genome.fa.s168.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  67  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12070832--12071070	119	2.0	119	90	3	383	38	12	20	28	1.90
12078206--12078240	14	2.5	14	90	0	52	68	0	0	31	0.90
12081059--12081102	23	1.9	23	86	9	63	40	11	4	43	1.61
12081626--12081661	19	2.0	19	89	10	58	63	5	5	25	1.38
12089797--12089891	19	5.0	19	68	8	68	52	14	7	25	1.67
12089798--12089889	38	2.4	38	84	10	109	52	15	7	25	1.69
12090051--12090096	22	2.2	21	88	7	67	45	15	2	36	1.58
12090120--12090315	24	8.5	24	70	12	101	40	13	7	38	1.73
12090119--12090269	70	2.2	69	87	1	221	41	14	7	36	1.74
12090186--12090338	44	3.3	46	77	9	152	42	9	8	39	1.68
12090577--12090612	17	2.1	17	90	10	56	33	0	2	63	1.08
12090580--12090611	14	2.2	15	94	5	57	34	0	3	62	1.11
12090588--12090630	14	3.0	14	86	3	50	30	0	0	69	0.88
12090997--12091051	27	2.2	24	83	9	65	40	5	18	36	1.74
12091553--12091674	10	10.6	11	67	28	51	20	4	3	72	1.16
12091552--12091612	27	2.3	26	83	8	70	22	3	6	67	1.29
12091592--12091631	17	2.3	18	82	8	55	12	7	5	75	1.18
12091634--12091668	10	3.5	10	85	14	54	22	0	0	77	0.78
12091635--12091674	20	2.0	21	95	5	73	22	2	0	75	0.93
12091683--12092100	59	6.9	60	82	9	426	44	7	12	35	1.71
12091704--12092103	182	2.2	177	86	5	547	43	7	13	36	1.71
12095905--12095982	8	9.4	8	82	12	86	82	0	15	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12095907--12095982	35	2.2	35	90	0	116	82	0	14	2	0.77
12095907--12095980	27	2.7	27	87	4	96	83	0	13	2	0.74
12095907--12095955	1	49.0	1	79	0	53	89	0	10	0	0.48
12097203--12097338	42	3.4	39	88	9	202	25	18	18	38	1.93
12097203--12097331	40	3.2	40	89	9	208	24	17	18	39	1.92
12097477--12097515	21	1.9	21	89	5	62	20	35	28	15	1.93
12097558--12097587	13	2.2	14	94	5	53	0	16	0	83	0.65
12097638--12097674	4	9.2	4	87	0	56	24	0	5	70	1.08
12097643--12097679	12	3.1	12	88	0	56	24	0	5	70	1.08
12098125--12098179	27	2.2	24	83	9	65	40	5	18	36	1.74
12098316--12098358	20	2.2	20	87	4	61	30	23	16	30	1.96
12098665--12098733	27	2.5	26	75	9	66	21	2	4	71	1.17
12098713--12098775	10	6.2	10	77	1	63	17	3	0	79	0.86
12098714--12098782	20	3.4	19	81	16	77	17	4	0	78	0.91
12098790--12099142	59	6.0	58	80	12	407	44	7	11	35	1.70
12098811--12099142	117	2.8	115	87	5	472	43	7	12	36	1.71
12099856--12099958	44	2.3	44	77	0	107	33	17	16	33	1.92
12100029--12100152	40	3.2	39	75	7	126	35	16	8	40	1.78
12100468--12100526	20	3.0	20	94	0	100	18	30	28	22	1.97
12100823--12100847	10	2.5	10	100	0	50	16	0	0	84	0.63
12101301--12101345	19	2.4	19	88	0	63	22	31	22	24	1.99
12101565--12101607	5	8.6	5	85	10	61	20	44	34	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12101558--12101611	15	3.6	15	82	0	63	18	48	29	3	1.65
12101698--12102135	156	2.8	156	98	0	849	28	14	18	37	1.91
12105794--12105865	7	10.3	7	75	19	62	77	0	16	5	0.94
12105795--12105863	8	8.5	8	81	13	52	79	0	14	5	0.90
12105825--12105867	16	2.8	16	89	3	70	72	0	18	9	1.11
12105771--12105865	42	2.3	43	82	12	110	75	0	16	7	1.01
12107047--12107474	124	3.5	122	88	5	616	22	17	21	38	1.93
12107047--12107498	165	2.7	165	92	2	741	22	18	21	37	1.94
12107068--12107498	41	10.5	41	89	6	567	22	18	22	36	1.95
12107069--12107498	206	2.1	206	88	6	658	22	18	22	36	1.95
12107624--12107682	20	3.0	20	94	0	100	18	30	28	22	1.97
12107972--12108004	12	2.9	12	86	13	52	21	0	0	78	0.75
12108319--12108391	31	2.4	31	86	4	103	21	24	24	28	1.99
12108453--12108495	19	2.3	19	87	0	59	23	30	20	25	1.99
12108717--12108754	5	7.6	5	82	11	51	21	44	34	0	1.52
12108775--12108821	16	2.9	16	87	0	58	8	0	4	87	0.67
12108774--12108803	1	30.0	1	100	0	60	0	0	0	100	0.00
12108775--12108819	10	4.3	10	86	10	54	6	0	2	91	0.50
12108853--12109290	156	2.8	156	97	1	824	28	14	18	38	1.90
12111017--12111064	25	1.9	25	91	8	80	39	14	16	29	1.88
12111624--12111654	16	1.9	16	93	0	53	16	6	9	67	1.39
12115381--12115438	16	3.8	15	77	11	55	10	6	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12115613--12115651	14	2.7	14	84	4	51	10	10	2	76	1.10
12116031--12116059	12	2.3	13	94	5	51	48	0	0	51	1.00
12116227--12116257	9	3.3	9	95	4	53	32	0	0	67	0.91
12116747--12116779	2	17.5	2	87	12	52	45	0	0	54	0.99
12116883--12116930	25	1.9	25	87	8	71	20	8	2	68	1.26
12117268--12117302	2	17.5	2	93	0	61	45	0	0	54	0.99
12118701--12118771	27	2.6	27	81	0	97	22	8	19	49	1.75
12128274--12128308	18	1.9	18	88	0	52	42	2	0	54	1.15
12129376--12129560	3	64.3	3	69	12	75	35	8	2	54	1.43
12132465--12132502	20	2.0	20	89	5	60	68	10	21	0	1.19
12132555--12132810	58	4.4	58	86	9	355	41	8	14	35	1.76
12134519--12134602	41	2.1	39	86	4	114	20	10	3	65	1.38
12135047--12135077	14	2.2	14	94	0	53	6	16	3	74	1.16
12144031--12144135	56	1.9	54	86	3	147	58	11	19	11	1.63
12144763--12145023	114	2.3	114	80	2	317	23	22	15	38	1.92
12144781--12145076	114	2.6	114	80	3	283	23	23	14	38	1.91
12145486--12145516	3	10.3	3	92	0	53	32	3	0	64	1.09
12145988--12146447	59	7.7	59	76	8	405	36	12	7	42	1.72
12146464--12146590	9	13.4	9	75	20	59	74	3	2	19	1.09
12146458--12146509	24	2.2	23	89	3	77	75	0	5	19	1.01
12146532--12146590	12	5.3	11	74	15	50	79	1	1	16	0.89
12146524--12146590	32	2.1	34	86	8	79	77	1	1	19	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12147521--12147583	4	16.2	4	80	9	69	71	0	3	25	1.01
12147622--12147662	13	3.1	13	83	16	57	75	2	2	19	1.03
12147626--12147669	21	2.3	18	88	11	61	77	2	4	15	1.04
12147856--12147969	46	2.5	46	94	0	192	39	21	17	21	1.92
12148094--12148417	41	7.9	42	82	6	423	40	21	15	22	1.91
12148094--12148417	82	3.9	82	93	2	526	40	21	15	22	1.91
12148083--12148524	123	3.5	123	79	13	441	40	20	15	23	1.90
12148401--12148433	16	2.1	16	100	0	66	45	12	18	24	1.83
12148319--12148515	98	2.0	98	94	2	342	41	18	16	24	1.90
12148416--12148523	41	2.7	39	77	12	119	40	18	14	25	1.89
12148791--12148895	43	2.4	44	80	12	126	35	16	10	38	1.83
12154221--12154420	58	3.4	57	86	5	249	35	14	8	42	1.75
12154438--12154562	60	2.1	56	86	7	151	35	12	8	44	1.71
12154945--12154987	21	2.0	21	86	8	61	0	37	0	62	0.95
12155617--12155721	52	2.0	51	82	12	126	75	2	4	17	1.10
12155657--12155723	25	2.7	24	75	15	73	79	2	2	14	0.98
12156624--12156705	19	4.2	19	73	25	80	19	6	2	71	1.18
12156633--12156709	25	3.1	24	76	9	75	20	5	2	71	1.18
12156635--12156710	16	4.7	16	74	19	61	21	5	2	71	1.19
12158767--12158821	14	3.6	14	75	15	56	76	12	1	9	1.10
12158989--12159057	34	2.0	34	82	0	84	42	8	8	40	1.67
12159007--12159076	34	2.1	34	83	0	86	45	7	10	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12165100--12165181	7	12.6	7	72	12	59	17	1	37	43	1.56
12165097--12165156	19	3.2	19	80	0	66	16	1	33	48	1.56
12165102--12165174	38	1.9	37	86	10	103	17	1	35	45	1.58
12165252--12165294	18	2.4	17	85	11	59	16	0	37	46	1.47
12165252--12165305	6	9.0	6	74	22	51	16	0	35	48	1.47
12165260--12165316	30	1.9	30	88	0	87	21	1	29	47	1.61
12166665--12166745	33	2.4	34	87	6	110	40	3	20	34	1.71
12167056--12167458	196	2.0	203	95	3	739	40	14	14	30	1.86
12172565--12172603	19	2.0	19	85	5	51	53	7	2	35	1.43
12175094--12175187	49	1.9	49	97	0	179	35	15	12	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100