genome.fa.s168.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  9  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551810--1551852	20	2.2	19	95	4	77	34	0	13	51	1.42
1553411--1553481	35	2.0	35	91	0	115	36	19	9	33	1.85
1553704--1553773	31	2.3	31	92	2	115	35	15	14	34	1.88
1554214--1554247	8	4.1	8	92	7	59	23	0	0	76	0.79
1554211--1554260	9	5.6	9	81	11	50	30	0	0	70	0.88
1554214--1554260	17	2.7	18	87	9	62	29	0	0	70	0.88
1554423--1554475	25	2.1	25	92	0	88	47	3	0	49	1.19
1557314--1557359	23	2.0	23	91	0	74	52	17	4	26	1.63
1557317--1557367	23	2.4	21	83	9	59	52	15	3	27	1.60
1558958--1559002	18	2.6	17	82	3	54	33	0	2	64	1.06
1559022--1559076	23	2.5	22	80	8	60	54	1	0	43	1.10
1559146--1559171	12	2.2	12	100	0	52	53	0	0	46	1.00
1560249--1560293	8	5.9	8	87	10	67	33	0	0	66	0.92
1560284--1560334	21	2.7	18	81	18	68	50	0	0	49	1.00
1560287--1560331	21	2.2	21	92	7	76	48	0	0	51	1.00
1562623--1562682	27	2.2	28	87	3	86	36	1	1	60	1.17
1563005--1563034	15	2.0	15	93	0	51	33	10	6	50	1.62
1563485--1563517	12	2.8	12	86	13	50	18	9	0	72	1.10
1564105--1564167	31	1.9	31	87	9	90	76	7	12	3	1.13
1566405--1566429	2	12.5	2	100	0	50	0	48	0	52	1.00
1568377--1568420	23	2.0	23	82	13	56	13	13	15	56	1.67
1575646--1575675	3	10.0	3	92	0	51	70	30	0	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577992--1578016	12	2.1	12	100	0	50	48	0	8	44	1.32
1582689--1582720	14	2.3	14	100	0	64	50	9	21	18	1.75
1591493--1591639	79	1.9	79	92	0	249	27	12	13	46	1.79
1596015--1596067	21	2.4	22	81	15	65	54	1	0	43	1.11
1596066--1596090	7	3.6	7	100	0	50	64	0	0	36	0.94
1596785--1596816	10	3.3	10	95	4	57	0	93	0	6	0.34
1596784--1596814	15	2.0	15	93	6	53	0	90	0	9	0.46
1596784--1596815	16	2.0	16	93	0	55	0	90	0	9	0.45
1619652--1619735	30	2.8	30	80	3	89	39	16	0	44	1.48
1620158--1620197	20	2.0	20	90	0	62	55	2	0	42	1.13
1626894--1626965	34	2.2	33	87	7	103	41	1	4	52	1.29
1626941--1626989	20	2.4	19	80	12	53	34	2	4	59	1.28
1627065--1627107	18	2.4	18	92	3	70	58	0	0	41	0.98
1628634--1628672	16	2.5	16	91	4	62	33	5	20	41	1.74
1640974--1641006	17	2.0	16	94	5	57	48	3	0	48	1.17
1646783--1646813	10	3.0	10	95	4	53	0	9	3	87	0.66
1646783--1646815	11	3.1	11	95	4	59	0	9	6	84	0.76
1646859--1646891	9	3.8	9	88	8	50	33	39	0	27	1.57
1647846--1647881	12	3.1	12	92	4	56	44	0	41	13	1.44
1648120--1648145	12	2.2	12	100	0	52	30	23	0	46	1.53
1653741--1653790	20	2.5	21	90	6	77	48	0	2	50	1.12
1653781--1653820	8	5.0	8	87	0	62	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653781--1653828	24	2.0	24	87	0	69	60	0	0	39	0.97
1659708--1659786	29	2.8	28	78	14	81	62	12	0	25	1.31
1659737--1659786	19	2.5	21	87	6	68	64	14	0	22	1.29
1660154--1660193	21	1.9	21	85	10	55	55	7	5	32	1.50
1662316--1662358	2	21.5	2	95	0	77	46	2	0	51	1.13
1668048--1668089	18	2.3	18	87	0	57	42	0	2	54	1.13
1668807--1668863	27	2.2	26	87	9	80	59	5	3	31	1.36
1669766--1669815	23	2.2	22	82	13	57	40	10	0	50	1.36
1670798--1670836	18	2.2	18	85	0	51	15	7	7	69	1.35
1672988--1673101	33	3.3	33	72	13	111	24	8	50	15	1.72
1672988--1673134	72	2.0	72	90	2	233	21	8	51	17	1.72
1675832--1675867	16	2.1	18	90	10	58	36	0	0	63	0.94
1675981--1676028	18	2.7	17	78	15	53	50	8	2	39	1.44
1679651--1679713	31	2.0	31	84	6	83	46	4	14	34	1.66
1681527--1681568	10	4.2	10	78	9	50	76	2	0	21	0.90
1681527--1681567	19	2.1	20	82	13	50	75	2	0	21	0.92
1681626--1681678	27	2.0	27	85	7	74	11	18	35	33	1.87
1682435--1682474	9	4.3	9	93	3	62	87	0	5	7	0.66
1682435--1682481	18	2.7	18	81	15	62	87	0	6	6	0.68
1682441--1682489	16	3.0	17	80	14	59	83	0	6	10	0.80
1682647--1683656	49	20.6	48	79	9	906	39	20	10	28	1.86
1682707--1683632	295	3.2	294	84	6	1132	39	20	10	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683796--1684248	229	2.0	227	90	1	719	42	19	12	26	1.86
1686357--1686395	11	3.6	11	86	6	53	7	7	0	84	0.77
1686352--1686401	21	2.4	21	86	3	66	10	10	0	80	0.92
1686352--1686385	10	3.4	10	88	11	52	8	5	0	85	0.75
1686369--1686408	21	1.9	21	84	0	53	7	15	0	77	0.98
1687671--1687717	24	2.0	24	83	8	60	38	2	0	59	1.09
1688314--1688388	16	4.5	16	73	8	60	14	1	37	46	1.53
1688299--1688388	34	2.7	34	78	10	105	14	1	36	47	1.52
1688301--1688388	17	5.2	17	72	8	81	13	1	36	48	1.50
1690278--1690342	23	2.9	22	84	4	85	33	20	21	24	1.97
1690174--1690454	133	2.1	133	81	5	329	40	17	18	24	1.91
1690422--1690491	22	3.2	22	75	15	65	34	17	18	30	1.94
1690438--1690499	22	2.9	21	75	13	72	35	16	20	27	1.94
1690571--1690630	23	2.7	23	84	2	68	33	21	20	25	1.97
1690458--1690833	133	2.8	132	86	2	497	40	18	17	24	1.91
1690696--1690762	23	3.0	23	82	2	82	35	20	17	25	1.95
1690983--1691043	22	2.7	23	82	2	70	29	18	22	29	1.97
1691243--1691274	15	2.3	15	89	10	50	25	0	0	75	0.81
1691763--1692236	65	7.2	65	77	8	417	34	14	20	30	1.92
1691760--1692251	33	15.0	33	81	5	471	34	14	20	31	1.92
1692255--1692326	33	2.2	33	85	7	94	37	15	16	30	1.90
1693109--1693148	20	2.0	20	90	0	62	10	15	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700291--1700341	14	3.4	15	81	8	59	19	0	29	50	1.48
1700280--1700335	14	3.9	14	77	9	58	19	0	28	51	1.47
1700315--1700356	21	2.0	21	86	9	59	14	0	38	47	1.44
1700335--1700399	14	4.4	14	75	11	58	20	0	33	46	1.51
1700324--1700361	20	1.9	20	84	10	51	15	0	31	52	1.43
1700276--1700415	51	2.7	51	76	15	130	22	0	30	47	1.52
1700352--1700500	17	9.2	16	70	12	81	19	0	32	46	1.55
1700334--1700472	45	2.9	46	72	11	120	20	0	34	44	1.57
1700412--1700500	17	5.2	17	77	5	90	15	1	33	49	1.52
1701910--1701953	20	2.2	20	83	4	52	13	4	2	79	0.98
1703855--1703887	14	2.4	14	100	0	66	18	21	6	54	1.64
1715792--1715868	37	2.1	37	90	4	120	41	11	2	44	1.55
1716110--1716170	26	2.3	26	83	5	79	31	19	4	44	1.72
1720081--1720123	7	6.0	7	86	2	50	44	6	0	48	1.29
1720089--1720122	7	4.9	7	92	0	59	44	8	0	47	1.34
1720081--1720122	21	2.0	22	95	4	77	45	7	0	47	1.30
1721122--1721165	22	1.9	24	86	9	65	52	0	0	47	1.00
1721461--1721486	2	13.0	2	100	0	52	50	0	0	50	1.00
1721669--1721756	44	2.0	44	95	0	158	17	21	23	37	1.94
1723663--1723706	23	1.9	23	81	9	54	27	0	0	72	0.85
1724740--1724766	4	6.8	4	100	0	54	51	22	0	25	1.48
1732678--1732724	2	23.5	2	86	0	58	51	0	4	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734634--1734674	18	2.2	19	91	4	66	34	2	0	63	1.08
1740692--1740745	21	2.6	21	82	5	74	40	11	1	46	1.50
1740837--1740890	27	2.0	27	96	0	99	38	7	0	53	1.29
1740844--1740900	27	2.1	27	90	6	89	40	10	0	49	1.37
1740895--1740939	13	3.7	13	82	14	60	53	13	2	31	1.52
1756968--1757011	17	2.6	16	79	10	52	45	0	0	54	0.99
1756968--1757013	18	2.7	18	83	6	60	45	0	0	54	0.99
1757091--1757151	31	1.9	31	83	3	77	45	9	0	44	1.37
1765110--1765143	17	2.1	15	89	10	50	79	0	20	0	0.73
1766077--1766105	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100