genome.fa.s168.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  19  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3690343--3690389	16	3.0	15	76	17	51	48	0	0	51	1.00
3698608--3698653	18	2.5	18	85	3	65	28	13	8	50	1.70
3702242--3702587	114	3.0	114	95	0	611	21	14	34	29	1.93
3703643--3703737	48	2.0	48	95	0	172	47	10	20	22	1.80
3707150--3707216	20	3.4	20	74	8	66	70	10	2	16	1.28
3721180--3721224	15	3.0	15	80	0	54	24	62	4	8	1.43
3739393--3739431	20	1.9	20	84	5	51	51	5	2	41	1.38
3750492--3750553	17	3.9	16	80	16	74	75	0	14	9	1.03
3750455--3750553	8	12.6	8	78	12	98	75	0	12	12	1.04
3751546--3751794	42	6.0	42	86	4	283	23	15	22	39	1.91
3751545--3751795	84	3.0	84	86	4	314	23	15	21	39	1.91
3752002--3752052	6	8.2	6	79	16	59	17	1	0	80	0.81
3751976--3752043	26	2.6	25	82	15	77	13	7	0	79	0.93
3752031--3752115	12	7.1	12	71	18	52	24	2	1	71	1.04
3753123--3753264	5	28.2	5	71	14	71	17	4	3	73	1.15
3753219--3753275	30	1.9	30	89	7	89	17	7	1	73	1.14
3753293--3753508	58	3.7	58	83	12	257	44	6	12	36	1.69
3755318--3755369	15	3.4	16	85	12	58	23	0	7	69	1.14
3755735--3755770	19	1.9	18	94	5	63	88	0	11	0	0.50
3756552--3756591	14	2.9	13	82	10	53	72	0	5	22	1.04
3756894--3756926	17	1.9	17	93	0	57	12	0	6	81	0.85
3757277--3757301	11	2.3	11	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3757952--3757998	15	3.2	15	78	6	60	78	4	0	17	0.90
3757956--3757998	22	2.0	22	90	9	70	79	2	0	18	0.85
3757958--3758000	7	5.8	8	83	10	56	76	2	0	20	0.89
3762084--3762132	22	2.2	22	92	0	80	26	18	12	42	1.85
3762351--3762383	9	3.7	9	88	11	50	78	0	15	6	0.93
3762331--3762406	34	2.2	34	81	9	84	71	0	19	9	1.13
3762361--3762406	24	1.9	24	86	8	67	73	0	15	10	1.08
3762351--3762397	18	2.4	18	86	10	58	76	0	14	8	1.01
3762370--3762422	23	2.2	24	80	3	63	73	0	16	9	1.08
3769293--3769385	25	4.0	23	80	12	109	39	9	10	39	1.73
3769326--3769687	21	16.7	21	73	17	210	40	9	12	37	1.75
3769301--3769666	46	8.3	44	72	16	228	40	9	11	37	1.75
3769428--3769516	25	3.8	25	76	13	89	41	7	11	39	1.70
3769664--3769745	28	2.9	28	90	0	128	31	6	17	45	1.72
3770294--3770573	43	6.6	43	87	2	370	26	11	16	45	1.82
3770294--3770590	85	3.5	85	83	4	377	25	12	16	45	1.81
3770294--3770589	128	2.3	127	86	3	389	26	12	16	45	1.82
3771217--3771261	20	2.3	20	84	3	56	20	6	13	60	1.55
3771825--3771867	8	5.5	8	86	5	61	76	2	0	20	0.89
3771825--3771867	15	2.8	16	85	3	61	76	2	0	20	0.89
3788827--3788928	53	1.9	54	82	9	129	34	5	8	50	1.57
3790759--3790795	18	2.0	19	85	15	51	70	0	2	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3791767--3791798	5	6.4	5	100	0	64	59	0	0	40	0.97
3795456--3795498	12	3.6	12	83	0	59	58	0	0	41	0.98
3797655--3797712	25	2.4	23	80	11	62	70	0	5	24	1.07
3798409--3798440	16	2.0	16	93	0	55	15	15	18	50	1.79
3804543--3805164	187	3.4	184	69	14	464	36	11	14	37	1.83
3804538--3805422	357	2.5	357	86	2	1148	36	12	13	37	1.83
3811587--3811632	24	1.9	24	100	0	92	30	4	17	47	1.67
3815646--3815700	8	6.9	8	82	14	51	14	0	43	41	1.45
3815701--3815754	15	3.7	14	78	7	54	18	0	25	55	1.43
3815828--3815907	30	2.6	30	78	9	90	18	5	31	45	1.71
3815911--3815957	21	2.1	23	88	7	71	27	0	19	53	1.45
3815912--3815987	36	2.1	37	82	2	91	25	1	23	50	1.57
3816105--3816152	8	5.7	9	76	18	50	14	0	35	50	1.44
3816104--3816152	25	2.0	25	92	8	82	16	0	34	48	1.46
3816447--3816494	3	15.3	3	82	8	53	27	0	4	68	1.07
3817761--3817809	24	2.1	23	84	3	62	67	2	4	26	1.19
3818069--3818099	14	2.2	14	94	0	53	0	0	9	90	0.46
3819009--3819176	22	7.6	22	80	5	133	28	20	19	30	1.97
3819017--3819159	44	3.2	44	81	2	153	26	20	21	30	1.98
3819452--3819518	31	2.2	31	91	5	109	43	10	13	32	1.78
3820186--3820250	17	3.6	18	78	14	71	3	23	1	72	1.07
3820209--3820250	18	2.3	19	91	4	68	2	26	0	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3821629--3821672	18	2.4	18	80	0	52	4	13	2	79	0.98
3823053--3823146	46	2.0	46	87	4	136	27	14	6	51	1.67
3826544--3826591	22	2.2	22	96	0	87	33	6	12	47	1.66
3826788--3826828	21	2.0	21	85	0	55	14	2	34	48	1.57
3826859--3826897	18	2.1	19	85	4	53	20	2	25	51	1.60
3826877--3827033	22	7.0	23	71	11	94	21	1	31	45	1.63
3826898--3827084	44	4.2	45	74	6	119	22	2	29	45	1.64
3826967--3827011	16	2.8	16	89	0	72	17	0	35	46	1.49
3826950--3827011	32	1.9	32	83	0	79	17	0	35	46	1.49
3826999--3827066	14	4.7	14	74	13	57	19	2	26	51	1.61
3827180--3827274	23	4.2	22	73	11	77	26	1	17	54	1.50
3827180--3827274	46	2.1	44	84	7	120	26	1	17	54	1.50
3827221--3827279	29	2.0	30	83	3	75	30	0	20	49	1.49
3827256--3827312	25	2.4	25	85	11	75	24	1	28	45	1.63
3827443--3827495	3	17.7	3	82	7	56	26	3	0	69	1.05
3827449--3827504	27	2.0	29	86	6	80	28	3	0	67	1.07
3827613--3827670	31	1.9	29	83	13	73	34	0	6	58	1.25
3836467--3837294	361	2.3	361	87	3	1165	34	14	13	37	1.85
3839568--3839610	21	2.0	21	81	0	50	41	30	18	9	1.82
3842806--3842854	24	2.1	23	84	3	62	67	2	0	30	1.02
3843557--3843848	151	1.9	150	85	3	399	35	14	14	35	1.87
3844648--3844680	14	2.4	14	90	5	50	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3844639--3844690	19	2.8	17	83	16	68	69	1	0	28	0.99
3846335--3846420	44	1.9	45	86	6	122	43	9	17	30	1.80
3852147--3852189	3	14.3	3	80	0	50	55	0	0	44	0.99
3852153--3852189	12	3.1	12	92	0	56	56	0	0	43	0.99
3853206--3853263	20	2.9	19	75	10	53	22	1	1	74	1.01
3853322--3853346	3	8.3	3	100	0	50	64	0	0	36	0.94
3853667--3853704	17	2.2	17	95	0	67	52	34	0	13	1.40
3857424--3857468	22	2.0	21	84	16	56	42	4	6	46	1.50
3859336--3859822	259	1.9	255	89	1	749	33	10	16	39	1.83
3862837--3862900	23	2.7	23	86	11	85	73	0	6	20	1.04
3869886--3870251	203	1.8	200	82	5	468	35	11	8	44	1.71
3871332--3871377	23	2.0	22	91	4	74	82	0	4	13	0.81
3871332--3871377	22	2.0	23	88	12	69	82	0	4	13	0.81
3871574--3871679	50	2.2	50	90	6	166	35	22	15	26	1.93
3871640--3871723	41	2.0	41	95	0	150	33	23	14	28	1.94
3880880--3880925	22	2.1	22	83	0	56	15	15	4	65	1.43
3882537--3882594	17	3.6	17	75	13	59	17	1	5	75	1.06
3882547--3882611	30	2.1	31	82	2	78	18	1	7	72	1.17
3884724--3884821	50	2.0	50	93	0	169	43	4	18	33	1.69
3884804--3884854	24	2.1	24	88	0	75	56	1	13	27	1.48
3885067--3885125	18	3.1	20	72	18	63	47	0	0	52	1.00
3887036--3887438	214	1.9	213	92	0	680	40	9	6	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3887277--3887543	129	2.1	130	89	2	412	38	9	5	46	1.60
3890632--3890682	16	3.4	15	77	22	54	17	0	33	49	1.47
3890621--3890682	30	2.1	29	82	8	72	16	0	32	51	1.44
3890694--3890812	16	7.5	15	77	11	112	20	1	28	49	1.58
3890697--3890815	48	2.5	47	81	11	134	21	1	26	49	1.59
3890676--3890812	32	4.2	31	77	10	132	20	1	29	48	1.58
3891220--3891261	22	1.9	22	90	0	66	73	2	2	21	1.06
3892214--3892259	16	2.8	16	83	9	58	6	8	2	82	0.91
3892220--3892268	24	2.0	26	88	8	75	8	6	2	83	0.87
3892274--3892298	3	8.3	3	100	0	50	36	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100