Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  36  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15620578--15620605
6
4.7
6
100
0
56
17
17
14
50
1.79
15620585--15620700
45
2.6
45
88
0
178
18
22
21
37
1.94
15620557--15620697
45
2.9
50
74
15
141
18
21
22
36
1.95
15632254--15632320
29
2.3
29
97
0
125
25
13
28
32
1.93
15649655--15649690
17
2.1
17
89
5
54
52
19
2
25
1.59
15649579--15649779
98
2.1
99
93
1
343
43
22
6
26
1.77
15655339--15655397
23
2.5
23
80
2
73
28
20
18
32
1.96
15665734--15665758
12
2.1
12
100
0
50
48
0
44
8
1.32
15674888--15674929
21
2.0
21
85
0
57
38
2
4
54
1.34
15674863--15674961
51
1.9
52
83
2
128
41
3
2
53
1.28
15681986--15682092
31
3.5
30
75
12
103
22
19
18
39
1.93
15684742--15684783
6
7.0
6
94
0
57
19
45
30
4
1.71
15695031--15695074
17
2.6
18
82
10
56
65
0
0
34
0.93
15696110--15696170
32
1.9
32
89
0
95
45
6
8
39
1.60
15697430--15697462
16
2.0
17
88
5
50
72
0
0
27
0.85
15700232--15700282
15
3.4
14
82
15
57
52
1
29
15
1.54
15706192--15706217
2
13.0
2
100
0
52
50
0
0
50
1.00
15711274--15711318
3
15.3
3
95
4
83
68
0
0
31
0.89
15713590--15713617
9
3.1
9
100
0
56
32
0
0
67
0.91
15713684--15713710
11
2.5
11
100
0
54
62
0
0
37
0.95
15724444--15724481
2
19.0
2
88
0
58
44
0
0
55
0.99
15724444--15724481
12
3.2
12
96
0
67
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15726248--15726281
17
2.0
17
94
0
59
26
32
23
17
1.97
15726640--15726690
28
1.9
26
84
11
68
33
0
1
64
1.05
15726736--15726866
62
2.1
63
80
6
153
54
4
5
35
1.43
15736925--15736993
3
23.0
3
96
0
129
65
0
1
33
1.02
15738670--15739012
180
1.9
177
83
2
445
27
25
17
29
1.97
15738535--15738949
44
9.3
44
72
6
251
29
24
14
31
1.94
15738668--15739020
44
7.9
44
72
7
210
28
25
17
29
1.97
15738760--15739081
133
2.4
137
82
4
355
27
24
17
30
1.97
15742907--15742966
20
3.0
20
97
0
111
31
15
23
30
1.95
15745348--15745398
3
17.0
3
95
0
93
64
0
1
33
1.05
15748983--15749030
22
2.1
22
88
7
69
68
4
0
27
1.07
15748994--15749057
34
1.9
34
93
3
112
64
0
1
34
1.03
15755640--15755758
58
2.0
59
91
1
195
36
7
18
37
1.79
15765902--15766020
61
1.9
62
88
5
179
38
2
7
51
1.44
15769301--15769325
6
4.2
6
100
0
50
64
20
16
0
1.30
15776024--15776068
21
2.1
21
95
0
81
20
37
13
28
1.90
15775981--15776113
66
2.0
66
86
0
185
24
32
18
25
1.97
15776051--15776213
45
3.6
45
85
3
220
25
28
21
25
1.99
15776663--15776693
15
2.1
15
93
0
53
35
12
9
41
1.76
15803139--15803191
26
2.0
26
89
7
81
41
5
1
50
1.36
15815515--15815549
6
5.8
6
100
0
70
34
0
17
48
1.47
15832385--15832517
4
29.2
4
73
22
79
66
0
32
1
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15832389--15832457
18
3.7
18
86
7
93
65
0
31
2
1.08
15832426--15832504
5
15.4
5
73
8
52
69
0
29
1
0.96
15832431--15832486
11
5.4
11
82
18
66
66
0
32
1
1.03
15832407--15832572
30
5.5
30
71
20
98
66
0
32
0
1.01
15832385--15832530
14
10.1
14
72
20
74
65
0
33
1
1.02
15832582--15832620
19
2.0
20
85
5
53
30
0
7
61
1.24
15840058--15840190
62
2.2
60
77
12
144
54
11
0
33
1.42
15840317--15840348
3
10.7
3
100
0
64
68
31
0
0
0.90
15840418--15840456
20
2.0
21
85
10
55
66
10
0
23
1.22
15840579--15840654
27
2.8
27
84
4
91
18
30
28
22
1.97
15840700--15840770
26
2.7
26
89
8
108
46
0
12
40
1.42
15847073--15847434
46
8.6
44
83
13
380
28
21
14
35
1.92
15847208--15847398
36
5.0
36
83
12
238
29
20
13
37
1.90
15847116--15847434
82
3.9
82
83
12
397
28
21
13
36
1.91
15847162--15847393
118
2.0
118
95
0
419
28
20
12
37
1.90
15850281--15850419
46
3.0
46
88
4
217
30
25
9
35
1.87
15855031--15855254
111
2.0
111
99
0
439
30
14
25
29
1.95
15858018--15858065
18
2.8
17
81
6
62
43
8
0
47
1.33
15860582--15860617
3
12.0
3
100
0
72
66
0
0
33
0.92
15872836--15872874
18
2.2
18
100
0
78
51
28
0
20
1.48
15883960--15883991
2
16.0
2
100
0
64
50
0
0
50
1.00
15888358--15888396
16
2.5
15
84
12
51
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15888545--15888730
59
3.2
59
67
21
181
40
5
4
50
1.45
15888751--15888780
16
1.9
15
93
6
51
40
0
10
50
1.36
15888724--15888911
61
3.1
60
68
14
170
42
1
6
48
1.39
15888772--15888806
18
2.0
17
88
5
52
45
0
0
54
0.99
15888534--15888932
120
3.3
120
93
2
662
41
3
5
49
1.41
15889162--15889197
16
2.2
16
90
0
54
41
30
0
27
1.56
15902251--15902279
2
14.5
2
100
0
58
51
0
0
48
1.00
15911751--15911796
23
2.0
23
86
0
65
54
0
0
45
0.99
15923603--15923641
18
2.2
17
86
4
51
23
0
10
66
1.22
15946592--15946679
42
2.1
42
86
0
122
31
23
27
17
1.97
15949159--15949236
26
3.0
27
73
21
92
15
15
8
60
1.58
15954387--15954414
2
14.0
2
100
0
56
0
50
0
50
1.00
15957193--15957234
17
2.5
17
80
7
50
28
2
11
57
1.47
15963768--15963880
40
2.9
37
76
5
109
32
23
17
26
1.97
15963772--15963905
41
3.4
41
72
11
127
33
23
16
26
1.95
15964897--15964953
2
31.0
2
81
16
70
47
0
0
52
1.00
15964888--15964953
22
3.0
22
89
8
91
43
0
0
56
0.99
15964894--15964960
19
3.4
21
80
17
81
44
1
0
53
1.09
15978519--15978544
13
2.0
13
100
0
52
46
15
15
23
1.83
15982130--15982171
19
2.3
19
84
8
61
64
0
0
35
0.94
15985450--15985491
17
2.5
17
78
17
52
26
2
7
64
1.32
15985828--15986000
9
18.9
9
72
15
79
57
7
0
34
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15987148--15987191
22
1.9
23
86
9
63
59
0
2
38
1.10
15991857--15991921
27
2.4
27
86
0
85
23
30
32
13
1.93
15992000--15992037
10
3.7
10
89
3
58
71
0
28
0
0.87
15994264--15995041
157
5.0
154
78
11
841
30
10
6
51
1.63
15994257--15995041
310
2.5
313
92
2
1283
31
10
6
50
1.63
15994312--15995041
158
4.7
154
76
14
690
31
10
6
52
1.60
15995288--15995400
20
5.6
21
74
12
78
0
28
1
69
0.98
15995291--15995401
38
2.8
38
82
13
129
0
28
1
69
0.99
15995323--15995392
4
17.5
4
74
21
58
0
28
0
71
0.86
15995307--15995401
38
2.4
38
87
7
136
0
31
1
67
0.98
15995288--15995400
10
11.3
10
69
20
67
0
28
1
69
0.98
15995895--15995953
22
2.6
22
86
7
75
35
6
1
55
1.36
16000446--16000720
46
6.0
46
90
0
410
36
9
25
28
1.88
16001074--16001116
3
14.3
3
100
0
86
32
0
0
67
0.91
16002451--16002546
40
2.4
40
80
3
104
37
9
11
41
1.74
16002487--16002546
20
3.1
19
76
9
66
35
10
11
43
1.75
16008185--16008233
6
7.8
6
84
6
62
48
14
18
18
1.80
16008213--16008319
46
2.3
46
87
4
155
42
17
18
21
1.90
16010874--16010923
20
2.5
19
80
6
55
38
20
6
36
1.77
16012235--16012280
22
2.1
22
91
0
74
50
34
0
15
1.44
16012234--16012291
7
8.3
7
84
7
73
46
36
0
17
1.48
16012432--16012503
36
2.0
36
97
0
135
38
15
11
34
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16013415--16013507
22
4.1
22
78
10
98
41
18
24
15
1.88
16013409--16013518
22
4.6
24
75
13
93
40
18
24
16
1.90
16013409--16013518
47
2.3
47
86
6
143
40
18
24
16
1.90
16014577--16014662
5
17.0
5
77
17
81
56
2
1
39
1.19
16014580--16014627
21
2.3
22
85
10
73
60
0
0
39
0.97
16014582--16014621
8
4.8
8
82
11
53
60
0
0
40
0.97
16017273--16017323
22
2.4
22
93
3
86
33
27
15
23
1.95
16018393--16018436
2
22.0
2
95
0
79
50
0
2
47
1.13
16019643--16019676
2
17.0
2
100
0
68
50
0
0
50
1.00
16020133--16020177
2
22.5
2
100
0
90
51
0
0
48
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226