genome.fa.s168.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  79  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14179467--14179509	14	3.0	15	80	6	54	72	0	20	6	1.08
14179467--14179509	22	2.0	21	82	17	52	72	0	20	6	1.08
14180032--14180070	4	9.2	4	97	2	60	71	0	23	5	1.05
14181036--14181096	29	2.1	29	81	0	68	32	14	18	34	1.91
14181098--14181140	22	1.9	23	86	13	63	39	18	13	27	1.89
14181396--14181842	32	13.8	31	68	15	117	37	17	15	29	1.90
14181525--14181886	196	1.9	193	81	8	446	37	16	15	30	1.90
14181996--14182062	34	1.9	35	82	8	84	31	19	22	26	1.98
14183350--14183388	20	2.0	20	84	0	51	84	0	2	12	0.72
14184608--14184661	26	2.1	26	93	3	92	37	16	16	29	1.91
14184905--14184948	23	1.9	23	90	0	70	50	6	18	25	1.71
14185012--14185284	40	6.8	41	72	7	184	41	15	8	35	1.78
14185053--14185274	81	2.8	80	80	5	234	40	14	8	35	1.77
14185293--14185353	22	2.8	22	80	5	70	29	29	14	26	1.95
14186833--14186870	19	2.0	19	85	10	51	57	0	31	10	1.32
14187953--14187999	20	2.4	19	82	10	58	46	25	0	27	1.53
14187915--14188004	33	2.8	33	73	17	80	47	27	0	24	1.52
14192275--14192317	19	2.2	20	84	8	54	55	6	0	37	1.27
14192809--14192885	38	2.0	38	82	5	93	53	0	1	45	1.08
14193936--14194083	64	2.3	63	80	6	156	43	13	4	38	1.63
14195828--14195862	15	2.2	16	90	5	54	25	2	2	68	1.17
14199137--14199195	28	2.1	29	90	3	93	28	15	3	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14199875--14200541	51	13.2	50	75	7	443	29	14	10	45	1.78
14199875--14200537	102	6.5	102	74	8	501	29	14	10	45	1.78
14199875--14200511	203	3.1	202	76	6	529	29	14	10	45	1.78
14199875--14200444	305	1.9	305	82	4	729	29	14	9	46	1.76
14202242--14202489	62	4.0	63	70	13	167	43	9	9	37	1.71
14204688--14204851	18	9.3	18	67	24	73	48	34	0	15	1.50
14204703--14204842	7	21.7	7	72	13	88	48	35	0	15	1.51
14204689--14204809	19	6.6	19	70	21	80	50	32	0	16	1.51
14204799--14204842	12	3.6	12	81	12	54	43	40	0	15	1.47
14204799--14204834	12	3.1	12	92	4	56	44	38	0	16	1.48
14204806--14204851	18	2.6	18	93	3	76	45	39	0	15	1.46
14204832--14204868	10	3.3	12	82	17	53	45	45	0	8	1.32
14204816--14204868	18	2.6	21	85	11	67	43	45	0	11	1.40
14208554--14208597	17	2.5	19	78	17	58	45	4	4	45	1.44
14210539--14210606	28	2.4	27	75	4	64	54	2	11	30	1.51
14213946--14214001	27	2.1	27	83	12	71	19	16	25	39	1.91
14213954--14214012	27	2.2	27	87	6	84	20	16	25	37	1.93
14216182--14216502	62	5.2	59	74	13	283	35	9	8	46	1.67
14216259--14216501	60	4.1	58	77	9	240	33	9	9	46	1.69
14216182--14216522	122	2.8	119	81	13	371	35	9	8	46	1.67
14216538--14216626	5	17.4	5	70	19	60	76	2	4	16	1.05
14216568--14216623	27	2.1	27	83	6	69	78	1	3	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14216537--14216597	33	1.9	31	87	9	88	77	3	6	13	1.09
14216538--14216603	16	3.8	18	73	15	59	77	3	4	15	1.06
14216590--14216626	11	3.5	11	78	14	51	75	0	2	21	0.92
14217489--14217557	22	3.1	21	85	12	77	65	4	5	24	1.33
14217493--14217557	21	3.1	21	83	14	82	64	4	6	24	1.36
14217655--14217777	14	9.0	13	71	19	90	80	1	2	15	0.90
14217658--14217777	6	20.7	6	73	16	92	80	1	2	15	0.91
14217659--14217792	60	2.2	60	79	6	157	79	1	3	14	0.94
14217658--14217778	11	11.0	11	77	16	110	79	1	2	16	0.92
14217983--14218083	43	2.4	42	80	12	125	35	20	17	25	1.95
14218050--14218153	41	2.5	41	90	1	154	35	21	17	25	1.95
14219153--14219190	8	4.8	8	87	12	51	5	5	0	89	0.59
14227879--14228243	59	6.2	57	83	8	457	37	12	6	43	1.69
14228281--14228356	5	14.8	5	74	20	68	78	2	3	14	1.00
14228293--14228357	17	4.0	16	75	16	62	76	3	6	13	1.09
14228280--14228349	31	2.3	32	87	7	101	78	2	4	14	1.02
14228281--14228356	11	7.4	10	75	20	68	78	2	3	14	1.00
14229240--14229278	10	3.6	10	81	18	51	76	2	0	20	0.90
14229240--14229286	15	3.4	14	82	14	53	74	4	2	19	1.09
14229246--14229308	23	2.8	24	81	9	62	69	6	4	19	1.28
14229427--14229554	17	7.5	16	68	18	62	75	2	3	17	1.06
14229454--14229542	5	16.4	5	71	21	56	74	3	2	20	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14229427--14229553	29	4.3	28	75	18	91	75	2	3	18	1.06
14229430--14229536	11	9.3	11	69	21	60	74	2	2	19	1.06
14230637--14230668	15	2.1	16	94	5	57	21	18	12	46	1.82
14231139--14231185	20	2.3	21	82	14	62	55	0	8	36	1.31
14233583--14233661	18	4.1	20	79	12	94	32	2	8	55	1.44
14233577--14233649	36	2.0	38	86	5	105	35	1	8	54	1.39
14239863--14239933	17	3.8	17	79	18	79	35	0	0	64	0.94
14239863--14239927	22	3.2	21	78	21	68	32	0	0	67	0.91
14239880--14239930	24	2.2	23	83	13	61	31	0	0	68	0.90
14239852--14239933	39	2.0	41	90	4	132	34	0	1	64	1.01
14239951--14240009	25	2.4	25	74	5	57	62	3	1	32	1.21
14242007--14242085	32	2.5	32	89	2	124	49	15	5	30	1.66
14243223--14243268	23	2.0	24	82	4	58	32	4	6	56	1.45
14242858--14243398	269	2.0	270	89	3	838	43	6	7	42	1.57
14244451--14244671	63	3.5	62	76	8	219	47	7	6	38	1.58
14244451--14244712	63	4.1	63	75	7	208	47	6	6	39	1.56
14244464--14244695	128	1.8	127	82	8	301	45	7	7	39	1.61
14246031--14246077	19	2.5	19	80	10	60	42	2	2	53	1.25
14250003--14250698	239	3.0	229	86	4	921	42	4	10	41	1.61
14250020--14250702	231	2.9	230	86	3	920	43	4	10	40	1.60
14251467--14251505	2	18.5	2	84	10	51	46	2	5	46	1.38
14251622--14251667	24	1.9	24	90	0	74	34	19	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14252104--14252137	16	2.1	16	94	0	59	44	2	0	52	1.16
14258390--14258648	135	1.9	135	86	1	367	36	13	9	40	1.77
14263379--14263436	18	3.3	18	80	7	57	62	0	0	37	0.96
14263389--14263443	25	2.2	24	81	9	65	61	0	1	36	1.06
14270138--14270185	17	2.8	17	75	15	53	50	2	0	47	1.12
14270138--14270191	18	3.1	17	76	15	56	51	1	0	46	1.11
14271037--14271063	2	13.5	2	100	0	54	48	0	0	51	1.00
14272498--14272651	77	2.0	77	94	2	274	24	26	5	42	1.77
14275983--14276018	8	4.5	8	89	0	54	36	0	5	58	1.22
14275980--14276029	16	3.3	16	91	8	79	34	0	4	62	1.14
14276073--14276133	33	1.9	33	83	9	83	19	6	4	68	1.30
14276982--14277160	5	34.4	5	70	24	90	17	1	3	77	1.00
14276981--14277152	6	27.7	6	70	17	95	18	1	2	77	0.98
14276987--14277055	7	10.1	7	75	16	56	17	0	1	81	0.77
14276983--14277151	40	4.1	39	70	25	116	18	1	2	76	0.99
14276981--14277147	13	12.2	13	69	27	91	17	1	2	77	0.99
14277187--14277585	58	6.8	57	85	9	516	42	7	13	35	1.74
14277186--14277585	118	3.4	115	88	6	534	42	7	13	35	1.73
14277187--14277584	176	2.2	176	91	4	649	42	7	13	35	1.73
14287080--14287216	68	2.0	68	98	0	265	27	15	11	45	1.81
14289469--14289526	20	2.9	20	75	10	64	43	13	13	29	1.83
14289871--14290132	143	1.8	142	79	5	305	32	12	15	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14291698--14291732	13	2.7	13	90	0	52	54	28	0	17	1.43
14291708--14291759	13	3.9	14	80	7	54	53	28	0	17	1.44
14291701--14291813	26	4.3	26	73	8	79	50	34	0	15	1.44
14291750--14291817	7	10.4	7	76	9	56	51	33	0	14	1.43
14291769--14291812	13	3.4	13	83	0	52	50	34	0	15	1.45
14291770--14291832	19	3.2	19	82	10	65	49	34	0	15	1.45
14291840--14291880	19	2.2	19	86	4	57	48	29	0	21	1.50
14293516--14293550	14	2.6	13	86	8	52	88	8	2	0	0.61
14295372--14295427	20	2.9	19	84	10	78	57	0	7	35	1.26
14296349--14296405	19	2.9	19	73	19	55	40	5	0	54	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100