Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  100  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34416909--34417200
50
5.7
50
87
6
363
26
22
30
20
1.98
34416909--34417200
150
1.9
154
86
5
423
26
22
30
20
1.98
34418897--34418967
36
2.0
35
88
2
106
35
9
25
29
1.88
34425148--34425184
16
2.3
16
90
0
56
70
0
0
29
0.88
34425537--34425587
22
2.4
22
96
3
95
60
0
7
31
1.25
34425821--34425933
30
3.8
28
72
11
82
35
9
15
38
1.81
34431423--34431514
38
2.4
38
83
7
116
31
42
9
16
1.80
34433270--34433351
37
2.3
37
81
10
98
36
1
3
58
1.24
34433399--34433426
14
2.0
14
100
0
56
50
14
7
28
1.69
34439370--34439409
19
2.2
17
91
8
62
45
5
15
35
1.68
34443186--34443402
61
3.5
61
78
11
192
28
19
25
26
1.99
34444047--34444076
6
5.0
6
95
0
51
3
16
16
63
1.44
34449032--34449154
43
2.9
43
84
4
133
27
15
23
33
1.95
34449021--34449165
43
3.4
42
80
3
130
30
14
23
31
1.94
34452604--34452639
16
2.2
16
90
0
54
0
25
0
75
0.81
34453365--34453420
26
2.2
26
83
0
67
28
1
5
64
1.26
34453507--34453773
63
4.5
62
76
13
218
29
19
24
27
1.98
34453615--34453718
50
2.1
50
90
0
163
25
21
25
26
1.99
34453558--34453773
113
1.9
113
87
0
315
26
19
25
27
1.99
34453687--34453828
63
2.3
63
82
4
171
30
19
21
27
1.98
34453508--34453828
176
1.8
175
80
3
385
28
19
24
26
1.99
34458642--34458703
32
1.9
32
90
3
97
61
1
4
32
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34458645--34458703
16
3.6
17
71
13
52
61
1
5
32
1.28
34461189--34461370
38
4.8
38
91
0
276
30
31
24
13
1.93
34463402--34463431
2
15.0
2
100
0
60
50
0
0
50
1.00
34466494--34466538
22
2.1
21
83
4
54
53
26
13
6
1.64
34475064--34475136
24
3.0
24
89
0
110
35
21
28
13
1.92
34479024--34479165
70
2.0
70
100
0
284
35
16
6
41
1.74
34495376--34495434
26
2.3
26
81
0
73
22
23
18
35
1.96
34495879--34495938
27
2.2
27
96
0
111
30
13
11
45
1.79
34496538--34496569
14
2.1
16
88
11
50
59
0
0
40
0.97
34501748--34501840
47
2.0
47
93
0
159
40
13
16
29
1.87
34506370--34506413
23
1.9
23
85
0
61
29
2
4
63
1.26
34514370--34514411
22
2.1
19
86
13
57
45
2
0
52
1.13
34515975--34516033
25
2.3
27
82
8
70
47
1
3
47
1.29
34516040--34516121
16
4.8
16
73
16
58
71
2
20
4
1.16
34516990--34517129
40
3.5
40
77
6
151
27
18
25
28
1.98
34526670--34526704
15
2.2
16
95
5
63
51
0
0
48
1.00
34527223--34527272
25
2.0
26
88
4
75
60
16
0
24
1.36
34529210--34529696
241
2.0
241
97
0
911
24
14
22
38
1.91
34531145--34531182
18
2.1
18
90
0
58
39
0
0
60
0.97
34532352--34532391
14
2.9
14
84
0
53
32
7
17
42
1.77
34532375--34532414
20
2.0
20
90
0
62
27
10
12
50
1.72
34532360--34532426
34
1.9
35
90
3
109
31
8
13
46
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34532354--34532430
14
5.0
15
71
20
52
32
9
15
42
1.78
34532871--34532928
26
2.2
26
93
0
98
41
10
12
36
1.76
34534953--34534994
12
4.0
11
79
20
54
52
7
40
0
1.29
34534953--34534989
19
1.9
19
100
0
74
51
5
43
0
1.24
34543047--34543108
22
2.8
22
92
0
97
35
14
25
24
1.93
34548957--34548990
17
1.9
17
88
5
50
23
50
17
8
1.74
34548966--34548999
17
2.0
17
88
11
52
23
47
17
11
1.81
34549813--34549858
18
2.6
16
81
18
56
30
2
0
67
1.03
34549874--34549922
25
2.0
25
84
8
64
36
6
6
51
1.52
34549919--34549952
11
2.8
12
91
8
52
32
0
0
67
0.91
34549961--34549999
18
2.2
17
86
4
51
35
7
0
56
1.28
34560211--34560249
20
2.0
20
90
5
62
64
2
5
28
1.28
34562376--34562769
44
8.8
42
69
16
195
29
20
17
32
1.95
34562227--34562778
142
4.0
141
87
6
772
28
20
17
32
1.96
34562511--34562769
129
2.0
129
90
0
401
30
19
17
32
1.95
34577781--34577821
22
2.0
19
86
13
55
48
12
19
19
1.80
34579659--34579776
50
2.4
50
84
5
157
23
24
24
27
2.00
34579855--34580161
100
3.1
100
86
0
427
28
18
24
28
1.98
34579846--34580126
50
5.6
50
65
5
145
28
18
25
27
1.98
34581730--34581780
3
17.3
3
80
11
61
29
1
0
68
1.00
34581797--34581844
25
2.0
25
87
4
71
35
6
6
52
1.52
34581886--34581924
18
2.2
17
86
4
51
35
7
0
56
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34582114--34582142
13
2.1
14
93
6
51
41
6
0
51
1.28
34583776--34583802
7
3.9
7
100
0
54
44
11
0
44
1.39
34584812--34584889
30
2.6
30
76
11
72
26
7
11
53
1.63
34585729--34585761
2
16.5
2
100
0
66
48
0
0
51
1.00
34588240--34588272
16
2.1
16
100
0
66
39
12
12
36
1.80
34593605--34593701
27
3.6
26
71
9
70
58
9
7
24
1.54
34599317--34599368
16
3.2
16
83
0
68
32
0
30
36
1.58
34599733--34599880
57
2.5
60
85
9
205
22
26
21
29
1.99
34602333--34602393
23
2.7
23
92
0
95
14
18
21
45
1.84
34604079--34604107
2
14.5
2
100
0
58
51
0
0
48
1.00
34604125--34604160
14
2.6
14
91
4
56
47
27
8
16
1.75
34604740--34604903
2
84.0
2
84
15
220
45
1
1
51
1.19
34604846--34605240
3
132.7
3
87
4
523
34
1
3
61
1.22
34629721--34629771
2
26.0
2
84
11
70
47
0
3
49
1.20
34631317--34631370
18
3.0
18
78
7
56
53
0
0
46
1.00
34631376--34631438
19
3.3
19
77
2
63
63
4
3
28
1.30
34631642--34631744
29
3.5
28
73
15
82
29
6
2
61
1.36
34631701--34631778
22
3.7
21
79
8
79
29
3
1
65
1.18
34631678--34631779
20
4.9
21
71
14
68
29
5
0
63
1.24
34631701--34631785
21
4.2
19
71
18
55
28
3
2
65
1.21
34631662--34631779
61
1.9
61
81
6
139
30
5
1
62
1.26
34631677--34631815
71
1.9
73
82
5
176
30
4
1
63
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34631762--34631796
17
1.9
18
88
11
54
25
0
2
71
1.00
34633798--34635242
730
2.0
729
99
0
2872
40
9
10
39
1.72
34636545--34636577
17
1.9
17
93
0
57
69
0
3
27
1.03
34639401--34639431
14
2.2
14
94
0
53
61
16
0
22
1.34
34640537--34640576
16
2.5
16
91
0
62
47
2
7
42
1.45
34640579--34640698
59
2.1
59
90
1
197
41
5
9
44
1.58
34640762--34640809
23
2.0
24
84
11
64
58
4
0
37
1.18
34640764--34640809
24
1.9
24
86
8
67
60
4
0
34
1.16
34657387--34657424
14
2.4
17
87
12
55
52
0
0
47
1.00
34657404--34657447
12
3.7
11
80
14
52
45
2
0
52
1.13
34657399--34657461
24
2.7
23
78
9
65
50
1
0
47
1.10
34657416--34657464
20
2.5
20
76
6
55
53
2
0
44
1.12
34664403--34664696
157
1.9
157
80
4
342
30
14
23
31
1.94
34666415--34666468
26
2.1
26
89
0
81
37
1
0
61
1.07
34666447--34666480
18
1.9
18
88
5
52
44
0
0
55
0.99
34685074--34685106
13
2.3
15
85
15
52
75
6
0
18
1.00
34685578--34685636
15
3.7
15
75
8
55
8
10
1
79
1.00
34690718--34690758
17
2.3
19
87
8
59
70
0
2
26
0.99
34691091--34691148
20
2.8
21
74
10
57
25
22
15
36
1.94
34692280--34692374
46
2.1
46
97
0
181
21
6
24
48
1.73
34695428--34695459
2
16.0
2
100
0
64
50
0
0
50
1.00
34698839--34698863
13
1.9
13
100
0
50
40
24
4
32
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34704524--34704564
21
2.0
21
85
4
57
63
7
9
19
1.48
34706431--34706870
224
2.0
225
98
0
846
28
13
20
37
1.91
34710175--34710228
26
2.2
24
80
12
56
42
3
9
44
1.54
34713733--34713768
2
18.0
2
94
0
63
47
0
2
50
1.15
34715349--34715468
41
2.9
41
83
4
145
30
19
21
29
1.97
34721636--34721660
2
12.5
2
100
0
50
52
48
0
0
1.00
34725011--34725041
16
2.0
15
93
6
53
45
0
0
54
0.99
34726927--34727077
76
2.0
76
92
1
250
45
20
9
25
1.81
34736457--34736509
25
2.1
26
86
10
74
33
0
1
64
1.05
34736461--34736516
25
2.2
26
81
9
62
42
0
1
55
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226