genome.fa.s168.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  58  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640482--10640561	32	2.5	32	85	2	117	31	23	13	31	1.93
10640579--10640726	78	1.9	78	82	0	188	43	19	13	23	1.87
10642135--10642161	2	13.5	2	100	0	54	48	0	0	51	1.00
10646814--10646855	17	2.3	19	88	12	61	64	0	0	35	0.94
10646906--10646934	13	2.3	13	94	5	51	41	0	0	58	0.98
10652128--10652152	2	12.5	2	100	0	50	52	0	48	0	1.00
10656999--10657044	23	2.0	23	91	0	74	45	6	15	32	1.71
10659040--10659133	46	2.0	46	97	0	179	50	1	27	21	1.56
10660388--10660443	29	1.9	29	96	0	103	12	26	1	58	1.44
10660562--10660614	8	6.6	8	82	0	61	52	9	0	37	1.34
10668023--10668082	26	2.3	25	80	8	66	51	1	0	46	1.10
10668021--10668081	17	3.5	17	76	10	52	52	1	0	45	1.10
10672362--10672421	31	2.0	30	83	3	75	43	3	5	48	1.41
10673129--10673174	23	2.0	23	100	0	92	30	8	34	26	1.86
10673542--10673585	20	2.3	19	84	4	52	34	6	0	59	1.24
10673554--10673594	20	2.0	20	85	0	55	41	7	0	51	1.30
10674857--10674883	3	9.0	3	100	0	54	66	0	0	33	0.92
10681120--10681187	32	2.1	32	83	0	82	13	22	19	45	1.84
10681501--10681567	32	2.1	32	85	0	89	19	14	14	50	1.77
10681543--10681798	96	2.7	96	82	6	311	17	19	12	49	1.79
10681761--10681836	32	2.4	32	82	4	91	22	23	9	44	1.81
10681450--10681829	96	4.0	93	76	11	277	18	18	13	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10681918--10682032	33	3.5	33	77	2	113	26	19	10	43	1.83
10682351--10682387	19	2.0	18	89	5	56	27	5	0	67	1.12
10682352--10682395	19	2.3	19	84	7	54	31	4	0	63	1.14
10683489--10683617	62	2.1	58	82	12	145	39	10	4	45	1.58
10695698--10696592	357	2.5	354	82	3	1008	36	14	11	37	1.82
10705518--10705572	11	5.0	11	79	0	65	54	1	5	38	1.34
10705466--10705572	22	4.9	22	72	0	79	51	7	5	35	1.54
10705554--10705604	22	2.3	24	74	19	56	43	1	11	43	1.52
10705619--10706002	22	17.7	22	68	13	136	50	7	7	34	1.59
10705853--10705891	19	2.1	19	90	0	60	51	2	7	38	1.44
10705841--10706024	66	2.8	66	86	5	225	48	5	8	36	1.57
10705896--10706024	22	5.9	22	74	3	98	48	4	9	37	1.56
10706132--10706238	22	4.9	22	79	2	63	46	9	6	37	1.62
10706132--10706217	44	2.0	44	81	4	102	45	10	6	37	1.66
10706532--10706673	21	6.7	21	79	2	113	52	4	4	38	1.42
10706565--10706704	42	3.2	42	81	7	165	52	5	2	39	1.37
10706649--10706700	27	2.0	26	84	3	68	55	7	1	34	1.39
10706565--10706704	10	13.8	10	68	16	65	52	5	2	39	1.37
10706838--10706877	2	20.0	2	100	0	80	50	0	0	50	1.00
10708108--10708155	23	2.1	23	88	0	69	35	6	6	52	1.52
10713100--10713154	25	2.2	25	100	0	110	23	16	20	40	1.91
10725834--10725863	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10726520--10726547	2	14.0	2	100	0	56	50	0	0	50	1.00
10727017--10727056	3	13.7	3	84	5	55	60	37	0	2	1.11
10731991--10732041	27	1.9	27	81	18	63	29	3	5	60	1.38
10732262--10732299	18	2.1	19	85	5	51	31	0	2	65	1.06
10732356--10732437	20	3.9	19	72	15	56	50	4	0	45	1.23
10732684--10732729	22	2.1	22	84	8	58	41	2	6	50	1.40
10732972--10733021	18	2.9	17	81	3	64	58	2	0	40	1.10
10738173--10738239	33	1.9	35	85	8	93	29	23	13	32	1.93
10738333--10738364	5	6.8	5	96	3	50	87	12	0	0	0.54
10743987--10744059	10	7.7	10	79	13	59	80	2	6	9	0.98
10744007--10744051	17	2.7	16	80	10	54	82	4	4	8	0.94
10743987--10744049	18	3.5	17	78	12	65	79	3	6	11	1.03
10745810--10745851	14	2.9	14	80	16	50	80	0	16	2	0.81
10745795--10745851	22	2.4	24	85	8	73	80	1	15	1	0.87
10745795--10745851	24	2.4	23	85	11	71	80	1	15	1	0.87
10749147--10749176	3	10.3	3	92	7	53	30	0	0	70	0.88
10749116--10749187	9	7.9	9	78	18	53	23	2	2	70	1.13
10749293--10749337	18	2.3	20	85	11	58	77	0	6	15	0.96
10751568--10751601	13	2.7	13	90	4	52	50	0	0	50	1.00
10751843--10751873	16	1.9	16	93	0	53	64	6	6	22	1.40
10752814--10752852	19	2.1	18	85	4	51	33	0	0	66	0.92
10752837--10752883	19	2.3	20	85	10	69	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10752837--10752892	19	2.8	19	81	13	60	44	0	0	55	0.99
10759148--10759185	15	2.5	15	91	4	58	50	2	0	47	1.15
10759079--10759345	129	2.0	128	79	11	283	49	2	5	41	1.42
10759129--10759366	129	1.8	132	85	8	344	47	2	5	44	1.41
10759271--10759469	102	1.9	107	90	5	327	46	2	6	45	1.41
10759154--10759593	230	1.9	228	84	8	588	46	3	6	44	1.45
10759382--10759609	127	1.8	124	86	4	332	46	3	7	42	1.49
10762280--10762311	16	2.0	16	100	0	64	37	0	0	62	0.95
10762645--10762674	15	2.1	14	93	6	51	13	10	0	76	1.01
10762779--10762825	21	2.2	22	84	3	60	6	8	2	82	0.90
10770127--10770169	17	2.7	15	83	13	59	88	0	11	0	0.52
10770127--10770170	12	3.7	12	79	8	54	86	0	13	0	0.57
10770715--10770752	19	1.9	19	89	5	58	23	7	0	68	1.16
10771971--10772099	46	2.9	43	79	7	159	51	13	3	31	1.59
10772373--10772413	16	2.6	16	88	3	66	53	0	0	46	1.00
10772503--10772625	23	5.3	23	69	14	94	43	0	1	54	1.10
10772530--10772651	51	2.4	47	81	14	122	45	0	1	53	1.10
10772499--10772611	18	6.5	18	72	19	80	45	0	0	53	1.06
10772761--10772814	23	2.4	22	81	12	65	35	9	3	51	1.52
10772761--10772813	22	2.3	23	84	9	65	35	9	3	50	1.53
10773880--10773914	2	17.5	2	100	0	70	51	0	48	0	1.00
10775704--10775750	22	2.1	23	92	4	78	44	4	8	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10775857--10776140	15	19.0	15	71	18	175	53	1	0	44	1.14
10775862--10776153	54	5.3	54	72	21	191	53	1	0	44	1.13
10775872--10776152	13	21.6	13	68	25	136	53	1	0	44	1.14
10776008--10776132	21	5.6	22	71	21	66	54	1	0	43	1.15
10775926--10776153	83	2.7	82	78	11	221	53	1	0	44	1.14
10775868--10776171	31	10.8	28	66	21	102	54	1	0	42	1.14
10776185--10776230	19	2.4	19	85	7	58	43	2	0	54	1.12
10776220--10776268	17	2.8	17	81	9	55	48	0	0	51	1.00
10776161--10776307	16	9.2	16	68	22	53	47	1	1	49	1.18
10776253--10776315	26	2.5	25	85	7	83	49	1	3	46	1.27
10777340--10777364	6	4.2	6	100	0	50	20	32	32	16	1.94
10777534--10777563	6	5.0	6	91	0	51	30	33	20	16	1.94
10782760--10782787	5	5.6	5	100	0	56	78	21	0	0	0.75
10785505--10785583	25	3.3	24	83	15	85	13	2	7	75	1.11
10785499--10785582	24	3.6	23	79	17	84	13	2	9	75	1.15
10785690--10785798	44	2.4	46	83	7	125	47	13	6	32	1.68
10786287--10786400	50	2.3	49	82	5	133	45	15	8	29	1.77
10787764--10787987	43	5.2	43	82	5	272	29	12	13	44	1.81
10787969--10788109	70	2.0	70	98	0	273	25	9	17	47	1.78
10790873--10790911	12	3.3	12	82	7	53	79	5	10	5	1.04
10790869--10790919	23	2.3	22	83	9	68	78	3	13	3	1.03
10792562--10792622	23	2.7	23	89	0	86	67	8	9	14	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10793442--10793472	2	15.5	2	93	0	53	54	45	0	0	0.99
10793631--10793664	12	2.7	13	86	9	52	23	2	0	73	0.97
10795474--10795562	34	2.6	34	85	0	115	30	30	13	25	1.94
10797835--10797873	20	2.0	20	84	0	51	23	0	12	64	1.28
10797898--10797949	19	2.7	20	80	11	63	40	0	0	59	0.97
10797898--10797935	20	1.9	19	89	5	58	39	0	0	60	0.97
10797902--10797976	23	3.3	23	74	18	61	42	0	0	57	0.98
10797861--10797968	18	6.2	18	66	23	61	36	0	2	61	1.11
10799910--10799950	18	2.4	16	84	11	55	48	2	7	41	1.44
10799963--10800022	30	2.0	31	87	9	88	45	3	8	43	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100