genome.fa.s168.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  75  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13477545--13477578	18	1.9	17	88	5	50	32	0	0	67	0.91
13477619--13477680	31	2.0	31	90	6	99	53	3	0	43	1.17
13477612--13477674	23	2.7	24	73	9	58	49	3	0	47	1.17
13488669--13488709	20	2.0	20	95	0	73	31	9	36	21	1.86
13502504--13502543	20	2.0	20	95	0	71	25	22	15	37	1.93
13503199--13503242	23	2.0	22	86	4	61	45	6	0	47	1.29
13507093--13507126	15	2.1	17	89	10	54	44	0	2	52	1.16
13508670--13508731	2	33.0	2	81	18	80	46	0	1	51	1.10
13519337--13519366	11	2.6	11	94	5	51	26	0	3	70	1.03
13521677--13521717	20	2.0	20	100	0	82	29	9	39	21	1.86
13535722--13535771	24	2.2	21	78	18	64	30	16	10	44	1.80
13536578--13536604	2	13.5	2	100	0	54	51	0	0	48	1.00
13537124--13537167	23	1.9	22	82	17	54	56	4	0	38	1.20
13537799--13537854	29	2.0	29	82	10	71	53	1	0	44	1.11
13540701--13540734	15	2.1	17	89	10	54	44	0	2	52	1.16
13544614--13544763	80	1.9	80	81	2	185	30	16	10	42	1.81
13544862--13544923	30	2.1	30	96	0	115	25	8	16	50	1.72
13550905--13550959	18	3.2	18	79	10	60	76	0	18	5	0.97
13550895--13550958	27	2.4	27	80	12	69	78	1	15	4	1.00
13550925--13550955	8	3.9	8	91	0	53	74	0	16	9	1.07
13551632--13551683	19	2.8	20	80	11	65	78	9	11	0	0.95
13552136--13552207	9	7.6	10	72	17	64	80	0	16	2	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13552137--13552212	8	9.4	8	74	9	57	78	0	18	2	0.86
13552136--13552212	18	4.2	18	77	6	82	79	0	18	2	0.85
13552095--13552212	59	2.1	56	85	4	155	74	0	21	4	0.98
13552136--13552206	38	1.9	38	85	5	101	80	0	16	2	0.83
13552134--13552213	26	2.9	26	75	12	79	77	0	18	3	0.92
13553624--13553657	12	3.0	11	87	8	50	85	0	14	0	0.60
13553624--13553653	14	2.2	14	94	5	53	86	0	13	0	0.57
13556074--13556134	31	2.0	31	93	0	104	37	14	14	32	1.87
13555984--13556217	93	2.5	93	83	5	276	32	19	14	32	1.92
13556168--13556398	126	1.8	127	81	6	290	32	16	18	32	1.93
13556361--13556506	61	2.3	60	81	4	157	28	19	15	35	1.93
13556482--13556631	32	4.8	32	72	11	121	31	14	16	37	1.89
13556421--13556629	93	2.2	93	80	6	228	30	15	16	37	1.90
13558920--13558944	13	1.9	13	100	0	50	48	0	8	44	1.32
13559032--13559074	13	3.2	13	80	6	50	67	2	4	25	1.22
13559099--13559144	3	15.3	3	100	0	92	67	0	0	32	0.91
13559183--13559332	79	1.9	79	91	2	248	41	10	11	36	1.76
13559308--13559360	20	2.6	21	76	8	56	49	20	3	26	1.66
13559502--13559548	24	2.0	24	82	0	58	76	2	4	17	1.04
13562128--13562170	10	4.1	10	79	8	50	6	6	2	83	0.88
13563048--13563078	6	5.2	6	100	0	62	35	0	16	48	1.46
13570055--13570095	21	2.0	21	95	0	73	26	4	12	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13570806--13570847	22	2.0	21	86	13	61	50	9	0	40	1.35
13570920--13571013	47	2.0	46	85	8	127	41	3	0	55	1.16
13579697--13579722	12	2.2	12	100	0	52	30	7	23	38	1.83
13580447--13580514	27	2.5	27	92	0	118	20	23	16	39	1.91
13582144--13582168	12	2.1	12	100	0	50	32	0	8	60	1.26
13582246--13582314	35	1.9	36	94	2	122	33	4	7	55	1.47
13583755--13583899	63	2.3	63	83	7	161	43	11	13	32	1.78
13584444--13584630	62	3.0	62	84	1	248	30	12	14	41	1.84
13585954--13586000	24	2.0	24	83	8	60	55	0	2	42	1.12
13589754--13589801	19	2.5	19	74	12	53	43	0	4	52	1.20
13589920--13589973	27	2.0	27	81	0	63	46	0	0	53	1.00
13590007--13590031	13	1.9	13	100	0	50	56	0	0	44	0.99
13590894--13590948	20	2.6	21	77	16	60	43	1	1	52	1.22
13590912--13590959	20	2.3	20	89	3	69	41	2	2	54	1.24
13590922--13590982	28	2.2	28	82	5	70	39	3	3	54	1.33
13591058--13591132	29	2.8	25	76	21	73	57	2	4	36	1.32
13593695--13593751	16	3.8	16	68	15	50	52	0	0	47	1.00
13594188--13594235	20	2.3	20	79	10	53	58	0	8	33	1.28
13594232--13594267	3	12.0	3	93	0	63	63	0	2	33	1.08
13604009--13604068	29	2.1	29	81	12	70	58	1	1	38	1.18
13604810--13604886	39	2.0	40	94	5	140	54	5	9	31	1.54
13606837--13606870	15	2.3	15	89	0	50	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13613743--13613771	15	1.9	15	100	0	58	20	10	20	48	1.79
13618628--13618661	17	2.0	17	94	0	59	17	14	23	44	1.86
13621015--13622659	161	10.3	159	77	5	1291	41	15	10	32	1.81
13621015--13622660	321	5.2	320	77	5	1432	41	15	10	32	1.80
13623963--13624040	33	2.4	33	80	8	88	26	1	26	44	1.62
13625450--13625719	145	1.9	143	81	7	332	39	10	14	35	1.80
13626524--13626583	30	2.0	30	90	0	93	38	13	15	33	1.86
13626564--13626719	50	3.1	50	80	7	174	43	14	13	28	1.83
13636992--13637020	10	2.7	11	89	10	51	75	10	0	13	1.04
13636995--13637021	10	2.7	10	100	0	54	74	7	0	18	1.05
13637031--13637068	9	4.2	9	87	9	51	76	0	23	0	0.79
13637798--13638168	115	3.2	112	75	4	337	22	26	13	38	1.91
13638423--13638486	33	1.9	33	83	3	83	39	14	10	35	1.81
13639065--13639213	51	2.9	50	76	6	138	36	7	18	36	1.79
13639729--13639767	14	2.7	15	84	8	53	15	10	5	69	1.34
13641714--13641765	26	2.0	26	85	7	70	1	13	5	78	1.01
13641661--13641775	15	7.9	14	68	20	58	4	13	5	77	1.09
13646124--13646361	84	2.8	84	80	6	243	36	19	16	27	1.93
13647644--13647676	16	1.9	18	88	11	52	15	6	6	72	1.24
13649045--13649073	3	9.7	3	100	0	58	34	0	0	65	0.93
13649995--13650042	8	5.5	8	77	18	51	16	2	2	79	0.93
13649981--13650042	28	2.2	29	85	5	83	16	1	1	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13650035--13650080	18	2.6	18	79	3	58	34	0	0	65	0.93
13649983--13650082	9	11.2	9	70	22	52	25	1	1	73	0.96
13652333--13652410	34	2.3	34	80	4	95	32	5	6	56	1.47
13652463--13652551	5	18.4	5	70	16	55	73	4	2	20	1.12
13652481--13652537	23	2.6	23	83	8	75	73	5	1	19	1.11
13652517--13652562	9	4.8	10	82	15	53	76	0	2	21	0.90
13652463--13652562	15	6.9	14	65	17	53	73	4	3	20	1.13
13653400--13653515	3	40.7	3	75	13	93	58	1	5	34	1.30
13653451--13653515	14	4.6	14	75	9	62	56	0	7	35	1.28
13653427--13653515	42	2.1	42	83	8	110	59	1	6	32	1.31
13667744--13667871	63	2.0	63	96	0	238	29	9	15	45	1.78
13670397--13670427	16	1.9	16	93	0	53	35	0	29	35	1.58
13675389--13675580	13	14.2	13	75	15	149	46	34	0	19	1.50
13675408--13675563	6	24.0	6	72	19	109	45	35	0	19	1.50
13675459--13675580	25	4.7	25	84	10	140	44	36	0	19	1.51
13675389--13675575	7	28.4	7	72	14	132	46	34	0	18	1.50
13675687--13675734	21	2.3	21	89	3	71	31	18	6	43	1.75
13676646--13676691	18	2.6	18	89	0	65	67	0	6	26	1.15
13676755--13676884	25	5.2	25	84	3	172	30	11	7	50	1.66
13677407--13677445	17	2.4	16	91	8	62	79	0	10	10	0.94
13682370--13682569	107	1.9	104	82	10	253	43	11	10	35	1.75
13687390--13687434	20	2.2	21	92	4	74	20	4	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13687390--13687434	21	2.2	20	88	4	63	20	4	0	75	0.97
13687661--13687716	19	2.9	19	84	5	60	76	7	3	12	1.11
13689022--13689108	40	2.3	35	75	17	93	41	17	14	26	1.88
13689032--13689263	40	5.8	40	79	3	241	40	17	15	25	1.89
13689025--13689253	81	2.8	80	81	4	289	40	17	15	26	1.89
13689482--13689706	117	1.9	117	83	0	288	44	15	15	25	1.85
13689461--13689664	40	5.2	40	71	12	143	41	16	14	26	1.87
13695674--13695812	69	2.0	69	83	2	172	38	17	10	34	1.83
13700611--13700664	3	19.0	3	79	11	60	33	3	1	61	1.25
13701488--13701584	5	19.6	5	69	16	51	17	3	3	76	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100