genome.fa.s168.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  25  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4621348--4621404	12	4.7	11	81	12	51	19	1	1	77	0.95
4621344--4621438	26	3.5	26	76	13	77	24	1	2	72	1.02
4621382--4621441	6	9.7	6	85	10	50	26	0	1	71	0.95
4621382--4621479	38	2.5	37	79	11	90	27	1	4	67	1.15
4621527--4621574	21	2.4	19	75	21	53	31	6	2	60	1.33
4622420--4622507	18	5.1	18	72	14	53	22	4	2	70	1.17
4622398--4622447	4	12.8	4	76	19	52	22	4	2	72	1.12
4622465--4622507	17	2.6	17	86	13	63	16	6	0	76	0.99
4622545--4623006	59	7.7	59	90	4	728	44	7	14	33	1.73
4622544--4623006	119	3.9	118	90	5	734	44	7	14	33	1.73
4625062--4625113	23	2.2	24	83	12	65	34	0	5	59	1.21
4625120--4625149	4	7.2	4	92	7	51	73	0	0	26	0.84
4625570--4625848	153	1.8	153	89	3	436	45	4	8	41	1.54
4629901--4629925	12	2.1	12	100	0	50	68	0	0	32	0.90
4630151--4630186	17	2.0	17	89	10	54	27	0	5	66	1.13
4631359--4631410	17	3.1	17	88	2	79	57	0	0	42	0.98
4635524--4635567	22	2.0	23	86	13	65	63	18	13	4	1.46
4646955--4646998	23	2.0	22	86	4	61	50	0	0	50	1.00
4646948--4647032	41	2.1	41	80	12	95	49	2	1	47	1.22
4649166--4649211	24	2.0	23	86	4	65	63	2	2	32	1.19
4649619--4649669	20	2.5	21	78	12	61	45	0	3	50	1.20
4659751--4659783	16	2.1	16	100	0	66	36	6	12	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660282--4660315	17	2.0	17	100	0	68	17	11	23	47	1.81
4661305--4661352	15	3.3	15	80	11	55	66	0	2	31	1.03
4664009--4664084	22	3.5	22	67	3	64	39	25	11	23	1.89
4663999--4664084	43	2.0	43	100	0	172	37	25	11	25	1.90
4663999--4664064	21	3.1	21	65	4	60	33	27	12	27	1.92
4665581--4665798	117	1.9	117	99	0	427	21	34	26	17	1.95
4668797--4668828	15	2.0	17	88	11	50	40	12	0	46	1.42
4675010--4675049	20	2.0	20	100	0	80	40	5	30	25	1.77
4683073--4683119	23	2.0	23	91	0	76	61	17	14	6	1.53
4692198--4692246	15	3.3	15	74	5	55	42	4	10	42	1.57
4693766--4693842	10	7.2	11	72	20	65	40	1	7	50	1.39
4693766--4693841	21	3.6	20	82	8	80	40	1	6	51	1.36
4693935--4693988	27	2.0	27	85	0	72	38	5	1	53	1.35
4693980--4694100	21	5.8	21	74	3	93	35	5	12	46	1.66
4693963--4694270	42	7.3	41	69	16	155	36	6	10	45	1.66
4694161--4694265	21	5.0	21	71	2	75	33	5	12	48	1.64
4694260--4694309	20	2.4	21	80	3	57	36	6	6	52	1.51
4697577--4697637	19	3.3	19	80	15	65	75	11	1	11	1.12
4697572--4697623	26	2.0	25	85	10	70	75	11	0	13	1.06
4698537--4698561	12	2.1	12	100	0	50	16	0	0	84	0.63
4698929--4698953	10	2.5	10	100	0	50	76	0	16	8	1.02
4699103--4699140	9	4.3	9	83	6	51	81	2	0	15	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4699107--4699140	17	2.0	17	88	0	50	82	2	0	14	0.79
4701862--4701904	21	2.0	21	81	0	50	79	2	9	9	1.03
4707084--4707394	159	2.0	158	89	4	475	29	18	17	34	1.94
4710911--4711329	47	8.8	48	78	6	397	28	11	19	40	1.87
4710911--4711328	94	4.4	95	82	3	484	28	11	19	40	1.87
4710911--4711327	141	2.9	140	79	4	460	28	11	19	40	1.87
4713072--4713114	20	2.1	21	91	4	70	72	2	0	25	0.97
4719373--4719410	18	2.2	18	85	4	51	23	23	21	31	1.98
4725035--4725865	215	3.9	217	92	2	1352	41	8	6	43	1.61
4729838--4729904	30	2.2	30	89	0	107	25	16	11	46	1.81
4736721--4736767	18	2.6	18	96	0	85	23	36	10	29	1.89
4738198--4738264	23	3.1	22	77	12	59	28	1	4	65	1.21
4738238--4738270	17	2.1	17	88	11	52	30	0	0	69	0.88
4738372--4738403	15	2.2	15	94	5	57	0	9	0	90	0.45
4739268--4739319	25	2.1	24	86	10	70	19	0	1	78	0.84
4739274--4739402	17	7.7	17	71	14	65	17	3	3	75	1.09
4739268--4739319	13	4.2	12	85	9	70	19	0	1	78	0.84
4739285--4739319	4	8.5	4	87	6	52	22	0	0	77	0.78
4739343--4739402	5	11.4	5	77	13	50	11	5	1	81	0.91
4739351--4739413	25	2.5	26	80	12	78	12	4	1	80	0.93
4739442--4739658	58	3.7	58	88	4	330	46	7	12	33	1.71
4739441--4739658	117	1.9	117	90	3	350	46	7	12	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4742869--4742939	33	2.2	33	80	10	83	78	0	14	7	0.94
4744167--4744539	42	9.1	41	88	8	548	23	17	21	37	1.94
4744167--4744539	82	4.6	82	93	3	596	23	17	21	37	1.94
4744167--4744539	124	3.0	121	90	6	567	23	17	21	37	1.94
4744547--4744648	1	102.0	1	74	0	87	87	9	0	2	0.65
4744547--4744648	10	10.4	10	80	14	115	87	9	0	2	0.65
4744547--4744648	19	5.8	17	80	10	109	87	9	0	2	0.65
4744548--4744648	32	3.1	32	85	4	132	87	9	0	2	0.65
4744874--4744940	23	3.1	22	77	12	59	28	1	4	65	1.21
4744914--4744946	17	2.1	17	88	11	52	30	0	0	69	0.88
4745489--4745538	20	2.5	20	83	0	73	40	24	22	14	1.90
4754067--4754091	2	12.5	2	100	0	50	52	0	0	48	1.00
4756675--4756740	21	3.1	21	78	8	80	33	0	7	59	1.26
4756684--4756741	31	1.9	29	82	6	71	36	0	5	58	1.20
4756825--4756897	21	3.5	21	75	0	74	31	5	16	46	1.70
4756912--4757010	20	5.2	20	75	14	100	35	9	8	47	1.65
4756878--4757072	103	1.9	104	89	5	306	36	7	7	47	1.61
4757168--4757218	21	2.4	22	84	15	79	41	5	3	49	1.45
4757288--4757338	21	2.4	21	80	0	57	37	1	7	52	1.42
4757308--4757363	27	2.2	25	87	6	76	30	1	12	55	1.47
4757337--4757456	21	5.8	21	74	15	99	34	5	10	50	1.60
4757880--4757912	5	6.6	5	100	0	66	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4762655--4762719	25	2.7	23	80	17	78	41	18	7	32	1.79
4763915--4763982	35	1.9	35	100	0	136	23	30	0	45	1.53
4771287--4771344	3	19.3	3	78	7	64	60	1	5	32	1.29
4771281--4771344	27	2.5	26	82	9	87	59	1	4	34	1.28
4773560--4773598	2	20.0	2	89	5	62	48	2	0	48	1.15
4779990--4780031	19	2.2	19	100	0	84	33	14	33	19	1.91
4787009--4787052	20	2.2	20	91	0	70	34	0	0	65	0.93
4789216--4789428	107	2.0	108	90	0	338	44	7	6	42	1.57
4789924--4789975	23	2.2	24	83	12	65	57	5	1	34	1.33
4792412--4792459	22	2.2	22	85	7	62	50	6	4	39	1.47
4792421--4792483	22	2.9	20	81	13	63	47	3	6	42	1.44
4792465--4792742	22	12.8	22	66	13	110	53	3	7	34	1.46
4792412--4792742	65	5.1	66	71	9	187	52	3	7	35	1.48
4792555--4792584	14	2.1	15	93	6	53	63	6	0	30	1.20
4792471--4792630	87	1.8	87	80	7	191	52	4	7	35	1.50
4792651--4792742	11	8.5	11	72	7	71	54	2	7	35	1.41
4796354--4796402	22	2.2	22	82	7	64	53	8	6	32	1.55
4796371--4796435	33	2.0	33	84	0	85	49	9	6	35	1.60
4796470--4796525	22	2.5	22	82	0	67	44	7	14	33	1.72
4796605--4796710	43	2.4	44	84	4	135	42	10	11	35	1.75
4796644--4796705	22	2.8	22	80	0	79	43	8	11	37	1.70
4796692--4796749	22	2.6	22	86	0	62	48	5	6	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796605--4796728	44	2.8	44	81	6	110	43	9	10	36	1.72
4796702--4796764	22	2.9	22	87	0	81	47	3	6	42	1.44
4796763--4796902	22	6.4	22	80	3	147	47	9	5	38	1.58
4796678--4796860	96	1.9	95	81	10	221	46	7	6	40	1.56
4796763--4796902	44	3.2	44	84	4	167	47	9	5	38	1.58
4796776--4796948	22	7.9	22	77	9	115	45	9	7	36	1.66
4796776--4796955	66	2.7	66	81	5	186	46	9	7	36	1.65
4797223--4797275	23	2.3	23	90	3	81	45	5	9	39	1.60
4797455--4797606	22	7.0	22	81	4	146	47	7	7	37	1.60
4797438--4797606	65	2.6	66	81	5	182	46	8	7	38	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100