genome.fa.s168.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  46  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8473669--8473696	14	2.0	14	100	0	56	42	21	7	28	1.79
8474490--8474523	4	8.5	4	100	0	68	23	0	0	76	0.79
8474519--8474565	3	15.7	3	100	0	94	31	0	0	68	0.90
8474940--8475021	33	2.5	31	79	16	85	62	1	1	35	1.11
8475095--8475147	26	2.0	26	82	13	65	52	3	0	43	1.19
8475456--8475511	13	4.1	14	77	11	62	44	0	7	48	1.30
8474679--8475895	641	1.9	646	85	6	1690	45	8	5	41	1.58
8477666--8477697	8	4.0	8	100	0	64	0	37	12	50	1.41
8478706--8478748	21	2.0	21	86	0	59	39	0	2	58	1.11
8478851--8478882	16	1.9	17	93	6	57	43	0	6	50	1.27
8478870--8478938	30	2.3	30	80	2	86	47	4	8	39	1.54
8479802--8479855	20	2.8	20	79	17	62	46	0	1	51	1.11
8479808--8479886	24	3.2	24	72	18	72	49	0	1	49	1.09
8480092--8480149	27	2.1	29	83	6	75	62	3	0	34	1.12
8481942--8481969	13	2.2	13	100	0	56	35	14	21	28	1.92
8483464--8483498	16	2.1	16	89	5	52	37	5	2	54	1.39
8483463--8483520	17	3.2	18	76	14	57	41	3	5	50	1.42
8488190--8488241	26	1.9	27	84	7	70	57	3	5	32	1.40
8498341--8498373	16	2.1	16	100	0	66	42	18	0	39	1.50
8501062--8501142	27	2.9	28	79	3	92	35	20	8	34	1.84
8502720--8502769	24	2.1	23	82	14	57	50	16	2	32	1.56
8502901--8502933	16	2.1	16	100	0	66	42	18	0	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8509608--8509669	31	2.0	31	83	0	79	38	12	8	40	1.73
8511104--8511139	2	18.0	2	100	0	72	50	0	0	50	1.00
8512761--8512794	15	2.2	16	94	5	61	91	5	2	0	0.51
8512963--8512993	2	15.5	2	100	0	62	0	48	0	51	1.00
8515509--8515589	27	2.9	28	79	3	92	35	20	8	34	1.84
8517197--8517246	24	2.1	23	82	14	57	50	16	2	32	1.56
8517375--8517407	16	2.1	16	100	0	66	42	18	0	39	1.50
8527238--8527268	12	2.6	12	94	0	53	90	6	3	0	0.55
8527437--8527467	2	15.5	2	93	0	53	3	48	0	48	1.17
8527769--8527814	23	2.0	23	87	8	67	47	0	0	52	1.00
8530049--8530074	4	6.5	4	100	0	52	23	0	26	50	1.50
8530218--8530243	2	13.0	2	100	0	52	50	0	0	50	1.00
8535873--8535911	8	4.9	8	93	0	69	2	20	0	76	0.90
8542976--8543046	22	3.2	20	70	18	52	59	0	0	40	0.98
8543064--8543102	20	2.0	20	85	10	53	61	5	2	30	1.31
8543069--8543127	27	2.3	25	85	5	73	54	10	1	33	1.44
8543319--8543348	4	7.5	4	100	0	60	23	0	0	76	0.78
8543344--8543381	3	12.7	3	100	0	76	31	0	0	68	0.90
8543764--8543833	33	2.1	35	89	5	108	58	1	0	40	1.07
8543777--8543847	35	2.0	36	83	5	90	61	0	0	38	0.96
8543912--8543972	26	2.4	25	77	20	63	50	4	0	44	1.23
8544262--8544304	13	3.3	13	73	0	50	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8544724--8544779	9	6.2	10	87	10	61	28	1	0	69	0.98
8544746--8544779	3	11.3	3	100	0	68	32	0	0	67	0.91
8545424--8545490	30	2.1	32	83	8	84	35	11	1	50	1.48
8546063--8546114	16	3.3	15	78	7	50	30	0	15	53	1.42
8546098--8546130	13	2.5	13	81	18	50	33	0	9	57	1.30
8548033--8548085	23	2.3	23	74	6	54	66	0	0	33	0.92
8549712--8549786	31	2.5	28	75	10	69	30	9	10	49	1.69
8555985--8556010	2	13.0	2	100	0	52	50	0	0	50	1.00
8557078--8557123	22	2.0	22	87	4	65	50	4	0	45	1.21
8557089--8557133	11	4.1	11	85	8	65	51	0	0	48	1.00
8559812--8559851	18	2.1	20	90	9	66	55	2	0	42	1.13
8559815--8559856	18	2.4	17	84	15	50	54	2	0	42	1.13
8562510--8562597	44	2.0	45	86	2	124	44	5	13	36	1.68
8573025--8573427	62	6.7	61	86	8	515	34	12	7	45	1.71
8573320--8573409	28	3.2	27	65	26	69	35	14	7	42	1.75
8573443--8573519	21	3.9	19	75	22	70	77	3	5	12	1.07
8573473--8573530	29	1.9	31	86	13	86	79	1	6	12	1.00
8573553--8573579	13	2.1	13	100	0	54	74	0	0	25	0.83
8574002--8574039	19	2.0	19	94	0	67	31	21	18	28	1.97
8574072--8574096	10	2.5	10	100	0	50	60	24	0	16	1.36
8574388--8574433	20	2.3	19	82	10	56	65	10	13	10	1.48
8574448--8574528	21	3.9	22	72	16	75	66	3	4	24	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8574661--8574701	14	2.9	14	85	10	57	82	4	0	12	0.81
8582989--8583040	26	2.0	26	100	0	104	53	0	3	42	1.19
8584587--8584627	20	2.0	21	86	9	59	21	2	24	51	1.60
8587472--8587497	12	2.2	12	100	0	52	76	0	0	23	0.78
8587446--8587501	19	2.7	20	83	13	60	69	0	0	30	0.89
8587940--8587989	14	3.4	14	81	10	55	54	6	2	38	1.37
8590739--8590804	29	2.3	29	76	5	71	31	6	43	18	1.74
8590910--8590962	23	2.3	23	93	3	88	22	3	1	71	1.12
8590877--8590944	10	7.6	9	72	22	54	23	1	4	70	1.13
8602860--8602899	18	2.3	17	87	8	62	25	0	0	75	0.81
8602858--8602939	15	5.2	16	78	11	64	24	2	1	71	1.05
8602873--8603073	4	51.2	4	65	15	71	26	4	3	65	1.28
8603863--8603994	8	14.6	8	69	24	61	19	3	2	74	1.08
8603868--8603938	14	5.2	14	72	14	51	23	1	2	71	1.07
8603863--8603903	4	10.8	4	84	5	50	21	0	0	78	0.76
8603924--8603989	6	10.5	6	73	15	53	13	6	1	78	1.00
8603932--8603972	21	1.9	22	85	5	57	12	9	2	75	1.13
8603926--8604004	26	3.2	24	77	21	74	15	6	1	77	1.03
8603925--8604000	33	2.3	32	82	6	89	14	6	1	77	1.03
8603863--8604004	18	8.1	18	67	22	61	19	4	2	73	1.09
8604024--8604476	119	3.8	116	82	7	498	42	6	13	37	1.70
8604027--8604475	240	1.9	238	84	5	609	42	6	13	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8610857--8610882	3	8.7	3	100	0	52	69	0	0	30	0.89
8611507--8611556	10	5.7	9	73	21	52	46	0	0	54	1.00
8613260--8613322	16	3.9	15	75	8	54	19	3	31	46	1.65
8613265--8613333	33	2.1	33	89	5	104	15	1	31	50	1.53
8613808--8613902	38	2.5	37	84	3	118	11	25	41	22	1.87
8614646--8614688	22	2.0	22	90	0	68	6	2	53	37	1.41
8614765--8614798	12	2.9	11	87	12	50	0	0	14	85	0.60
8614765--8614801	16	2.3	16	95	0	65	0	0	16	83	0.64
8615469--8615533	23	2.9	21	75	18	67	58	0	1	40	1.07
8615490--8615526	17	2.3	17	81	9	51	51	0	2	45	1.15
8618743--8618796	14	3.8	14	79	11	65	16	0	5	77	0.94
8618740--8618798	30	2.0	30	100	0	118	15	0	6	77	0.96
8618749--8618799	23	2.2	23	82	0	66	15	0	5	78	0.93
8618761--8618813	22	2.3	23	83	3	63	15	5	5	73	1.21
8618747--8618832	30	2.8	30	82	12	95	18	3	5	72	1.20
8618810--8618851	7	5.9	7	81	13	50	28	2	2	66	1.16
8618810--8618850	15	2.6	15	88	7	55	26	2	2	68	1.15
8618907--8618938	16	2.0	16	93	0	55	28	0	6	65	1.16
8618902--8618950	20	2.5	19	83	6	53	30	2	4	63	1.24
8618922--8619017	22	4.4	21	73	20	65	27	4	3	65	1.26
8619906--8620040	9	14.3	9	71	14	76	15	2	4	77	1.02
8619905--8619958	13	4.1	13	76	9	56	5	5	3	85	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8619916--8620049	27	4.9	27	74	13	87	17	2	4	76	1.06
8619915--8619962	23	2.1	23	81	11	55	8	4	4	83	0.90
8619909--8620055	28	5.1	28	71	12	86	16	3	4	76	1.08
8619993--8620055	5	12.8	5	72	21	53	19	3	0	77	0.90
8619993--8620049	15	3.8	15	88	9	89	19	1	0	78	0.83
8619994--8620040	21	2.3	21	89	7	71	19	0	0	80	0.70
8619930--8620054	9	13.3	9	76	15	69	19	2	4	74	1.09
8620082--8620244	62	2.7	58	80	10	184	44	6	10	38	1.65
8624130--8624194	31	2.2	29	83	5	76	78	0	15	6	0.94
8624160--8624213	28	1.9	28	84	0	72	79	0	14	5	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100