Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  70713020

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  206  of  226  ( 27023 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65084406--65084536
51
2.6
51
86
2
183
24
16
27
32
1.96
65084545--65084631
45
1.9
45
95
0
156
25
17
24
33
1.96
65085015--65085045
10
3.2
10
95
4
55
64
0
6
29
1.18
65087040--65087078
10
3.9
10
93
0
60
56
28
5
10
1.54
65087040--65087077
20
1.9
20
94
0
67
55
28
5
10
1.56
65087295--65087406
50
2.2
49
90
7
181
46
20
8
25
1.78
65087759--65087788
15
2.1
14
93
6
51
36
23
6
33
1.81
65087991--65088045
22
2.5
22
82
5
67
36
21
27
14
1.93
65090853--65090910
29
2.0
29
96
0
107
46
17
6
29
1.74
65092388--65092423
16
2.2
16
100
0
72
25
0
36
38
1.56
65092659--65092693
18
2.0
17
88
5
52
54
0
0
45
0.99
65092585--65092797
67
3.1
67
63
19
152
46
4
3
46
1.38
65092576--65092841
137
1.9
138
91
0
435
44
4
4
47
1.41
65092579--65092875
137
2.2
135
84
6
330
44
5
3
46
1.44
65099374--65099399
13
2.0
13
100
0
52
61
7
30
0
1.24
65099413--65099438
13
2.0
13
100
0
52
61
7
30
0
1.24
65100665--65100714
3
16.7
3
91
0
73
28
2
4
66
1.21
65113858--65113923
15
4.5
15
81
5
82
83
0
16
0
0.65
65113858--65113923
9
6.9
9
83
13
87
83
0
16
0
0.65
65115169--65115314
44
3.3
44
80
0
184
28
21
26
23
1.99
65115157--65115330
88
2.0
88
87
0
249
29
18
27
23
1.98
65115307--65115470
88
1.9
88
88
5
251
26
23
27
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65115324--65115478
45
3.5
44
67
17
122
27
22
27
22
1.99
65115457--65116435
258
3.8
258
91
2
1445
29
18
23
28
1.98
65115457--65116437
132
7.6
131
89
2
1332
29
19
23
28
1.98
65116006--65116198
44
4.4
43
68
11
149
27
18
26
27
1.98
65116034--65116397
44
8.3
44
64
12
129
28
20
24
27
1.99
65117877--65117910
6
5.7
6
85
0
50
11
5
0
82
0.83
65117873--65117913
12
3.5
11
81
12
55
9
9
0
80
0.91
65118227--65118266
3
13.0
3
84
5
53
37
2
0
60
1.11
65125840--65125905
3
22.0
3
77
11
64
30
4
1
63
1.23
65128574--65128623
21
2.4
21
80
6
57
20
30
22
28
1.98
65135908--65135968
30
2.0
31
90
3
97
40
0
39
19
1.52
65136516--65136934
27
15.5
27
83
2
500
41
22
17
18
1.90
65147674--65147708
17
2.1
17
88
0
52
40
2
0
57
1.14
65148280--65148344
25
2.6
25
87
7
87
41
7
12
38
1.71
65148298--65148350
25
2.1
25
100
0
106
39
7
7
45
1.61
65157320--65157489
27
6.3
27
83
2
209
46
20
13
20
1.83
65157311--65157489
81
2.2
81
85
2
234
46
19
13
20
1.83
65157654--65157707
26
2.1
26
85
0
72
20
22
20
37
1.95
65157818--65157903
28
3.1
28
91
0
118
19
18
26
34
1.95
65157804--65157880
28
2.5
33
72
24
85
22
19
23
35
1.96
65162007--65162066
30
2.0
30
93
0
102
16
35
8
40
1.79
65162968--65163046
27
2.9
27
90
0
131
43
22
16
17
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65162968--65163075
27
4.0
27
83
7
112
40
21
17
20
1.91
65162968--65163072
54
1.9
54
84
3
140
41
20
17
20
1.90
65165311--65165443
68
1.9
72
87
6
202
39
3
5
51
1.40
65167316--65167342
7
3.9
7
100
0
54
44
0
0
55
0.99
65168140--65168232
36
2.5
35
80
13
98
43
3
23
30
1.70
65168143--65168232
37
2.4
37
83
7
103
42
3
23
31
1.70
65172014--65172073
26
2.3
27
85
2
77
45
13
10
31
1.76
65176556--65176590
17
2.1
17
88
0
52
40
17
5
37
1.73
65177159--65177206
3
16.3
3
95
4
89
35
0
0
64
0.94
65181758--65181804
3
15.7
3
100
0
94
31
0
0
68
0.90
65182649--65182693
7
6.6
7
84
5
56
22
11
33
33
1.89
65183732--65183766
2
17.5
2
100
0
70
48
0
0
51
1.00
65187876--65187944
31
2.3
30
82
2
75
47
10
8
33
1.68
65188119--65188194
40
1.9
40
81
7
93
39
23
15
21
1.92
65188189--65188743
114
4.9
113
79
7
520
23
23
25
26
2.00
65188212--65188743
228
2.3
227
82
6
612
23
23
25
27
2.00
65189029--65189081
7
7.4
7
76
4
52
16
0
35
47
1.48
65189353--65189427
31
2.4
32
84
2
98
21
1
38
38
1.62
65190140--65190221
39
2.1
39
88
4
121
17
2
40
40
1.62
65196743--65196913
66
2.6
65
84
4
200
39
18
28
14
1.89
65196942--65196996
21
2.6
21
91
0
83
34
10
47
7
1.66
65196960--65197001
21
2.2
18
84
16
50
30
14
47
7
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65197350--65197553
43
4.7
42
77
9
153
26
26
24
22
2.00
65197480--65197614
43
3.2
42
80
9
123
27
29
20
22
1.98
65197720--65197762
22
2.0
22
90
0
68
41
25
20
11
1.86
65201095--65201177
2
41.5
2
100
0
166
0
49
0
50
1.00
65203260--65203284
8
3.1
8
100
0
50
76
0
0
24
0.80
65213359--65213488
51
2.6
50
81
4
154
24
16
26
33
1.96
65213497--65213584
46
2.0
44
84
8
115
25
17
23
34
1.96
65213691--65213762
37
1.9
38
85
2
101
41
4
22
31
1.73
65224525--65224655
70
1.9
69
85
4
185
35
13
11
38
1.81
65225396--65225438
23
1.9
22
85
4
59
20
9
9
60
1.55
65229493--65229525
17
1.9
17
93
0
57
75
9
0
15
1.03
65230818--65230858
18
2.3
19
83
12
59
21
4
2
70
1.18
65230827--65230864
18
2.1
18
90
0
58
23
5
2
68
1.23
65236681--65236743
19
3.2
20
88
11
94
34
20
9
34
1.85
65236690--65236743
19
2.8
19
97
0
99
35
20
11
33
1.88
65237159--65237387
44
5.2
44
65
4
156
22
25
26
25
2.00
65237103--65238127
88
11.8
88
84
2
1169
21
24
26
27
2.00
65237410--65237727
44
7.2
44
64
14
145
23
25
24
26
2.00
65237115--65238134
263
3.9
262
81
5
1195
21
24
25
27
2.00
65242189--65242261
22
3.3
22
92
0
119
24
27
17
30
1.97
65243959--65244056
11
9.5
11
70
23
63
56
0
4
39
1.19
65243952--65244043
29
3.1
30
87
7
127
58
0
3
38
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65243977--65244071
39
2.4
38
83
10
120
60
0
3
36
1.13
65243990--65244085
47
2.0
47
82
10
113
60
0
3
36
1.13
65244050--65244082
15
2.1
16
88
5
50
78
0
0
21
0.75
65245376--65245430
21
2.7
21
91
5
87
36
18
10
34
1.86
65246159--65246207
16
3.2
16
83
11
50
63
6
0
30
1.19
65247686--65247723
4
9.5
4
100
0
76
26
23
0
50
1.50
65255420--65255475
18
3.1
18
73
16
53
14
7
5
73
1.23
65256147--65256193
23
2.1
21
84
7
58
31
4
2
61
1.27
65256487--65256538
26
2.0
25
88
3
77
32
9
1
55
1.43
65262446--65262502
11
5.4
11
78
21
68
59
0
3
36
1.14
65262445--65262509
30
2.2
29
97
2
121
63
0
3
33
1.10
65262458--65262494
19
2.0
18
94
5
65
64
0
2
32
1.07
65267173--65267302
56
2.3
56
82
5
156
43
0
4
50
1.28
65267266--65267315
26
2.0
26
88
4
75
52
4
0
44
1.20
65267400--65267488
46
2.0
44
83
16
112
37
23
7
31
1.84
65267470--65267521
16
3.2
16
88
0
86
30
26
3
38
1.74
65268120--65268174
27
2.0
27
100
0
110
29
32
7
30
1.84
65272386--65272488
9
11.4
9
89
0
143
24
7
24
43
1.80
65272954--65274074
228
4.9
228
92
0
1713
28
29
22
19
1.98
65272954--65274305
228
5.9
228
89
0
972
28
27
23
20
1.99
65272954--65274317
684
2.0
684
83
1
1746
28
27
23
20
1.99
65275813--65275860
19
2.5
19
86
0
60
50
8
8
33
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65289244--65289281
16
2.3
17
90
4
60
34
0
2
63
1.09
65289681--65289742
29
2.1
29
85
5
81
32
9
8
50
1.65
65295607--65295672
36
1.9
32
87
6
78
74
12
4
9
1.21
65299520--65299566
22
2.1
22
88
0
67
68
2
4
25
1.19
65301401--65301732
46
6.8
51
77
8
262
30
25
17
26
1.98
65301448--65301732
46
6.0
46
77
8
282
29
25
17
27
1.97
65301415--65301738
97
3.3
97
88
0
459
29
26
16
27
1.97
65302038--65302093
24
2.3
24
90
0
94
30
25
10
33
1.90
65309029--65309076
24
2.0
24
83
0
60
8
25
22
43
1.81
65313096--65313144
3
16.7
3
79
12
57
65
2
4
28
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226