0	141	25	26	10	37	1.89
10334909--10334952	22	2.0	22	90	0	70	43	13	9	34	1.76
10335508--10335537	2	15.0	2	100	0	60	0	50	0	50	1.00
10336816--10336858	3	14.3	3	100	0	86	67	0	0	32	0.91
10343096--10343120	13	1.9	13	100	0	50	28	24	8	40	1.83
10349307--10349371	32	2.0	33	93	3	114	55	0	13	30	1.39
10358172--10358742	289	2.0	288	93	0	989	25	16	17	40	1.90
10360453--10360502	17	3.0	16	82	8	64	54	0	2	44	1.11
10370424--10370453	15	1.9	16	93	6	53	16	0	3	80	0.85
10371615--10371662	20	2.5	18	83	12	60	37	2	0	60	1.09
10371611--10371663	21	2.5	20	87	6	70	37	1	0	60	1.08
10375485--10375534	17	3.0	16	78	18	57	56	0	2	42	1.11
10376945--10377005	24	2.5	24	84	12	72	32	3	1	62	1.21
10377639--10377683	23	2.0	23	86	8	65	48	2	0	48	1.13
10378756--10378834	18	4.6	17	76	18	60	54	1	1	43	1.16
10378791--10378834	18	2.4	19	88	7	65	59	0	0	40	0.98
10379139--10379217	41	1.9	41	82	5	97	46	2	2	48	1.29
10379624--10379664	21	2.0	20	86	9	57	51	0	0	48	1.00
10380353--10380523	87	1.9	88	83	6	222	28	12	9	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10381209--10381264	29	1.9	29	82	13	71	58	19	1	19	1.48
10391530--10391557	2	14.0	2	100	0	56	50	0	0	50	1.00
10392433--10392493	30	2.0	30	84	6	79	54	1	8	36	1.40
10394563--10394701	66	2.1	66	81	7	167	45	6	27	20	1.76
10400452--10400503	21	2.4	22	83	3	61	50	5	1	42	1.37
10400470--10400512	21	2.0	21	82	8	52	46	9	2	41	1.48
10406223--10406273	11	4.7	11	76	13	52	70	0	1	27	0.98
10411007--10411258	112	2.2	110	89	4	387	39	4	17	38	1.70
10411185--10411369	86	2.2	86	82	9	218	34	2	16	46	1.61
10411268--10411432	87	1.9	86	81	3	197	32	3	18	46	1.64
10411422--10411481	26	2.3	26	82	5	77	40	1	20	38	1.62
10411802--10411859	25	2.3	26	87	3	82	36	3	20	39	1.70
10411522--10412447	470	2.0	471	83	4	1184	37	5	17	38	1.74
10412276--10412326	25	2.0	26	84	3	68	35	1	19	43	1.63
10412235--10412392	83	1.9	87	84	9	218	36	2	17	43	1.63
10413325--10413360	18	2.1	18	89	5	56	52	0	0	47	1.00
10419764--10419825	31	2.0	31	83	0	79	51	4	3	40	1.39
10419981--10420126	71	2.1	71	89	2	222	33	23	17	24	1.96
10421180--10421220	17	2.3	18	87	8	57	29	0	12	58	1.34
10421653--10421735	31	2.7	31	76	0	85	45	22	6	25	1.75
10422237--10422266	3	10.0	3	100	0	60	66	0	0	33	0.92
10422240--10422315	13	5.5	14	73	12	59	55	3	2	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10422463--10422735	120	2.3	120	78	3	282	43	14	22	19	1.87
10422897--10423070	86	2.0	85	83	3	215	37	11	16	34	1.84
10423217--10423262	18	2.6	18	96	0	83	39	15	13	32	1.85
10428861--10428903	19	2.3	19	92	4	70	79	2	0	18	0.85
10429118--10429159	21	2.0	20	82	17	50	33	11	14	40	1.82
10429667--10429721	27	2.0	27	85	0	74	70	3	3	21	1.18
10429669--10429725	3	19.0	3	75	0	51	68	3	3	24	1.21
10429779--10429823	5	9.0	5	90	0	63	53	6	0	40	1.27
10433907--10434021	54	2.1	54	98	1	223	43	10	21	24	1.84
10434201--10434234	2	17.0	2	100	0	68	0	50	0	50	1.00
10434959--10435019	22	2.8	22	82	7	70	78	3	1	16	0.96
10434980--10435075	11	8.5	11	69	16	54	75	6	2	16	1.11
10435040--10435073	14	2.5	13	86	9	50	82	8	2	5	0.93
10435368--10435397	16	1.9	16	93	6	53	90	10	0	0	0.47
10435477--10435520	22	2.0	22	82	8	54	72	6	6	13	1.25
10435898--10435935	20	1.9	20	88	0	58	18	47	23	10	1.79
10436261--10436672	221	1.9	219	81	9	500	48	6	11	34	1.64
10438088--10438112	8	3.1	8	100	0	50	12	0	0	88	0.53
10438346--10438384	12	3.2	12	88	0	60	58	0	0	41	0.98
10438346--10438384	3	13.0	3	83	0	51	58	0	0	41	0.98
10439409--10439433	9	2.8	9	100	0	50	8	0	0	92	0.40
10441277--10441307	15	2.1	15	100	0	62	25	0	41	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10444533--10444577	12	3.8	12	81	18	51	86	11	2	0	0.65
10444533--10444578	18	2.7	17	83	9	67	86	10	2	0	0.64
10445147--10445191	12	3.6	12	80	11	54	84	4	0	11	0.76
10447153--10447217	22	3.0	22	77	8	78	32	27	13	26	1.94
10447153--10447246	44	2.1	44	84	3	118	31	26	13	27	1.94
10447370--10447434	22	2.9	23	81	6	80	29	20	18	32	1.96
10447385--10447622	110	2.2	110	84	3	300	24	21	15	38	1.92
10447409--10448019	198	3.1	196	83	3	735	22	20	17	39	1.92
10447612--10447817	110	1.9	110	87	2	306	22	19	17	40	1.92
10447716--10447919	88	2.3	88	81	4	234	20	18	18	42	1.90
10447891--10448146	133	1.9	133	86	1	361	24	20	17	37	1.93
10448002--10448068	23	3.0	22	80	6	80	23	22	20	32	1.98
10447803--10448537	243	3.0	243	81	3	829	23	20	17	38	1.93
10448024--10448282	110	2.3	109	79	3	284	24	20	15	38	1.92
10448247--10448301	23	2.5	22	85	5	74	29	21	18	30	1.97
10448154--10448413	133	2.0	132	84	5	346	23	19	17	39	1.92
10448494--10448536	22	2.0	22	85	0	59	27	23	18	30	1.98
10448267--10448596	110	3.0	109	81	6	360	22	20	18	39	1.93
10448692--10448903	102	2.1	102	81	1	255	22	19	11	46	1.82
10448752--10449059	171	1.8	171	87	4	460	21	19	12	46	1.82
10448928--10449190	34	7.6	34	68	11	133	21	18	12	47	1.81
10448918--10449358	105	4.2	105	88	1	591	21	18	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10448918--10449358	213	2.1	207	87	2	621	21	18	12	46	1.82
10449290--10449437	68	2.1	68	87	6	208	25	16	10	47	1.79
10449262--10449437	71	2.5	69	81	6	221	23	17	12	46	1.82
10449160--10449504	173	2.0	177	84	3	464	22	17	13	46	1.82
10449878--10449907	12	2.5	12	88	0	51	53	0	0	46	1.00
10452530--10452905	183	2.1	183	95	0	671	40	11	8	39	1.72
10452891--10452917	2	13.5	2	100	0	54	51	0	0	48	1.00
10455623--10455656	17	2.0	17	88	0	50	29	0	20	50	1.49
10456567--10456604	19	2.0	20	89	5	60	15	5	0	78	0.91
10460666--10460693	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100