Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  169  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54028181--54028220
17
2.3
17
86
4
53
32
0
0
67
0.91
54028795--54029185
9
41.0
9
65
17
82
58
4
3
33
1.36
54028796--54028834
20
2.0
20
94
0
69
66
0
0
33
0.92
54029033--54029082
19
2.7
18
81
6
64
56
0
4
40
1.18
54029012--54029137
10
12.9
10
70
18
61
60
2
2
34
1.23
54029070--54029126
21
2.8
20
75
15
53
57
3
1
36
1.26
54029075--54029116
21
2.0
22
85
4
59
54
2
2
40
1.26
54029017--54029186
10
17.4
10
64
12
50
60
3
2
33
1.26
54029754--54030042
9
31.7
9
69
21
101
29
1
3
65
1.18
54029761--54030086
9
33.6
10
69
16
86
30
1
3
64
1.20
54029810--54029887
33
2.4
32
85
4
95
30
0
3
65
1.10
54029832--54029880
23
2.1
23
84
0
62
30
0
4
65
1.11
54029950--54030005
21
2.5
22
88
5
78
28
0
1
69
0.98
54030012--54030086
32
2.4
29
77
10
78
30
1
4
64
1.20
54030025--54030086
32
1.9
32
86
0
88
32
1
3
62
1.20
54031522--54031561
20
2.0
20
95
0
71
37
15
27
20
1.92
54044772--54044962
23
8.3
23
98
0
364
30
29
21
18
1.97
54047259--54047289
12
2.6
12
100
0
62
35
35
0
29
1.58
54050064--54050173
57
1.9
57
83
3
141
26
20
22
30
1.99
54055917--54055955
11
3.5
11
82
0
51
23
12
5
58
1.54
54055908--54055964
22
2.6
22
72
10
53
17
10
7
64
1.46
54056124--54056173
24
2.1
24
100
0
100
24
0
24
52
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54056201--54056231
11
2.8
11
90
0
53
67
0
0
32
0.91
54057850--54057883
16
2.0
18
88
11
54
50
17
2
29
1.61
54061096--54061173
38
2.1
38
97
0
147
46
17
0
35
1.49
54072009--54072045
16
2.3
16
90
9
58
51
0
0
48
1.00
54077445--54077706
137
1.9
137
83
5
341
33
27
19
19
1.96
54080405--54080554
27
5.6
27
72
6
115
20
20
22
36
1.95
54080389--54080557
54
3.1
54
87
0
230
20
20
22
36
1.95
54089487--54089536
25
2.0
25
92
0
82
16
28
28
28
1.97
54089644--54089706
31
2.0
31
100
0
126
28
14
15
41
1.87
54089658--54089711
16
3.4
16
67
23
51
31
12
16
38
1.87
54098496--54098693
40
4.9
40
83
2
245
21
28
16
33
1.95
54098499--54098693
80
2.4
80
86
0
273
22
28
15
33
1.95
54103483--54103521
14
2.8
14
84
0
51
25
20
15
38
1.92
54124199--54124539
182
1.9
181
85
4
472
39
17
18
25
1.91
54125989--54126022
17
2.0
17
88
11
52
52
5
8
32
1.56
54126797--54126836
21
1.9
21
89
0
62
77
7
2
12
1.07
54127083--54127116
17
1.9
18
88
5
52
26
14
11
47
1.79
54132617--54132661
14
3.3
14
84
9
58
62
4
11
22
1.46
54135115--54135169
20
2.8
21
73
15
55
70
0
21
7
1.11
54138352--54138407
28
2.0
28
86
6
78
28
7
10
53
1.62
54141526--54141598
34
2.1
34
84
2
92
34
9
16
39
1.81
54142869--54142976
42
2.6
42
92
0
171
30
22
15
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54155546--54155604
27
2.2
27
90
0
91
30
20
16
32
1.95
54156974--54157045
26
2.7
27
95
4
137
33
20
12
33
1.90
54165693--54167217
548
2.8
542
90
2
2419
31
17
14
36
1.90
54172566--54172864
50
5.9
50
81
3
292
27
20
29
22
1.99
54172572--54172913
50
6.7
50
79
5
154
27
20
28
23
1.99
54176333--54176384
24
2.2
24
85
0
68
53
9
3
32
1.51
54182556--54182606
15
3.1
17
78
15
63
11
29
1
56
1.46
54189443--54189483
19
2.2
19
100
0
82
31
9
24
34
1.88
54193126--54193197
24
3.3
21
71
24
60
22
1
9
66
1.28
54193128--54193200
21
3.5
21
72
18
64
20
1
10
67
1.29
54193425--54193478
21
2.6
21
93
0
90
22
37
5
35
1.77
54201251--54201278
2
14.0
2
100
0
56
50
0
50
0
1.00
54209165--54209216
9
6.2
8
78
14
52
25
1
0
73
0.94
54209161--54209213
16
3.2
16
86
13
72
26
1
0
71
0.96
54209356--54209416
25
2.4
26
75
10
63
59
9
8
22
1.56
54210240--54210271
16
2.0
17
88
11
50
12
6
12
68
1.37
54211722--54211781
25
2.4
25
88
0
93
35
18
25
21
1.96
54213966--54214022
21
2.8
20
76
20
55
40
15
3
40
1.65
54215616--54215802
51
3.7
50
80
5
216
32
28
16
23
1.96
54215615--54215798
101
1.8
100
87
5
237
32
27
16
23
1.96
54218340--54218372
17
1.9
18
88
11
52
48
0
9
42
1.35
54222414--54222452
14
2.8
14
92
0
60
33
23
7
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54224220--54224267
20
2.4
20
75
0
51
39
6
6
47
1.54
54228489--54228578
24
3.8
24
79
1
92
20
15
20
44
1.87
54239672--54239751
24
3.3
24
85
1
115
27
25
21
26
1.99
54239672--54239763
24
3.8
24
85
1
112
26
23
21
28
1.99
54248650--54248719
24
2.9
24
74
4
70
28
22
17
31
1.96
54248658--54248763
24
4.4
24
76
4
106
25
22
20
31
1.98
54253005--54253388
27
14.2
27
88
2
524
19
19
17
42
1.89
54264188--54264236
24
2.0
24
96
0
89
22
8
22
46
1.77
54264335--54264393
3
19.7
3
100
0
118
67
0
0
32
0.91
54266098--54266160
31
2.0
31
96
0
117
34
23
19
22
1.96
54269436--54269487
27
1.9
27
84
0
68
1
57
25
15
1.48
54269890--54269965
27
2.8
27
83
15
95
25
23
32
18
1.97
54270196--54270251
3
18.7
3
100
0
112
33
0
0
66
0.92
54271027--54271064
18
2.1
18
90
0
58
31
7
50
10
1.66
54278284--54278422
45
3.1
44
75
12
131
37
21
12
28
1.90
54278301--54278463
45
3.6
45
76
11
138
34
22
14
27
1.94
54278858--54279084
50
4.7
48
81
8
228
20
30
20
27
1.98
54278903--54279084
97
1.8
97
88
3
274
18
32
21
27
1.96
54280613--54280706
3
33.3
3
69
18
51
0
31
0
68
0.90
54280654--54280811
4
38.0
4
79
17
123
0
29
1
68
0.97
54280630--54280744
21
5.7
22
70
22
92
0
32
0
67
0.91
54280587--54280756
78
2.2
80
89
5
258
0
30
1
68
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54280654--54280810
74
2.2
69
76
17
162
0
29
1
69
0.96
54280853--54280904
27
1.9
27
96
0
95
15
30
25
28
1.96
54281224--54281275
27
2.0
26
81
11
61
44
5
0
50
1.26
54282427--54282501
34
2.2
33
84
9
98
25
29
1
44
1.63
54282427--54282503
22
3.5
22
81
18
97
25
28
1
44
1.62
54282427--54282503
11
6.9
11
74
21
72
25
28
1
44
1.62
54282465--54282562
51
1.9
51
87
4
144
26
23
3
46
1.66
54282565--54282597
14
2.4
14
94
0
57
66
0
0
33
0.92
54288556--54288659
53
1.9
54
84
1
138
23
22
14
40
1.90
54300547--54300573
14
1.9
14
100
0
54
37
0
3
59
1.15
54308836--54308898
26
2.7
22
80
17
81
57
17
17
7
1.63
54308842--54308895
26
2.1
26
96
0
99
57
18
16
7
1.62
54310169--54310220
20
2.4
23
72
24
58
17
7
34
40
1.78
54310178--54310220
20
2.1
21
91
4
70
16
6
37
39
1.75
54313492--54313530
17
2.2
18
90
4
62
23
7
25
43
1.80
54313836--54313881
15
3.3
15
76
17
62
6
0
30
63
1.20
54313820--54313887
27
2.5
27
87
0
100
5
0
32
61
1.20
54314288--54314326
19
2.1
19
85
9
53
38
2
10
48
1.51
54321856--54321880
8
3.1
8
100
0
50
40
24
0
36
1.55
54335950--54336090
50
2.8
50
80
0
156
28
20
27
23
1.99
54340356--54340415
29
2.1
29
96
0
111
33
18
11
36
1.87
54347919--54348091
43
4.0
42
76
8
161
28
28
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54351604--54351652
22
2.2
22
82
13
57
46
8
6
38
1.58
54351611--54351654
22
2.0
21
87
12
63
47
9
4
38
1.56
54355369--54355427
29
2.0
29
83
3
73
30
3
13
52
1.57
54357814--54357870
29
1.9
29
85
3
78
75
8
1
14
1.11
54357814--54357872
30
2.0
30
83
6
75
74
8
1
15
1.13
54357815--54357872
21
2.7
21
81
7
64
75
6
1
15
1.09
54361098--54361123
5
5.2
5
100
0
52
38
19
19
23
1.93
54366004--54366138
18
8.0
17
70
19
95
40
0
1
57
1.13
54366019--54366158
26
5.5
25
68
20
85
42
0
2
55
1.17
54366032--54366087
15
4.0
15
73
17
57
44
0
0
55
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226