genome.fa.s168.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  94  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16136015--16138315	180	12.8	180	76	5	1834	40	8	10	41	1.69
16136087--16138274	541	4.0	536	78	6	1988	40	8	10	41	1.70
16138314--16138865	181	3.0	179	79	5	565	41	8	9	41	1.67
16138834--16138934	33	2.9	35	78	15	127	45	2	1	49	1.28
16138839--16138965	36	3.6	34	81	11	132	45	3	3	48	1.34
16139199--16143807	181	25.7	180	74	8	3021	41	10	8	39	1.69
16138930--16152578	539	25.3	534	70	12	5044	41	10	8	39	1.69
16138930--16143807	715	6.8	711	76	8	3315	41	10	8	39	1.69
16142780--16142829	18	2.8	18	70	14	50	40	4	8	48	1.51
16143676--16143708	18	1.9	17	88	11	50	42	6	3	48	1.43
16144174--16144447	138	2.0	138	81	6	324	45	8	9	36	1.68
16144311--16144972	181	3.6	181	72	12	479	43	10	7	38	1.67
16145032--16145945	180	5.0	179	74	9	692	39	9	9	41	1.69
16145660--16145701	18	2.4	18	84	15	61	42	9	2	45	1.49
16146310--16146848	182	3.0	176	75	8	505	41	12	7	38	1.72
16146744--16146966	118	1.9	114	81	7	261	43	10	6	40	1.64
16146409--16147331	477	1.9	480	80	4	1085	42	11	7	38	1.70
16146858--16155451	181	47.6	178	73	9	5097	41	10	8	39	1.69
16152998--16153198	105	1.9	105	81	3	244	37	9	5	47	1.61
16153373--16155367	360	5.5	360	75	9	888	41	10	8	40	1.69
16146858--16155465	539	15.9	534	73	10	4842	41	10	8	40	1.69
16155712--16159558	361	10.8	363	73	11	1158	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16156610--16156645	16	2.1	17	90	10	56	38	11	5	44	1.63
16155463--16159558	541	7.7	539	74	9	2021	41	9	8	39	1.69
16155463--16157773	180	12.9	180	76	7	1733	41	10	8	39	1.70
16158203--16158527	170	1.9	170	81	5	397	41	8	8	41	1.66
16158663--16158696	16	2.1	17	88	5	52	50	2	5	41	1.42
16158372--16159901	181	8.7	175	73	9	1031	41	9	8	40	1.68
16158442--16159558	174	6.3	181	76	6	564	41	9	8	40	1.68
16159804--16160031	123	1.9	123	82	0	294	42	8	7	42	1.63
16159942--16163427	181	19.6	176	70	12	1129	43	9	7	39	1.66
16160883--16160924	19	2.3	19	87	4	59	54	4	4	35	1.42
16159927--16162131	181	12.3	181	74	8	1352	43	9	7	39	1.65
16161993--16162287	150	1.9	149	83	10	380	44	9	9	36	1.69
16162143--16163427	180	7.2	181	72	10	904	42	10	7	40	1.68
16162917--16162948	17	1.9	16	93	6	55	43	3	3	50	1.33
16170316--16174778	357	12.5	354	87	3	5598	34	12	16	35	1.87
16172854--16172878	13	1.9	13	100	0	50	40	0	12	48	1.40
16175066--16175092	12	2.2	12	100	0	54	25	33	0	40	1.56
16177067--16177119	21	2.5	21	90	0	79	32	5	26	35	1.80
16177080--16177122	21	2.0	21	100	0	86	27	9	23	39	1.85
16182250--16182494	134	1.8	134	83	1	330	37	20	15	26	1.92
16182434--16182651	99	2.2	99	85	0	310	39	17	13	29	1.87
16183271--16183311	17	2.5	17	88	11	59	51	4	2	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16183273--16183313	11	3.7	11	90	0	55	51	2	2	43	1.28
16184040--16184066	13	2.1	13	100	0	54	48	0	22	29	1.51
16184512--16184604	44	2.1	44	86	2	125	34	9	11	44	1.74
16184767--16184812	24	1.9	24	86	8	67	52	2	0	45	1.13
16192336--16192368	10	3.2	11	91	8	52	57	0	0	42	0.98
16233391--16235582	439	5.0	438	95	0	3798	28	15	18	38	1.91
16247207--16247350	45	3.2	45	72	2	119	26	22	27	22	1.99
16247780--16247840	26	2.3	27	83	11	72	63	6	3	26	1.34
16252586--16252676	45	2.0	45	80	0	101	26	29	17	26	1.98
16264247--16264290	22	2.0	23	95	4	81	25	22	25	27	2.00
16270338--16270430	45	2.1	45	83	4	116	23	27	19	29	1.98
16270358--16270444	45	1.9	45	83	0	111	19	27	22	29	1.98
16270420--16270467	24	2.0	24	91	0	78	12	33	20	33	1.90
16275762--16275793	14	2.3	14	94	0	55	53	6	9	31	1.58
16276437--16276536	34	2.9	33	81	8	112	44	11	8	37	1.69
16278407--16278457	26	2.0	25	92	3	84	64	1	15	17	1.38
16284300--16284353	28	1.9	28	96	0	99	18	7	7	66	1.40
16286586--16286619	17	2.0	17	88	0	50	5	11	5	76	1.14
16288237--16288405	55	3.1	55	79	5	180	27	10	13	49	1.74
16288267--16288417	55	2.7	55	84	2	187	27	7	13	51	1.67
16288695--16288729	15	2.3	15	90	0	52	68	11	5	14	1.37
16292735--16292872	63	2.2	63	84	3	179	38	15	13	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16292735--16292877	64	2.3	64	86	2	191	37	16	13	32	1.88
16292844--16292981	64	2.2	60	80	5	150	31	15	10	43	1.79
16293007--16293084	36	2.2	36	83	4	95	46	10	11	32	1.74
16293612--16293666	21	2.7	20	77	11	58	29	32	20	18	1.96
16299640--16299799	73	2.2	73	87	1	232	29	21	26	22	1.99
16299640--16299820	73	2.5	71	81	4	209	29	19	26	24	1.99
16302564--16302589	13	2.0	13	100	0	52	53	7	15	23	1.67
16304397--16304568	62	2.8	61	76	10	170	36	12	11	38	1.80
16304460--16304624	62	2.7	60	78	7	172	36	13	11	38	1.82
16304460--16304684	121	1.9	121	81	7	278	36	12	12	39	1.81
16309625--16309652	2	14.0	2	100	0	56	50	0	0	50	1.00
16312232--16312280	22	2.3	22	82	3	64	59	2	4	34	1.28
16312521--16312571	18	2.7	19	81	9	59	60	1	0	37	1.08
16312521--16312564	10	4.4	10	80	11	54	56	2	0	40	1.11
16312545--16312580	18	2.0	18	88	0	54	69	0	2	27	1.02
16316521--16317847	668	2.0	669	96	0	2458	35	14	13	36	1.85
16318204--16318242	17	2.4	17	86	4	53	30	0	2	66	1.05
16318524--16318573	20	2.5	20	90	0	73	4	26	52	18	1.63
16319372--16319451	19	4.2	20	82	9	73	15	6	6	72	1.25
16319393--16319451	18	3.2	18	90	2	91	16	5	5	72	1.20
16319372--16319451	37	2.1	38	86	6	110	15	6	6	72	1.25
16319612--16320061	48	9.4	48	81	9	460	35	22	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16319593--16320061	141	3.3	140	84	6	586	34	23	14	27	1.94
16334180--16334209	16	1.9	16	93	6	53	30	0	3	66	1.07
16334184--16334218	18	1.9	18	88	0	52	25	0	2	71	1.00
16334818--16334860	18	2.4	18	81	11	54	6	2	16	74	1.14
16337320--16337361	19	2.2	19	91	0	66	11	4	11	71	1.29
16337495--16341906	360	12.0	360	70	13	1485	41	9	8	40	1.68
16337499--16341889	180	24.0	182	68	15	1294	41	9	8	40	1.68
16339503--16339578	34	2.2	35	92	2	127	40	11	3	43	1.60
16339733--16339766	17	2.1	17	88	5	52	38	14	0	47	1.45
16339913--16339945	17	2.0	17	88	5	50	39	9	3	48	1.50
16339551--16341906	181	13.1	180	74	10	1119	41	9	8	41	1.67
16340885--16341906	361	2.8	357	77	7	807	41	8	8	41	1.65
16343650--16353331	181	53.8	180	73	9	5029	41	9	8	40	1.68
16343650--16353331	363	26.9	360	70	11	2622	41	9	8	40	1.68
16343509--16353303	540	18.1	533	72	10	3838	41	9	8	40	1.68
16349036--16349130	33	2.9	32	67	14	95	36	13	8	41	1.75
16351156--16351473	162	2.0	163	84	1	424	44	8	10	37	1.69
16352079--16352129	18	2.8	19	80	17	72	41	11	3	43	1.60
16353382--16355058	361	4.7	353	76	7	1149	41	9	8	40	1.68
16353382--16355052	181	9.4	180	75	7	1137	41	9	8	40	1.68
16354958--16355413	226	2.0	225	88	1	680	39	9	11	39	1.75
16355197--16355994	181	4.4	178	76	9	600	42	10	9	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16355539--16356487	490	1.9	486	80	4	1086	43	10	7	38	1.67
16356168--16356825	357	1.8	358	81	3	824	40	10	7	41	1.67
16356047--16356871	181	4.6	179	76	7	658	42	10	7	40	1.68
16356790--16356960	86	2.0	86	89	2	263	45	6	7	40	1.58
16356876--16359646	180	15.3	180	71	10	1134	40	10	8	40	1.70
16356944--16363378	181	35.4	179	69	13	2222	41	10	7	39	1.69
16357667--16357717	17	2.8	19	77	17	63	39	9	5	45	1.62
16356937--16358959	536	3.8	526	77	7	1608	41	11	8	39	1.70
16359510--16359754	133	1.8	133	83	3	323	39	9	6	43	1.65
16359374--16359964	311	1.9	315	87	3	827	43	9	6	39	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100