genome.fa.s168.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  37  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7084134--7084300	3	61.0	3	65	20	64	61	4	0	32	1.21
7084141--7084259	5	24.2	5	74	13	52	60	4	0	34	1.22
7084238--7084293	8	6.9	8	85	2	76	60	5	0	33	1.19
7085847--7085884	16	2.4	16	86	0	58	23	0	5	71	1.07
7086384--7086417	17	1.9	18	88	5	52	82	0	11	5	0.83
7087257--7087285	13	2.3	13	94	5	51	6	3	0	89	0.57
7095066--7095090	12	2.1	12	100	0	50	76	8	0	16	1.02
7095128--7095397	59	4.7	57	85	3	387	34	15	7	43	1.74
7095128--7095398	116	2.3	116	92	2	447	33	15	7	43	1.74
7095410--7095487	10	7.8	9	74	17	57	75	2	8	12	1.13
7095418--7095504	15	5.5	15	70	22	54	74	2	9	13	1.15
7095415--7095487	22	3.5	20	78	17	62	76	2	8	12	1.10
7095447--7095503	28	2.0	29	83	13	73	75	1	10	12	1.12
7095417--7095487	30	2.3	31	79	20	78	76	2	8	12	1.12
7095410--7095550	19	7.0	19	66	17	63	72	3	6	17	1.20
7096481--7096540	14	4.0	15	80	18	63	63	3	0	33	1.11
7096583--7096633	3	16.7	3	81	18	61	66	3	0	29	1.09
7096573--7096633	12	5.0	13	84	11	76	63	4	0	31	1.15
7096821--7097071	41	6.1	41	91	3	398	36	24	15	23	1.93
7096821--7097066	80	3.0	83	89	6	392	36	23	15	23	1.93
7098287--7098364	28	2.7	29	83	13	83	7	19	0	73	1.07
7098291--7098361	19	3.9	18	71	20	58	7	18	0	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7098287--7098364	29	2.9	27	81	12	90	7	19	0	73	1.07
7105052--7105629	57	9.7	57	85	10	700	33	13	8	45	1.72
7105416--7105505	27	3.2	27	64	20	67	36	13	6	43	1.70
7105052--7105635	239	2.4	238	89	7	859	33	13	8	45	1.73
7105707--7105774	12	5.9	11	74	14	57	80	5	1	11	0.94
7106769--7106811	7	6.0	7	84	13	52	65	6	0	27	1.18
7106770--7106814	17	2.8	16	80	19	58	66	6	0	26	1.16
7113336--7113578	109	2.2	109	92	0	405	20	19	13	46	1.83
7113567--7114040	126	3.7	125	86	6	610	23	17	12	45	1.83
7114044--7114468	126	3.3	126	84	3	499	24	16	12	46	1.81
7114296--7114643	174	2.0	175	83	6	434	21	14	14	48	1.80
7114170--7115084	309	3.0	308	89	2	1402	23	16	13	46	1.82
7114739--7114828	45	1.9	46	84	6	119	17	16	15	50	1.79
7114808--7115012	58	3.4	58	65	15	151	23	21	13	40	1.89
7114787--7115227	126	3.4	126	87	6	596	23	17	13	45	1.83
7114966--7115254	135	2.1	135	89	5	433	23	15	13	47	1.81
7115003--7115226	68	3.3	68	67	7	195	22	15	13	48	1.80
7115411--7115462	10	5.1	10	75	11	52	82	13	1	1	0.84
7115411--7115462	20	2.6	19	82	14	61	82	13	1	1	0.84
7115413--7115455	16	2.9	15	86	10	61	86	11	0	2	0.67
7115585--7115625	21	1.9	22	85	5	57	48	4	2	43	1.37
7117161--7117206	8	6.0	8	87	7	60	50	17	0	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7117161--7117206	15	3.0	15	81	12	58	50	17	0	32	1.47
7117184--7117257	31	2.4	31	80	15	89	48	24	4	22	1.68
7117162--7117250	16	5.8	15	73	6	63	50	21	3	24	1.64
7118866--7118897	2	16.5	2	93	6	57	50	0	0	50	1.00
7120390--7120449	31	2.0	30	83	9	77	28	10	6	55	1.58
7124272--7124344	31	2.5	30	82	12	82	32	8	5	53	1.54
7124373--7124438	29	2.2	30	81	7	82	43	3	7	45	1.47
7125108--7125193	40	2.1	43	89	6	133	34	12	19	32	1.90
7125363--7125392	2	15.0	2	92	0	51	46	0	3	50	1.18
7128275--7128305	3	10.3	3	100	0	62	32	0	0	67	0.91
7129821--7130096	141	2.0	142	91	2	448	31	16	18	33	1.93
7130101--7130138	15	2.5	15	84	12	51	10	2	7	78	1.04
7133409--7133472	9	7.6	9	83	13	75	78	0	10	10	0.98
7133410--7133472	25	2.5	26	92	7	112	77	0	11	11	0.99
7133437--7133485	14	3.3	14	83	11	53	75	0	14	10	1.04
7133410--7133487	17	5.0	14	77	19	66	75	0	14	10	1.04
7133410--7133486	8	9.6	8	83	14	97	76	0	12	10	1.02
7134485--7134778	42	7.1	41	89	6	418	22	16	23	36	1.94
7135000--7135044	10	4.6	10	86	10	58	24	0	6	68	1.13
7134997--7135136	16	8.3	16	69	17	65	29	0	5	65	1.13
7135002--7135133	13	9.8	13	68	22	69	31	0	4	64	1.14
7135002--7135133	3	42.3	3	68	24	53	31	0	4	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7135012--7135133	45	2.7	46	74	17	121	31	0	4	63	1.13
7135003--7135138	73	1.9	73	82	14	174	30	0	4	65	1.12
7135585--7135639	26	2.2	26	83	9	69	36	5	18	40	1.74
7135858--7135896	16	2.4	17	82	8	53	51	0	48	0	1.00
7136161--7136199	4	9.8	4	83	10	53	20	0	2	76	0.90
7136220--7136259	17	2.3	18	86	4	55	15	7	0	77	0.98
7136220--7136269	11	4.5	11	76	18	50	14	6	0	80	0.90
7136220--7136269	6	8.8	6	76	12	52	14	6	0	80	0.90
7136220--7136269	22	2.2	22	86	10	66	14	6	0	80	0.90
7136328--7136607	123	2.3	117	90	6	436	44	7	14	33	1.74
7136328--7136607	61	4.6	61	90	5	428	44	7	14	33	1.74
7137814--7137856	20	2.2	20	95	0	77	34	6	27	30	1.83
7139199--7139255	30	1.9	30	85	7	80	28	1	7	63	1.30
7146409--7146449	20	2.0	21	85	4	57	36	0	4	58	1.20
7147928--7147980	3	17.7	3	100	0	106	67	0	0	32	0.91
7148036--7148085	26	1.9	26	83	0	64	30	18	28	24	1.97
7151515--7151545	15	2.1	15	100	0	62	51	6	6	35	1.53
7152446--7153025	202	2.9	198	78	12	495	42	12	16	28	1.85
7156440--7156478	19	2.0	20	85	9	55	64	0	2	33	1.08
7158039--7158077	19	2.0	20	95	5	71	46	0	0	53	1.00
7158094--7158127	17	2.1	16	88	5	50	20	0	5	73	1.04
7158247--7158280	13	2.5	13	90	4	50	55	8	0	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7158326--7158365	20	2.0	21	90	5	64	27	30	25	17	1.97
7158435--7158577	3	47.0	3	66	21	50	30	1	4	63	1.24
7158468--7158520	27	2.0	27	88	0	79	30	0	3	66	1.10
7158534--7158577	17	2.6	17	88	0	61	31	4	2	61	1.28
7158545--7158577	11	2.8	12	90	9	59	33	6	0	60	1.21
7158991--7159040	25	2.0	24	84	7	64	34	6	18	42	1.74
7159568--7159691	15	7.7	15	67	21	56	18	5	1	74	1.10
7159564--7159631	19	3.6	19	73	13	68	22	4	1	72	1.11
7159564--7159636	38	1.9	38	88	5	112	21	4	1	72	1.09
7159630--7159678	19	2.7	18	78	9	55	14	4	2	79	0.97
7159659--7159702	23	1.9	23	86	9	63	15	9	0	75	1.05
7159711--7160006	60	4.9	60	89	5	458	45	8	12	33	1.71
7160041--7160069	6	4.8	6	100	0	58	17	0	13	68	1.20
7163849--7163888	18	2.3	17	87	12	55	70	0	22	7	1.12
7163879--7163913	9	3.7	9	88	11	52	85	0	14	0	0.59
7163876--7163913	20	1.9	20	88	0	58	84	0	15	0	0.63
7163857--7163921	28	2.3	27	82	12	69	78	0	16	4	0.91
7164827--7164880	16	3.4	16	67	23	51	33	14	14	37	1.88
7164815--7164890	31	2.5	31	100	0	152	31	17	15	35	1.91
7165131--7165261	41	3.1	42	89	6	187	24	18	23	33	1.97
7165270--7165313	8	5.9	8	84	15	67	88	11	0	0	0.51
7165268--7165310	13	3.3	13	90	6	61	88	11	0	0	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7165268--7165313	21	2.2	20	96	3	83	89	10	0	0	0.50
7165510--7165658	16	9.1	16	67	19	60	28	2	5	63	1.27
7165615--7165658	17	2.6	17	88	0	61	31	4	2	61	1.28
7165626--7165658	11	2.8	12	90	9	59	33	6	0	60	1.21
7166600--7166669	19	3.7	18	76	12	70	20	4	2	72	1.14
7166598--7166715	10	12.4	10	68	16	72	17	4	2	75	1.08
7166757--7167045	60	4.9	58	86	7	400	44	6	13	34	1.70
7166750--7167045	121	2.5	119	91	2	479	45	6	13	34	1.69
7167080--7167108	6	4.8	6	100	0	58	17	0	13	68	1.20
7167695--7167726	3	10.7	3	100	0	64	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100