genome.fa.s168.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  7  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1145230--1145401	42	4.0	43	80	11	151	39	20	15	24	1.91
1145279--1145432	42	3.7	42	84	7	181	36	21	14	27	1.93
1146428--1146486	17	3.6	16	80	15	59	10	15	0	74	1.06
1146452--1146507	10	5.6	10	82	14	71	10	14	0	75	1.06
1146446--1146507	31	2.0	32	90	3	99	11	14	0	74	1.08
1146462--1146502	21	1.9	22	90	5	66	12	14	0	73	1.11
1159290--1159345	27	2.1	27	100	0	112	35	33	7	23	1.82
1161532--1161618	27	3.2	27	72	15	97	36	0	10	52	1.36
1161520--1161648	55	2.4	54	93	5	217	35	0	9	55	1.32
1161546--1161632	28	3.1	28	67	20	83	37	0	9	52	1.33
1161652--1161709	21	2.8	21	89	0	89	37	3	8	50	1.50
1162038--1162372	22	14.9	22	72	9	174	41	7	6	44	1.58
1162038--1162620	44	13.1	44	68	10	200	39	8	6	46	1.59
1162109--1162296	66	2.8	65	83	4	200	39	4	8	47	1.55
1162315--1162663	22	15.8	22	69	12	83	38	10	4	46	1.58
1162677--1162733	11	5.2	11	75	8	62	35	1	5	57	1.31
1162677--1162739	22	2.9	22	83	9	83	36	1	4	57	1.30
1163247--1163289	22	2.0	22	90	0	68	48	11	2	37	1.52
1163528--1163573	22	2.1	21	84	11	58	36	4	6	52	1.47
1163533--1163581	22	2.2	22	82	7	55	38	6	6	48	1.53
1163715--1163796	22	3.8	22	81	3	94	41	9	1	47	1.44
1163712--1163796	43	2.0	44	85	2	118	40	9	2	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163724--1163796	11	6.7	11	67	14	53	42	9	1	46	1.45
1163936--1164006	22	3.2	22	76	4	63	36	8	2	52	1.47
1166421--1166476	16	3.5	17	81	11	66	51	5	0	42	1.24
1166431--1166478	15	3.1	15	78	6	51	56	6	0	37	1.25
1172944--1173060	34	3.4	34	92	2	198	35	12	25	26	1.92
1175436--1176109	191	3.6	186	77	7	470	35	12	13	38	1.83
1175608--1176102	189	2.6	189	80	7	515	36	13	11	37	1.81
1179575--1179618	23	2.0	20	87	12	61	31	9	0	59	1.29
1179628--1179663	18	1.9	19	88	5	56	41	5	0	52	1.24
1180837--1180874	19	2.0	19	89	0	58	31	10	2	55	1.48
1194757--1194797	21	2.0	21	85	9	57	63	2	4	29	1.28
1194991--1195028	15	2.6	14	91	4	58	78	0	0	21	0.74
1194992--1195029	14	2.5	15	87	12	60	78	0	0	21	0.74
1195754--1195889	32	4.6	28	77	13	107	44	0	2	52	1.21
1195754--1195866	32	3.5	31	82	5	145	45	0	2	51	1.21
1208444--1208482	19	2.0	20	90	5	62	12	12	15	58	1.62
1222504--1222631	39	3.3	39	85	2	177	15	1	61	21	1.42
1222527--1222648	39	3.0	43	69	17	100	17	0	61	20	1.39
1222865--1222901	20	1.9	20	88	5	58	35	2	5	56	1.36
1223125--1223173	25	1.9	26	91	4	82	46	2	10	40	1.49
1226581--1226629	6	8.2	6	88	0	71	22	0	48	28	1.50
1226973--1227097	18	6.9	18	73	13	114	32	36	4	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226977--1227019	21	2.0	21	95	0	77	25	44	2	27	1.66
1240657--1240859	99	2.1	99	100	0	406	25	13	17	43	1.86
1242196--1242458	138	1.9	138	87	0	382	19	24	18	36	1.94
1245557--1246585	219	4.7	218	90	4	1452	28	21	16	33	1.95
1245557--1246585	436	2.4	429	88	3	1467	28	21	16	33	1.95
1255916--1256010	48	2.0	48	87	0	136	47	14	15	22	1.82
1259900--1259994	48	2.0	48	93	0	163	25	12	18	43	1.86
1266860--1267416	58	9.7	57	83	5	541	35	13	6	44	1.70
1266858--1267419	117	4.9	116	83	6	667	35	13	7	44	1.71
1267434--1267586	5	30.6	5	70	19	81	73	3	3	18	1.12
1267434--1267537	11	8.5	12	72	17	65	77	1	5	14	1.03
1267429--1267531	38	2.7	37	83	10	111	77	1	5	14	1.04
1267434--1267590	11	14.1	11	70	20	55	73	3	3	19	1.13
1267555--1267597	15	2.9	14	80	13	50	74	0	0	25	0.82
1268119--1268165	13	3.8	12	83	8	58	57	12	4	25	1.54
1268588--1268652	5	12.8	5	72	15	53	78	3	1	16	0.96
1268585--1268675	6	15.2	6	73	15	73	76	3	2	17	1.02
1268580--1268652	11	6.5	11	77	12	69	76	2	2	17	1.02
1268580--1268675	51	1.9	51	85	4	133	76	3	3	17	1.06
1268870--1269154	84	3.3	84	77	14	271	35	24	18	21	1.96
1268870--1269154	43	6.6	42	79	14	271	35	24	18	21	1.96
1276570--1276633	32	2.0	32	96	0	119	35	18	4	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282057--1282160	51	2.0	52	90	5	167	43	8	20	27	1.81
1287086--1287459	188	2.0	187	85	1	498	33	6	15	43	1.74
1288957--1289097	70	2.0	69	90	4	221	26	24	12	36	1.90
1289501--1289544	17	2.6	16	85	7	52	59	0	4	36	1.18
1299667--1299730	31	2.1	31	93	0	110	40	10	20	28	1.86
1300104--1300157	27	2.0	27	85	7	74	37	5	7	50	1.54
1300131--1300221	21	4.3	21	76	8	78	36	8	12	42	1.73
1300261--1300300	21	1.9	21	85	10	55	30	7	12	50	1.68
1300603--1300666	22	2.9	21	79	9	74	45	7	4	42	1.54
1300652--1300777	22	5.7	22	81	5	112	37	10	7	44	1.68
1300687--1300777	44	2.1	44	87	4	130	36	10	7	45	1.68
1300815--1300881	30	2.3	29	77	10	73	47	10	1	40	1.47
1300846--1300952	22	4.9	22	77	8	110	41	9	1	47	1.46
1300846--1300930	44	1.9	44	90	4	136	41	9	2	47	1.49
1300846--1300952	44	2.4	44	84	3	135	41	9	1	47	1.46
1301052--1301107	21	2.6	23	77	11	73	41	10	3	44	1.56
1301024--1301107	43	1.9	44	85	2	116	41	11	3	42	1.59
1304868--1304935	19	3.7	18	74	24	61	77	0	13	8	0.98
1304870--1304935	21	3.5	19	79	16	68	80	0	12	7	0.91
1304880--1304931	14	3.4	14	78	19	59	78	0	11	9	0.95
1304880--1304933	16	3.4	16	83	14	67	79	0	11	9	0.93
1304868--1304939	18	4.2	17	72	22	62	76	0	13	9	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304875--1304946	17	4.3	17	75	18	71	76	0	13	9	1.02
1305942--1306370	41	10.1	41	79	7	245	26	14	18	40	1.89
1305971--1306400	85	5.0	86	81	8	362	25	15	18	40	1.89
1305991--1306386	41	9.2	43	79	7	321	25	14	17	42	1.87
1306009--1306391	130	3.0	126	81	8	398	25	14	17	42	1.88
1306640--1306672	7	4.9	7	96	3	59	15	0	9	75	1.03
1306632--1306673	14	3.3	13	87	12	61	14	0	7	78	0.95
1306680--1306749	4	18.0	4	75	16	51	31	1	1	65	1.10
1306680--1306854	20	8.2	22	68	22	72	31	3	1	63	1.21
1306692--1306854	3	50.3	3	71	20	73	31	3	1	62	1.23
1306680--1306810	59	2.2	59	78	9	142	31	3	1	63	1.21
1306680--1306811	33	4.1	31	80	12	124	31	3	1	62	1.22
1306688--1306828	26	5.2	26	73	21	105	31	3	1	63	1.20
1306684--1306827	17	8.8	16	71	15	66	31	3	1	63	1.20
1306788--1306868	34	2.4	34	85	0	99	28	3	1	66	1.16
1306731--1306854	56	2.2	57	83	8	148	31	4	1	62	1.23
1307403--1307445	15	2.9	15	76	13	52	48	0	51	0	1.00
1307712--1307801	10	8.6	10	74	19	51	26	1	4	67	1.16
1307770--1307813	5	8.4	5	87	7	61	15	0	2	81	0.78
1307773--1307813	11	3.8	11	87	12	59	14	0	2	82	0.76
1307764--1307813	16	3.1	16	91	8	75	16	2	2	80	0.91
1307770--1307813	21	2.1	21	91	8	72	15	0	2	81	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307827--1308225	57	6.8	58	87	7	549	40	6	14	39	1.72
1307827--1308225	115	3.4	117	86	5	533	40	6	14	39	1.72
1308277--1308318	21	2.0	20	86	4	57	7	14	0	78	0.95
1308757--1308809	22	2.4	22	87	0	79	33	9	7	49	1.64
1308835--1308996	22	7.6	21	70	14	82	40	9	3	46	1.54
1308889--1308921	17	1.9	17	93	0	57	33	9	0	57	1.30
1308936--1309020	22	3.9	22	80	6	100	43	8	2	45	1.46
1309222--1309264	22	2.0	22	95	0	77	37	9	2	51	1.47
1311692--1311773	32	2.6	31	82	5	103	50	3	0	46	1.19
1313757--1313885	69	1.9	69	90	3	206	25	24	10	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100