Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  111  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38086123--38086201
28
2.9
27
88
5
122
12
11
1
74
1.13
38088904--38088938
18
1.9
18
94
0
61
20
8
8
62
1.49
38093897--38094226
165
2.0
165
95
0
588
23
31
23
21
1.98
38095173--38095243
28
2.5
28
84
11
99
12
12
2
71
1.24
38095282--38095322
11
3.6
11
90
3
55
14
4
4
75
1.14
38095281--38095322
12
3.6
12
93
3
68
14
4
4
76
1.12
38096872--38097002
41
3.2
41
96
0
235
34
16
17
32
1.92
38097181--38097231
20
2.6
20
90
3
77
27
19
27
25
1.99
38100660--38100704
20
2.3
19
84
7
54
24
33
11
31
1.90
38114036--38114077
21
2.0
20
86
13
59
21
50
9
19
1.75
38114186--38114239
25
2.1
26
86
10
76
31
3
1
62
1.23
38115130--38115191
3
20.7
3
96
0
115
67
0
32
0
0.91
38119520--38119561
20
2.2
19
87
12
59
16
21
4
57
1.58
38128796--38128860
22
2.9
22
90
2
94
33
33
4
27
1.78
38129159--38129189
12
2.7
12
95
5
55
77
6
6
9
1.12
38130168--38130199
15
2.1
16
94
5
57
71
0
21
6
1.07
38132990--38133097
41
2.6
41
95
0
189
34
17
18
29
1.94
38137532--38137580
18
2.6
19
78
18
57
22
2
2
73
1.04
38137523--38137580
22
2.6
22
78
10
73
22
1
3
72
1.09
38141313--38141361
18
2.6
19
78
18
57
22
2
2
73
1.04
38141312--38141361
22
2.3
22
83
10
66
22
2
2
74
1.03
38147387--38147459
25
2.9
25
87
0
110
32
6
17
42
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38147390--38147499
25
4.4
25
80
6
93
30
10
18
40
1.84
38147825--38149047
610
2.0
610
98
0
2347
29
18
16
35
1.93
38152351--38152383
12
2.5
13
90
9
50
69
0
18
12
1.18
38152925--38152968
23
1.9
23
85
0
61
52
6
2
38
1.41
38155836--38155897
2
31.5
2
96
3
117
51
0
0
48
1.00
38165490--38165539
26
1.9
26
95
0
91
18
22
32
28
1.97
38165516--38165838
85
3.8
85
88
1
452
23
16
25
34
1.96
38165519--38165838
43
7.5
44
76
10
283
23
16
25
34
1.96
38176512--38176571
20
3.0
20
90
0
93
36
20
28
15
1.92
38179217--38179287
27
2.6
27
88
0
106
29
19
21
29
1.98
38180551--38180577
12
2.2
12
100
0
54
7
59
0
33
1.25
38186123--38186249
41
3.1
41
85
2
175
34
26
16
22
1.95
38190673--38190701
14
2.1
14
100
0
58
62
6
0
31
1.22
38190380--38193305
326
9.0
325
85
4
3703
37
17
9
35
1.82
38190381--38193299
967
3.0
962
85
4
3836
37
17
9
35
1.83
38193281--38193310
11
2.7
11
94
0
51
26
26
0
46
1.53
38194312--38194362
23
2.2
23
92
0
84
43
23
7
25
1.81
38197922--38197980
20
3.0
20
72
5
57
42
16
22
18
1.89
38208837--38208900
16
4.4
16
74
20
68
75
3
10
10
1.17
38208827--38208899
27
2.7
27
95
0
128
75
4
9
10
1.17
38216401--38216551
76
2.0
76
88
0
221
29
24
5
40
1.79
38221277--38221330
20
2.7
19
86
8
81
24
22
16
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38228047--38228126
27
3.0
27
78
14
85
48
11
12
27
1.75
38231082--38231127
24
2.0
22
84
12
58
32
4
39
23
1.75
38231380--38231414
13
2.7
13
95
0
61
5
22
0
71
1.07
38232465--38232516
27
1.9
27
84
7
70
48
21
15
15
1.81
38233720--38233764
18
2.6
16
89
10
63
4
17
2
75
1.07
38233720--38233754
6
5.8
6
86
0
52
2
17
2
77
1.02
38240705--38240769
20
3.3
19
73
16
51
38
16
21
23
1.93
38246366--38246407
22
2.1
19
86
13
57
45
0
0
54
0.99
38246366--38246404
16
2.5
15
83
8
51
46
0
0
53
1.00
38247599--38247641
20
2.2
20
86
0
59
30
25
11
32
1.91
38251182--38251251
27
2.6
27
82
8
88
45
21
18
14
1.84
38252863--38252904
10
4.3
10
78
6
50
28
11
23
35
1.91
38256384--38256491
41
2.6
41
94
0
180
34
16
18
30
1.93
38258215--38258246
15
2.1
16
94
5
57
6
21
0
71
1.07
38262366--38262499
66
2.0
66
97
0
250
36
12
20
29
1.90
38275317--38275356
18
2.2
19
90
4
64
15
27
0
57
1.38
38276423--38276480
14
4.1
14
84
8
82
22
10
3
63
1.40
38295607--38295643
18
2.1
18
89
0
56
8
18
0
72
1.08
38296542--38296574
11
2.8
12
86
13
50
27
0
6
66
1.15
38297600--38297651
27
1.9
27
88
0
77
30
3
11
53
1.54
38297944--38297987
22
2.0
21
82
4
52
43
6
22
27
1.78
38298833--38298867
12
3.0
12
91
4
54
68
14
5
11
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38300890--38300927
19
2.0
19
100
0
76
26
15
15
42
1.87
38304172--38304236
22
2.9
22
88
2
85
35
33
3
27
1.73
38304540--38304601
11
5.8
11
76
16
60
75
1
8
14
1.10
38304554--38304601
21
2.3
21
82
3
62
81
2
6
10
0.95
38306823--38306867
19
2.3
19
84
3
54
75
2
15
6
1.11
38306843--38306908
15
4.5
15
74
16
50
71
3
19
6
1.21
38311062--38311098
6
5.8
6
87
12
56
81
0
0
18
0.70
38312332--38312369
20
1.9
20
84
10
51
28
28
18
23
1.98
38313899--38313927
14
2.1
14
93
6
51
75
6
3
13
1.13
38313906--38313983
41
1.9
41
86
5
113
75
2
15
6
1.11
38313929--38313986
14
4.2
14
74
17
50
75
1
17
5
1.06
38315022--38315068
15
3.1
15
84
9
60
70
0
17
12
1.17
38315098--38315137
12
3.3
12
82
0
53
60
2
22
15
1.47
38316586--38316631
20
2.3
20
85
7
58
28
28
17
26
1.98
38330687--38330733
20
2.3
20
85
7
60
25
17
29
27
1.97
38334625--38334666
22
2.0
21
90
4
66
30
33
4
30
1.78
38334970--38335018
18
2.6
19
78
18
57
73
2
2
22
1.04
38335904--38335968
22
2.9
22
90
2
94
33
33
4
27
1.78
38337467--38338418
476
2.0
476
98
0
1823
25
18
17
38
1.92
38345852--38346034
99
1.9
98
82
3
233
25
32
20
21
1.97
38347345--38347370
13
2.0
13
100
0
52
38
23
0
38
1.55
38347889--38347955
20
3.3
20
82
0
80
37
20
32
8
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38350100--38350251
81
1.9
81
91
2
252
38
19
16
25
1.92
38350095--38350251
27
5.8
27
87
3
226
38
19
16
26
1.92
38350107--38350277
81
2.1
81
85
4
229
38
19
17
24
1.93
38350100--38350292
54
3.6
52
82
10
183
39
19
16
24
1.92
38350276--38350481
27
7.8
27
75
5
152
36
21
20
21
1.95
38350282--38350480
54
3.8
54
80
4
199
37
20
21
21
1.95
38350509--38350593
24
3.6
23
79
4
80
22
9
24
43
1.82
38350554--38350597
11
3.8
11
77
11
52
13
6
29
50
1.68
38350526--38350608
24
3.5
24
86
0
112
21
7
24
46
1.76
38350566--38350608
13
3.5
13
78
12
54
18
6
25
48
1.73
38350697--38350750
26
2.1
26
85
0
72
18
16
24
40
1.90
38357559--38357612
20
2.7
20
91
0
81
40
24
25
9
1.85
38359575--38359651
10
7.9
9
80
13
82
23
28
12
35
1.92
38359575--38359645
20
3.5
20
81
14
101
23
28
12
35
1.92
38382155--38382188
17
2.0
18
88
11
54
52
5
5
35
1.50
38386532--38386632
52
1.9
52
93
0
175
32
20
18
27
1.96
38389579--38389638
29
2.1
29
87
0
84
21
40
21
16
1.92
38391944--38391984
16
2.6
16
96
3
75
63
0
7
29
1.21
38395711--38395746
10
3.6
10
88
0
54
25
22
16
36
1.94
38397608--38397693
29
3.1
28
84
12
90
33
8
12
45
1.72
38397621--38397693
29
2.5
29
95
0
128
31
9
13
45
1.76
38398879--38398914
9
3.8
9
92
7
54
83
8
0
8
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38398877--38398925
11
4.6
11
85
10
66
81
6
2
10
0.94
38398879--38398925
20
2.3
20
92
0
76
80
6
2
10
0.96
38417782--38417848
12
5.2
12
78
18
64
16
8
2
71
1.24
38417787--38417822
16
2.3
15
86
9
54
8
8
2
80
0.99
38417802--38417844
11
3.7
11
81
9
50
9
6
4
79
1.06
38417802--38417845
23
1.9
23
90
0
70
9
6
4
79
1.04
38421588--38421660
29
2.5
29
93
0
119
31
8
13
46
1.73
38426738--38426771
11
3.2
11
83
8
52
29
11
32
26
1.92
38428962--38429001
11
3.6
11
89
0
62
85
5
2
7
0.83
38439268--38439301
15
2.4
14
90
5
50
14
5
5
73
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226