genome.fa.s168.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  73  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12982534--12982585	26	1.9	28	92	7	90	30	3	3	61	1.32
12988619--12988767	74	2.0	74	100	0	298	30	24	16	29	1.96
12989358--12989394	2	19.0	2	88	5	58	45	2	0	51	1.15
12990930--12991175	123	2.0	123	95	0	447	23	17	17	41	1.90
12993072--12993116	6	7.5	6	92	0	72	20	0	28	51	1.48
12997262--12997291	13	2.4	12	89	10	51	90	0	0	10	0.47
12999051--12999098	21	2.2	22	88	3	71	47	2	4	45	1.33
13000593--13000644	16	3.1	18	78	15	58	38	1	9	50	1.46
13007040--13007079	19	2.1	19	86	13	55	42	0	2	55	1.13
13011467--13011506	20	2.0	20	90	9	64	60	17	15	7	1.57
13012281--13012310	16	1.9	15	93	6	51	30	10	13	46	1.75
13017553--13017583	2	15.0	2	93	6	53	48	0	3	48	1.17
13018463--13018496	17	1.9	18	88	5	52	44	11	11	32	1.77
13020835--13020867	2	16.5	2	100	0	66	51	0	0	48	1.00
13027516--13027560	15	3.3	14	76	23	51	42	0	17	40	1.50
13027688--13027718	15	2.1	15	93	0	53	48	29	3	19	1.64
13027795--13027826	16	2.0	16	93	0	55	46	6	0	46	1.27
13028511--13028544	3	11.3	3	100	0	68	32	0	0	67	0.91
13032248--13032272	13	1.9	13	100	0	50	60	8	0	32	1.26
13031702--13032486	390	2.0	385	83	7	998	42	9	8	39	1.67
13035988--13036073	41	2.1	41	86	4	120	45	10	8	36	1.68
13037177--13037216	19	2.1	19	86	9	55	20	15	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13038651--13038815	63	2.6	63	79	10	176	40	10	13	35	1.79
13038076--13038757	369	1.9	367	82	2	857	39	11	11	37	1.77
13038635--13038782	64	2.3	64	79	7	169	36	7	18	37	1.79
13038815--13039026	62	3.4	61	75	10	196	38	15	12	34	1.84
13038816--13039130	62	5.0	61	72	17	182	38	13	13	33	1.85
13039463--13039515	17	3.0	17	80	5	61	66	1	7	24	1.28
13039445--13039567	45	2.9	42	74	16	110	69	1	6	21	1.19
13039496--13039597	53	1.9	53	82	11	129	71	0	4	22	1.11
13039533--13039597	26	2.4	27	89	5	105	73	0	3	23	0.97
13039549--13039605	18	3.1	18	72	22	55	75	0	5	19	0.99
13039549--13039616	29	2.4	30	80	14	81	76	0	4	19	0.95
13039487--13039614	25	5.1	23	68	26	64	72	0	5	21	1.09
13043272--13043506	124	1.9	125	84	4	314	35	12	13	38	1.82
13043574--13043732	63	2.5	64	82	8	177	35	14	14	35	1.87
13043796--13044415	293	2.1	292	83	4	761	37	13	14	34	1.85
13044345--13044492	62	2.4	63	79	5	167	41	16	12	29	1.85
13048313--13048349	15	2.5	15	90	0	56	21	8	8	62	1.49
13049447--13049488	16	2.6	16	96	0	75	21	2	7	69	1.25
13051767--13051800	18	1.9	17	88	5	50	76	8	11	2	1.12
13052307--13052606	124	2.4	124	80	6	304	35	13	11	40	1.80
13052949--13053007	29	2.1	28	81	9	66	33	1	1	62	1.15
13055191--13055246	3	19.3	3	78	7	62	37	3	0	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13055190--13055252	9	6.6	9	75	20	56	38	4	0	57	1.20
13067543--13068124	119	4.9	118	78	4	474	18	20	15	45	1.85
13067667--13068124	238	1.9	238	82	4	575	17	20	16	45	1.86
13067918--13068163	119	2.1	118	80	5	273	19	20	16	43	1.87
13068443--13068484	15	2.7	15	85	10	50	19	7	0	73	1.05
13068725--13068769	16	3.0	15	83	6	56	57	0	17	24	1.40
13071598--13071712	18	6.7	18	79	9	125	33	37	5	24	1.78
13071598--13071717	33	3.5	33	75	12	109	33	37	5	24	1.77
13079060--13079128	15	4.4	16	70	24	58	39	1	0	59	1.06
13084537--13084952	166	2.5	166	83	2	539	21	7	22	48	1.75
13093482--13093512	6	5.2	6	100	0	62	83	0	0	16	0.64
13093578--13093611	17	2.0	17	94	0	59	17	20	5	55	1.62
13098468--13098580	51	2.3	50	87	9	160	29	12	3	54	1.54
13098610--13098694	36	2.4	37	82	7	95	30	17	4	47	1.68
13103290--13103320	2	15.5	2	93	0	53	48	0	48	3	1.17
13106900--13106948	24	2.0	25	88	7	75	61	0	4	34	1.15
13108343--13108588	54	4.5	54	74	10	205	24	13	11	50	1.74
13108343--13108515	58	3.1	57	71	16	155	23	12	10	52	1.71
13108343--13108609	52	5.0	53	72	11	193	25	13	11	49	1.77
13110098--13110138	21	2.0	21	85	9	57	51	2	2	43	1.28
13110397--13110421	12	2.1	12	100	0	50	48	0	8	44	1.32
13111643--13111728	21	4.1	21	80	4	95	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13112626--13112703	39	2.0	38	87	7	113	30	26	8	33	1.87
13117503--13117556	21	2.6	20	82	8	63	24	25	24	25	2.00
13120491--13120559	34	2.1	33	86	5	95	47	14	7	30	1.71
13120776--13120856	8	9.0	8	74	19	63	76	1	6	16	1.05
13121992--13122144	64	2.4	64	79	6	159	46	12	16	24	1.82
13133950--13133997	19	2.6	18	81	15	53	75	0	6	18	1.01
13133951--13134014	20	3.2	20	78	10	69	75	0	4	20	0.99
13133955--13134052	19	5.3	19	69	20	64	73	0	6	20	1.04
13133962--13134051	12	7.8	11	71	17	51	73	0	5	21	1.03
13134354--13134403	10	5.2	10	85	4	59	38	8	6	48	1.57
13134828--13134853	3	8.7	3	100	0	52	34	0	30	34	1.58
13134858--13134892	3	11.7	3	93	0	61	34	28	0	37	1.58
13144472--13144499	2	14.0	2	100	0	56	50	0	0	50	1.00
13152920--13153002	34	2.5	35	78	7	100	40	16	9	32	1.81
13154105--13154139	17	2.1	17	94	0	61	40	5	17	37	1.73
13154194--13154222	11	2.5	12	94	5	51	51	0	0	48	1.00
13154477--13154532	20	2.8	20	97	2	103	37	3	0	58	1.15
13156196--13156225	14	2.1	14	100	0	60	23	33	6	36	1.81
13156943--13157000	20	2.9	20	85	10	82	50	10	5	34	1.59
13156967--13157051	34	2.5	34	80	12	95	55	10	3	30	1.51
13157042--13157125	20	4.2	20	73	14	57	54	8	7	29	1.57
13156961--13157070	36	3.1	34	75	12	107	53	10	4	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13157072--13157110	18	2.2	18	95	0	69	51	7	5	35	1.53
13157211--13157321	23	4.5	24	70	10	82	52	10	6	30	1.61
13157356--13157472	32	3.6	32	76	13	130	47	10	8	34	1.68
13157625--13157658	16	2.1	16	89	10	52	76	8	0	14	1.01
13158540--13158580	16	2.6	16	88	11	66	4	9	0	85	0.73
13158600--13158691	19	4.9	18	71	9	67	56	13	3	27	1.52
13158645--13158722	32	2.4	32	78	4	86	57	10	5	26	1.52
13158996--13159086	43	2.1	41	86	9	121	43	15	12	28	1.82
13162361--13162404	16	2.7	16	85	3	61	6	13	0	79	0.92
13162420--13162456	19	2.0	18	94	5	65	70	10	0	18	1.16
13172350--13172413	30	2.1	30	97	0	119	28	18	14	39	1.90
13175452--13175492	20	2.0	20	85	0	55	43	2	9	43	1.50
13175500--13175557	13	4.5	13	71	0	53	63	1	1	32	1.14
13175490--13175544	26	2.1	26	86	0	74	56	1	1	40	1.21
13175550--13175587	20	1.9	19	89	5	58	57	0	2	39	1.12
13175597--13175644	15	3.1	15	78	3	51	50	2	4	43	1.33
13177105--13177136	2	16.0	2	93	0	55	50	3	0	46	1.17
13179790--13179819	12	2.5	12	88	0	51	46	0	10	43	1.37
13185639--13185709	18	3.9	18	75	0	70	28	7	32	32	1.84
13187016--13187053	18	2.0	19	85	10	51	50	5	0	44	1.24
13189215--13189247	14	2.3	15	94	5	59	57	0	6	36	1.23
13188946--13190098	577	2.0	578	89	4	1750	46	9	4	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13190153--13190181	15	1.9	15	100	0	58	20	62	3	13	1.46
13194377--13194414	17	2.2	18	85	4	51	36	5	2	55	1.37
13196742--13196808	10	6.3	10	73	19	55	4	11	1	82	0.89
13200616--13200641	4	6.5	4	100	0	52	23	0	0	76	0.78
13203107--13203155	22	2.3	20	83	13	62	38	0	6	55	1.25
13205283--13205330	3	16.0	3	100	0	96	66	0	0	33	0.92
13207094--13207151	30	2.0	28	86	6	80	60	8	6	24	1.51
13208603--13209174	305	1.9	305	81	8	707	35	13	14	36	1.85
13213261--13214183	187	5.0	185	79	5	902	39	12	12	35	1.80
13214073--13214307	125	1.9	125	84	6	316	38	12	13	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100