Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  153  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49856336--49856378
12
3.5
13
82
17
56
2
16
0
81
0.79
49856340--49856390
17
2.9
17
85
8
59
1
13
3
80
0.94
49859618--49860135
107
4.9
107
88
1
702
35
15
16
32
1.90
49860489--49860541
26
2.0
26
85
0
70
45
9
13
32
1.75
49863035--49863083
20
2.5
20
78
15
57
38
4
0
57
1.18
49863407--49863488
28
2.9
28
70
21
73
31
9
1
57
1.39
49870537--49870630
44
2.1
44
86
0
125
30
19
23
26
1.98
49870409--49870681
142
1.9
142
93
1
467
32
17
20
29
1.96
49870757--49871530
50
15.6
50
69
7
378
33
23
20
23
1.97
49870807--49870997
92
2.1
92
85
4
253
29
25
20
24
1.99
49870942--49871528
100
5.9
99
79
6
596
34
22
20
22
1.97
49870744--49871530
201
4.0
202
79
8
798
33
23
20
23
1.97
49873037--49873084
19
2.5
19
83
9
62
39
4
0
56
1.19
49874810--49874840
16
1.9
16
93
0
53
45
9
12
32
1.75
49876880--49876922
20
2.0
20
86
8
59
34
4
4
55
1.41
49881456--49881486
9
3.4
9
90
0
53
25
12
22
38
1.90
49881540--49881576
9
4.1
9
92
0
65
45
13
10
29
1.77
49881790--49881849
30
2.0
31
83
3
77
18
40
1
40
1.60
49882604--49882629
5
5.2
5
100
0
52
19
19
19
42
1.90
49885410--49885443
9
3.9
9
84
7
52
44
0
2
52
1.16
49889154--49889283
56
2.3
56
92
2
199
39
10
3
47
1.53
49889175--49889286
56
2.0
56
100
0
224
39
12
3
44
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49890817--49890849
13
2.5
13
86
13
50
33
0
0
66
0.92
49891385--49891435
26
2.0
26
100
0
102
25
19
11
43
1.85
49910241--49910307
25
2.7
25
90
0
107
20
22
1
55
1.52
49914243--49914268
13
2.0
13
100
0
52
15
0
0
84
0.62
49914935--49915019
3
28.7
3
90
2
91
24
1
8
65
1.27
49923094--49923183
3
29.3
3
77
10
85
32
3
2
62
1.24
49923094--49923183
24
3.5
26
81
13
98
32
3
2
62
1.24
49923370--49923403
10
3.5
10
88
4
52
26
0
0
73
0.83
49935747--49936809
129
8.2
129
94
0
1874
31
18
21
29
1.96
49938253--49938330
3
25.3
3
73
12
61
32
3
2
61
1.27
49938264--49938330
24
2.6
25
86
9
91
32
4
1
61
1.25
49940979--49941020
22
1.9
22
85
9
59
47
0
9
42
1.36
49942300--49942344
19
2.4
18
82
17
56
48
2
0
48
1.13
49943301--49943354
28
1.9
28
85
7
74
3
18
5
72
1.20
49944109--49944137
7
4.1
7
100
0
58
31
0
13
55
1.39
49961644--49961672
2
14.5
2
100
0
58
48
0
0
51
1.00
49968593--49968676
42
2.0
42
95
0
150
33
21
4
40
1.74
49977252--49977469
113
2.0
109
87
5
312
46
12
9
31
1.74
49982719--49982784
3
22.0
3
78
17
66
63
1
4
30
1.23
49982719--49982777
15
3.7
16
84
11
77
62
1
5
30
1.26
49983513--49983549
19
1.9
19
94
0
65
70
5
18
5
1.27
49984297--49985032
50
14.7
50
78
5
729
26
19
21
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49984297--49985032
100
7.4
100
90
1
1066
26
19
21
32
1.97
49986167--49986213
21
2.2
21
84
0
58
25
36
10
27
1.89
49987164--49987272
45
2.4
45
76
4
121
41
16
13
28
1.87
49988057--49988088
3
10.7
3
100
0
64
68
0
0
31
0.90
49988855--49988895
13
3.0
13
86
13
64
26
7
14
51
1.69
49989893--49989923
15
2.1
15
93
0
53
32
3
32
32
1.74
49991506--49992258
373
2.0
373
97
0
1416
40
10
13
35
1.79
49993482--49993513
16
2.0
16
93
0
55
40
25
6
28
1.79
49996158--49996224
34
1.9
35
87
3
100
46
13
8
31
1.74
49996193--49996232
14
2.9
14
84
0
53
42
17
7
32
1.77
49999683--49999722
18
2.2
18
86
13
55
10
17
7
65
1.46
50000538--50000669
29
4.5
30
80
8
137
33
24
2
40
1.68
50000537--50000668
59
2.2
57
82
7
149
33
24
2
40
1.68
50000870--50000906
19
2.0
19
89
5
58
78
13
8
0
0.96
50001859--50002037
93
1.9
93
89
4
281
41
3
16
38
1.67
50002076--50002492
126
3.3
126
89
1
631
33
19
20
26
1.96
50008135--50008161
2
13.5
2
100
0
54
51
0
0
48
1.00
50010036--50010090
21
2.6
21
85
2
65
9
10
43
36
1.72
50010056--50010096
21
2.0
21
85
9
57
14
14
36
34
1.87
50011015--50011040
7
3.7
7
100
0
52
57
15
0
26
1.38
50012249--50012291
10
4.0
10
82
14
50
44
0
32
23
1.54
50015878--50015918
20
2.0
21
85
9
57
51
0
7
41
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50017029--50017173
49
3.0
49
89
6
210
28
11
17
42
1.84
50017346--50017458
47
2.4
47
92
2
183
52
6
11
30
1.62
50017366--50017460
47
2.0
47
100
0
190
49
6
12
31
1.66
50027727--50027777
23
2.3
23
79
3
59
41
7
17
33
1.79
50030386--50030412
14
1.9
14
100
0
54
66
0
0
33
0.92
50031951--50031983
12
2.6
13
85
9
50
36
18
3
42
1.66
50036202--50036231
14
2.1
14
100
0
60
33
20
20
26
1.97
50036782--50036806
6
4.2
6
100
0
50
52
48
0
0
1.00
50041307--50041348
11
3.9
11
79
14
52
26
0
2
71
0.98
50041301--50041335
13
2.8
12
91
8
52
28
0
0
71
0.86
50041389--50041446
16
3.6
16
72
9
55
32
1
5
60
1.29
50043239--50043446
45
4.6
44
67
16
147
30
15
22
31
1.95
50043240--50043507
137
2.0
137
91
0
437
32
14
22
30
1.94
50043196--50043942
44
16.6
45
71
13
189
31
17
21
29
1.96
50043510--50043864
44
7.7
48
82
8
230
33
18
20
27
1.96
50043372--50043949
226
2.6
220
80
7
556
32
18
20
28
1.96
50043598--50043996
44
8.9
44
81
6
410
32
20
20
26
1.97
50043601--50043942
182
1.9
177
85
5
463
32
20
20
26
1.97
50043510--50043986
226
2.1
227
86
3
658
32
19
20
27
1.97
50044289--50044317
13
2.1
14
93
6
51
75
13
0
10
1.04
50052775--50052800
13
2.0
13
100
0
52
53
0
0
46
1.00
50052895--50052966
10
7.3
10
76
1
56
36
6
0
56
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50060547--50060590
22
2.1
22
83
8
56
36
0
6
56
1.26
50078299--50080282
598
3.3
598
93
0
3290
34
15
17
32
1.92
50081394--50081459
28
2.3
29
94
5
116
51
7
12
28
1.66
50084206--50084261
29
1.9
29
82
7
69
33
5
7
53
1.51
50086598--50086635
20
1.9
20
84
10
51
36
0
10
52
1.36
50088620--50088652
12
2.6
13
85
9
50
39
15
3
42
1.62
50088878--50088902
4
6.2
4
100
0
50
24
24
0
52
1.48
50092943--50093041
1
99.0
1
71
0
72
85
10
3
1
0.74
50092944--50093032
8
10.9
8
79
15
94
85
11
2
1
0.74
50092944--50093041
33
3.0
33
81
11
112
85
10
3
1
0.75
50092943--50093041
26
4.1
22
83
12
108
85
10
3
1
0.74
50092943--50093041
42
2.4
42
83
6
130
85
10
3
1
0.74
50093891--50094732
77
10.9
78
92
3
1314
28
15
19
36
1.93
50093891--50094732
155
5.4
156
92
4
1314
28
15
19
36
1.93
50093891--50094732
233
3.6
230
91
4
1300
28
15
19
36
1.93
50094461--50094841
77
5.0
76
81
8
181
26
17
21
33
1.96
50094997--50095141
30
4.9
30
82
6
161
31
26
5
37
1.79
50095006--50095121
58
2.0
59
91
1
189
31
26
3
38
1.73
50095644--50095682
10
3.9
10
89
0
51
74
0
25
0
0.82
50095690--50095732
13
3.2
13
90
6
68
86
0
11
2
0.67
50095690--50095733
14
3.2
13
87
9
61
86
0
11
2
0.66
50095690--50095725
7
5.3
7
96
3
65
86
0
13
0
0.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50095788--50095822
18
1.9
18
88
0
52
37
45
17
0
1.48
50096011--50096062
7
8.0
7
79
12
58
80
0
19
0
0.71
50096007--50096059
11
5.0
11
82
15
58
81
0
18
0
0.70
50096007--50096069
20
3.3
20
89
6
87
77
0
22
0
0.76
50096542--50096680
18
7.8
17
67
15
75
33
15
7
43
1.75
50096540--50096623
36
2.4
35
81
2
96
33
15
8
42
1.77
50096597--50096696
35
2.7
35
84
12
121
34
13
9
44
1.75
50096541--50096678
54
2.5
54
81
12
158
34
15
8
42
1.77
50101564--50101599
15
2.4
15
95
0
63
47
0
5
47
1.25
50103072--50103110
8
4.9
8
90
0
51
25
12
0
61
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226