Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  42  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17834115--17834173
18
3.2
18
77
13
75
47
0
3
49
1.18
17843282--17843313
2
16.0
2
100
0
64
50
0
0
50
1.00
17844128--17844171
18
2.5
17
82
10
52
52
4
2
40
1.34
17846171--17846248
38
2.1
38
85
7
106
32
29
7
30
1.85
17846593--17846654
30
2.1
30
93
0
106
33
14
14
37
1.87
17858335--17858540
102
2.0
102
98
0
394
25
16
18
39
1.92
17869138--17869162
12
2.1
12
100
0
50
92
0
8
0
0.40
17869207--17869548
118
3.0
115
91
7
556
34
11
5
49
1.61
17884072--17884096
12
2.1
12
100
0
50
32
8
0
60
1.26
17884860--17884911
16
3.2
17
79
17
58
50
1
5
42
1.37
17884998--17885072
35
2.1
36
83
11
93
33
1
2
62
1.17
17885143--17885181
16
2.4
16
91
0
60
41
7
23
28
1.82
17889714--17889777
21
3.0
22
72
9
69
37
25
18
18
1.94
17895602--17895631
12
2.5
12
94
0
51
60
3
0
36
1.14
17897768--17898042
137
2.0
137
97
0
514
26
13
14
45
1.82
17905313--17905352
18
2.2
18
90
0
62
27
5
47
20
1.70
17912731--17912798
32
2.1
33
94
2
120
29
10
2
57
1.47
17914586--17914631
19
2.3
20
85
7
67
43
0
4
52
1.21
17915243--17915396
10
16.1
9
71
15
89
60
5
2
31
1.32
17915360--17915404
19
2.4
19
88
7
65
62
0
2
35
1.08
17915669--17915706
19
2.1
18
90
5
58
21
0
2
76
0.91
17930921--17931007
1
87.0
1
72
0
57
85
11
2
1
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17930924--17931007
17
4.8
17
80
10
80
84
11
2
1
0.78
17930920--17931004
35
2.4
34
84
7
109
83
12
2
1
0.80
17930922--17931005
34
2.5
33
84
11
107
84
11
2
1
0.78
17931514--17931565
7
7.3
7
76
20
54
69
1
13
15
1.28
17931514--17931565
15
3.6
14
78
16
54
69
1
13
15
1.28
17932874--17933032
50
3.2
50
69
7
142
32
20
23
23
1.98
17933171--17933445
50
5.5
50
72
6
207
29
21
26
22
1.99
17933133--17933457
99
3.3
99
88
1
454
29
23
24
22
1.99
17937851--17937875
6
4.2
6
100
0
50
84
0
0
16
0.63
17947004--17947163
58
2.8
58
82
1
178
28
19
18
33
1.95
17947055--17947190
58
2.3
58
84
0
182
25
22
15
36
1.93
17967876--17967913
2
19.0
2
100
0
76
50
0
0
50
1.00
17972023--17972067
23
1.9
24
81
4
56
42
0
8
48
1.34
17972729--17972797
31
2.2
32
80
17
81
44
11
7
36
1.68
17974626--17974660
17
2.0
18
94
5
63
34
11
8
45
1.71
17992084--17992114
3
10.3
3
100
0
62
67
0
32
0
0.91
17992112--17992140
2
14.5
2
100
0
58
51
0
48
0
1.00
17998351--17998456
53
2.0
53
83
3
133
24
21
9
44
1.82
17999677--17999716
18
2.2
18
86
8
55
42
0
0
57
0.98
17999674--17999716
13
3.5
13
81
15
56
41
0
0
58
0.98
17999752--17999802
20
2.8
19
85
14
72
72
7
19
0
1.08
17999752--17999806
18
3.0
19
80
20
64
72
7
20
0
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18000521--18000562
2
21.5
2
86
13
61
47
0
2
50
1.14
18000695--18000752
25
2.3
25
84
0
71
17
24
20
37
1.93
18000733--18000798
22
3.0
22
90
0
105
13
19
21
45
1.85
18001868--18001906
17
2.3
17
90
0
60
25
17
25
30
1.97
18002590--18002952
41
8.9
41
92
1
584
18
21
28
31
1.97
18003123--18003234
14
7.4
14
69
20
64
20
1
29
48
1.60
18003186--18003234
14
3.4
14
88
5
71
20
0
32
46
1.51
18003181--18003234
7
7.6
7
77
4
54
22
0
29
48
1.51
18003343--18003375
16
2.1
16
88
11
50
42
0
0
57
0.98
18003752--18003813
29
2.1
29
93
0
106
43
9
8
38
1.67
18007330--18007360
7
4.4
7
95
0
53
80
3
0
16
0.83
18007463--18007819
43
8.3
43
89
1
529
24
19
30
25
1.98
18007429--18007819
128
3.0
129
90
2
581
23
19
30
25
1.98
18009570--18009595
13
2.0
13
100
0
52
38
0
7
53
1.30
18011838--18011892
2
28.5
2
92
7
96
49
0
0
50
1.00
18012607--18012697
39
2.4
37
82
8
96
31
20
2
45
1.64
18012607--18012700
37
2.5
35
79
14
91
30
21
2
45
1.63
18017590--18017632
21
2.0
22
90
4
70
55
4
4
34
1.41
18020853--18020980
67
1.9
67
96
0
238
25
35
18
21
1.96
18038048--18038088
16
2.6
16
88
7
57
46
43
7
2
1.44
18040488--18040553
21
3.2
21
74
8
82
46
4
24
24
1.71
18043495--18043522
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18046259--18046554
99
3.0
99
95
1
529
22
25
17
34
1.96
18060389--18060465
14
5.0
15
71
20
52
44
14
7
33
1.74
18060405--18060444
20
2.0
20
90
0
62
50
12
10
27
1.72
18060393--18060459
34
1.9
35
90
3
109
47
11
7
32
1.68
18060428--18060467
14
2.9
14
80
0
53
45
15
5
35
1.68
18063624--18063665
23
1.9
22
85
9
59
30
19
11
38
1.88
18064639--18064747
41
2.6
41
87
7
157
32
3
0
64
1.11
18064679--18064769
31
2.9
31
80
11
105
36
2
0
61
1.08
18065626--18065657
17
1.9
17
93
6
57
0
9
0
90
0.45
18069660--18069704
23
2.0
23
82
8
56
48
4
0
46
1.22
18074267--18074326
9
6.3
9
77
11
57
30
1
0
68
0.99
18074238--18074355
39
3.0
39
89
7
186
36
3
0
60
1.14
18074267--18074340
9
8.0
9
73
19
55
35
1
0
63
1.03
18074246--18074343
11
9.8
11
69
26
58
38
3
0
58
1.14
18075058--18075087
15
2.0
15
93
0
51
66
0
10
23
1.21
18079752--18079776
7
3.6
7
100
0
50
44
0
28
28
1.55
18081438--18081466
9
3.2
9
100
0
58
75
0
13
10
1.04
18103989--18104084
31
3.1
31
95
3
174
31
9
13
45
1.75
18107665--18107722
28
2.0
29
86
10
82
60
6
1
31
1.33
18107861--18107907
21
2.2
21
96
0
85
57
4
2
36
1.30
18108713--18109009
105
2.8
105
81
6
352
34
18
18
29
1.95
18111911--18111970
29
2.1
29
87
0
84
43
0
40
16
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18112092--18112142
9
5.7
9
92
0
84
35
21
11
31
1.90
18112092--18112142
18
2.8
18
93
0
93
35
21
11
31
1.90
18118798--18118832
16
2.1
17
89
5
54
42
11
0
45
1.40
18121138--18121162
6
4.2
6
100
0
50
48
36
0
16
1.46
18123001--18123025
2
12.5
2
100
0
50
48
0
0
52
1.00
18124096--18124122
2
13.5
2
100
0
54
48
0
0
51
1.00
18133670--18134168
44
11.6
42
73
8
328
29
20
22
27
1.98
18133657--18134167
173
3.0
172
83
3
580
30
20
21
27
1.98
18133838--18134164
129
2.5
129
84
3
419
29
22
21
26
1.99
18136140--18136180
19
2.2
18
86
4
55
34
2
2
60
1.23
18141468--18141513
3
15.3
3
95
0
83
32
2
0
65
1.05
18147065--18147138
36
2.1
34
85
9
96
56
8
8
27
1.56
18150930--18151277
87
4.0
87
87
2
457
14
26
14
44
1.84
18154684--18154717
9
3.8
9
88
0
50
23
29
2
44
1.68
18161543--18161568
2
13.0
2
100
0
52
50
0
0
50
1.00
18165896--18165935
22
2.0
20
85
14
55
22
12
0
65
1.26
18172764--18172792
15
1.9
15
100
0
58
27
20
24
27
1.99
18177813--18177839
12
2.2
12
100
0
54
0
14
0
85
0.61
18199812--18199868
29
1.9
29
85
3
78
43
7
5
43
1.54
18203172--18203216
23
2.0
22
83
12
56
44
0
6
48
1.29
18214458--18214491
7
4.7
7
96
3
59
55
0
0
44
0.99
18214811--18214900
47
1.9
47
84
2
119
50
11
6
32
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18214912--18215127
71
3.0
72
76
4
231
47
12
7
32
1.69
18216986--18217033
23
2.1
23
100
0
96
16
4
16
62
1.48
18237825--18237868
20
2.2
20
88
8
63
20
11
15
52
1.74
18250822--18251006
40
4.6
40
81
6
178
33
28
15
22
1.95
18255131--18255188
22
2.7
21
89
7
89
36
3
0
60
1.14
18255112--18255220
54
2.0
55
89
5
168
37
2
0
59
1.12
18255178--18255228
10
4.9
10
76
9
57
43
1
0
54
1.11
18255664--18255703
3
13.3
3
94
0
71
30
2
0
67
1.04
18255923--18255980
13
4.1
14
74
22
50
46
1
0
51
1.11
18258451--18258507
29
1.9
30
89
3
89
47
0
1
50
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226