genome.fa.s168.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  69  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12329913--12329954	18	2.3	19	84	12	52	2	14	2	80	0.90
12329931--12329996	1	66.0	1	75	0	51	3	6	4	86	0.78
12330293--12330402	52	2.1	53	86	5	150	16	13	14	55	1.70
12332892--12333049	78	2.0	78	97	0	298	32	15	20	31	1.94
12333982--12334031	17	3.1	16	76	18	50	34	0	8	58	1.28
12335096--12335161	3	22.0	3	93	0	69	43	0	22	33	1.54
12335191--12335243	3	18.3	3	80	7	65	67	3	0	28	1.07
12335926--12336265	114	3.0	114	73	8	273	34	12	24	27	1.92
12347612--12347660	21	2.4	21	83	12	59	73	0	4	22	1.00
12347620--12347682	21	2.8	21	81	13	65	71	1	4	22	1.13
12347629--12347713	24	3.4	24	80	11	84	70	2	5	21	1.20
12347629--12347713	25	3.4	25	79	14	79	70	2	5	21	1.20
12347675--12347714	19	2.2	19	90	4	64	75	2	7	15	1.14
12348581--12348605	3	8.3	3	100	0	50	68	0	0	32	0.90
12349545--12349586	20	2.0	21	86	4	59	45	4	0	50	1.23
12350099--12350133	16	2.2	16	90	10	54	71	0	5	22	1.07
12350163--12350201	2	20.0	2	92	5	62	51	2	0	46	1.14
12350162--12350201	21	1.9	21	100	0	80	50	5	0	45	1.23
12360002--12360043	2	21.0	2	90	0	66	45	0	4	50	1.23
12364159--12364189	9	3.6	9	91	8	55	12	0	9	77	0.99
12364152--12364194	17	2.5	17	81	7	52	18	0	6	74	1.04
12368086--12368177	47	2.0	46	91	2	148	29	13	6	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12368894--12368935	16	2.8	15	82	10	50	2	23	0	73	0.94
12369061--12369097	19	2.0	18	89	5	56	45	10	10	32	1.74
12369653--12369685	17	2.0	17	88	5	50	45	3	18	33	1.65
12372827--12372963	34	3.9	34	74	11	98	67	3	7	21	1.30
12372836--12372951	38	3.2	36	67	26	91	67	3	7	21	1.32
12372797--12372965	72	2.3	72	86	6	232	68	4	5	21	1.28
12373745--12373773	3	9.7	3	100	0	58	65	0	0	34	0.93
12374244--12374372	20	6.0	20	66	21	57	60	2	2	34	1.22
12374297--12374341	19	2.4	19	84	0	54	68	0	2	28	1.01
12376438--12376486	18	2.6	19	80	9	64	77	4	4	14	1.06
12376438--12376491	6	8.7	6	79	6	54	77	5	3	12	1.07
12380731--12380792	26	2.4	25	78	17	65	41	1	0	56	1.09
12380740--12380793	27	2.0	27	82	7	65	46	1	0	51	1.11
12380629--12380892	96	2.7	94	80	10	268	42	4	2	50	1.36
12380712--12381090	197	2.0	193	81	10	452	38	5	4	51	1.44
12381093--12381165	8	8.9	8	74	15	51	31	0	2	65	1.06
12380750--12381177	182	2.3	187	79	10	444	39	4	3	52	1.39
12381093--12381187	49	1.9	49	82	0	118	38	0	3	57	1.14
12381865--12381907	16	2.6	17	77	7	52	58	2	6	32	1.38
12382111--12382635	88	6.0	88	71	15	249	40	7	7	44	1.60
12382090--12382638	87	6.4	86	73	11	304	40	6	7	45	1.58
12387348--12387386	12	2.9	14	88	11	64	41	0	15	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12387893--12387923	6	5.0	6	96	4	53	16	0	0	83	0.64
12388271--12388392	41	2.8	42	80	11	131	34	15	9	40	1.81
12391966--12391999	14	2.4	14	85	0	50	64	0	2	32	1.08
12392379--12392416	13	2.9	13	84	11	51	73	2	0	23	0.95
12393351--12393376	8	3.2	8	100	0	52	0	0	26	73	0.84
12398009--12398038	11	2.6	12	89	10	53	66	0	23	10	1.21
12400274--12400325	21	2.5	21	83	0	68	59	3	23	13	1.50
12406576--12406688	3	36.3	3	72	21	51	30	0	5	64	1.15
12406775--12406807	11	2.8	12	86	9	50	18	0	0	81	0.68
12407269--12407313	20	2.2	20	84	0	54	33	28	22	15	1.95
12407556--12407597	14	3.1	15	80	19	56	7	42	21	28	1.79
12407556--12407592	13	2.7	14	80	20	51	8	43	24	24	1.81
12407691--12408137	149	3.0	152	92	2	765	29	14	17	38	1.90
12411171--12411221	3	17.3	3	95	4	95	68	0	0	31	0.90
12418315--12418364	21	2.4	21	86	0	64	14	24	2	60	1.45
12420593--12420623	11	2.8	11	95	0	53	6	22	0	70	1.09
12426613--12426646	14	2.4	14	85	0	50	32	2	0	64	1.08
12430219--12430350	41	3.0	41	77	13	140	42	9	15	33	1.78
12431227--12431265	12	2.9	14	85	14	64	43	15	0	41	1.46
12431961--12431994	15	2.5	13	86	13	50	29	0	11	58	1.33
12434887--12434941	17	3.1	17	84	5	65	72	0	20	7	1.07
12435937--12435999	15	4.5	15	72	16	55	79	0	14	6	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12435934--12436001	31	2.4	27	78	9	73	80	0	13	5	0.87
12436053--12436086	17	2.0	17	94	0	59	67	0	0	32	0.91
12436693--12436805	30	3.8	30	77	4	111	44	2	14	38	1.59
12437047--12437446	129	3.1	125	79	6	399	39	8	11	40	1.71
12437103--12437441	128	2.6	126	83	4	408	40	7	10	41	1.69
12438239--12438374	20	6.9	20	73	18	83	48	0	1	50	1.10
12438335--12438456	16	7.1	16	70	18	68	45	1	2	50	1.24
12438273--12438417	57	2.5	58	77	11	136	49	0	2	47	1.18
12439043--12439072	15	2.0	15	93	0	51	23	0	0	76	0.78
12439887--12439935	14	3.5	14	82	15	57	14	0	6	79	0.91
12439886--12439938	19	2.5	22	76	14	58	15	0	5	79	0.91
12440618--12440646	13	2.3	13	94	5	51	82	0	0	17	0.66
12443194--12443322	3	43.3	3	69	27	73	30	1	3	64	1.21
12443194--12443322	14	8.7	15	70	26	73	30	1	3	64	1.21
12443270--12443335	4	16.8	4	78	12	50	28	0	1	69	0.97
12443703--12443757	26	2.2	25	90	3	83	41	9	18	30	1.81
12443899--12443947	20	2.5	20	93	0	80	22	26	26	24	2.00
12444190--12444231	14	3.1	15	80	19	56	7	42	21	28	1.79
12444190--12444226	13	2.7	14	80	20	51	8	43	24	24	1.81
12444299--12444328	11	2.7	11	100	0	60	13	0	6	80	0.91
12444288--12444364	33	2.4	32	78	4	55	9	2	5	83	0.89
12444278--12444306	1	29.0	1	100	0	58	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12444354--12444652	152	2.0	153	93	0	510	28	15	17	38	1.90
12447902--12447930	1	29.0	1	100	0	58	100	0	0	0	0.00
12448428--12448453	1	26.0	1	100	0	52	100	0	0	0	0.00
12449612--12450074	41	11.5	41	90	6	591	22	17	23	36	1.95
12449612--12450074	83	5.7	81	89	7	576	22	17	23	36	1.95
12450081--12450232	1	152.0	1	83	0	169	90	6	0	3	0.56
12450079--12450232	48	3.3	46	88	6	211	89	7	0	3	0.57
12450607--12450645	11	3.7	11	86	6	55	12	0	0	87	0.55
12451050--12451092	19	2.2	20	95	4	79	37	32	25	4	1.77
12451048--12451164	61	1.9	63	82	7	150	31	29	21	17	1.96
12451110--12451154	20	2.2	20	84	0	54	33	28	22	15	1.95
12451398--12451439	14	3.1	15	80	19	56	7	42	21	28	1.79
12451398--12451434	13	2.7	14	80	20	51	8	43	24	24	1.81
12451543--12451994	151	3.0	151	93	2	755	29	14	17	37	1.90
12453215--12453262	3	16.3	3	95	4	89	31	0	0	68	0.90
12454765--12454792	10	2.8	10	100	0	56	7	7	0	85	0.73
12457143--12457185	22	1.9	22	85	4	59	53	11	23	11	1.69
12458059--12458114	27	2.1	27	93	0	94	41	3	10	44	1.56
12460159--12460215	22	2.5	23	78	13	57	29	3	5	61	1.35
12477231--12477286	18	2.9	19	76	10	60	35	0	3	60	1.14
12477434--12477470	17	2.1	18	90	5	58	37	0	8	54	1.30
12481245--12481270	13	2.0	13	100	0	52	46	0	7	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12481297--12481346	22	2.3	22	79	3	57	58	6	6	30	1.46
12481886--12481950	17	3.5	18	77	22	64	46	0	3	50	1.17
12481890--12481931	22	1.9	23	90	9	70	47	0	2	50	1.14
12482106--12482171	31	2.2	30	81	8	71	39	3	0	57	1.14
12482259--12482297	14	2.8	14	88	7	53	51	0	0	48	1.00
12482273--12482331	30	1.9	31	82	6	75	54	1	0	44	1.10
12482815--12482864	20	2.5	21	78	18	61	16	4	8	72	1.24
12482824--12482866	18	2.4	17	77	11	50	18	4	6	69	1.29
12483639--12483677	20	2.0	20	84	0	51	76	0	15	7	0.99
12484484--12484521	18	2.2	18	95	4	69	28	0	10	60	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100